mRNA_H-canaliculatus_M_contigs75417.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75417.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75417.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75417.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75417contigH-canaliculatus_M_contigs75417:21..534 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Model size514
Hectar predicted targeting categoryother localisation
Exons1
Cds size303
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854091.3405285-UTR-H-canaliculatus_M_contigs75417:20..251696854091.3405285-UTR-H-canaliculatus_M_contigs75417:20..25Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs75417 21..25 +
1696854091.3666193-UTR-H-canaliculatus_M_contigs75417:328..5341696854091.3666193-UTR-H-canaliculatus_M_contigs75417:328..534Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs75417 329..534 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854091.3559897-CDS-H-canaliculatus_M_contigs75417:25..3281696854091.3559897-CDS-H-canaliculatus_M_contigs75417:25..328Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75417 26..328 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75417.1.1prot_H-canaliculatus_M_contigs75417.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75417 26..328 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75417.1.1

>prot_H-canaliculatus_M_contigs75417.1.1 ID=prot_H-canaliculatus_M_contigs75417.1.1|Name=mRNA_H-canaliculatus_M_contigs75417.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=101bp
MGANGTAGRGSGETVLCFSRLWLHVPPPRILFVFEVVSPSLRAPQRCHAQ
IDACVVCGLCAGAGAAEVLHDAWYCTDALKHTVAYQRTSITLEHLSLCSG
*
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mRNA from alignment at H-canaliculatus_M_contigs75417:21..534+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75417.1.1 ID=mRNA_H-canaliculatus_M_contigs75417.1.1|Name=mRNA_H-canaliculatus_M_contigs75417.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=514bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75417:21..534+ (Hapterophycus canaliculatus Oshoro7m male)
CAGGGATGGGGGCGAACGGGACAGCGGGGAGGGGCTCTGGCGAAACAGTG
CTGTGCTTTTCACGGCTATGGCTGCACGTTCCCCCGCCCCGCATTTTATT
TGTTTTTGAGGTTGTTTCACCGAGCTTACGGGCTCCGCAGAGATGCCACG
CACAGATCGACGCGTGTGTTGTGTGTGGACTTTGTGCTGGTGCTGGTGCT
GCTGAGGTACTACACGACGCCTGGTACTGCACCGATGCCCTCAAACACAC
GGTAGCGTACCAGCGAACTTCGATTACATTGGAACACCTGTCATTGTGCT
CAGGGTAAGCCCAGCGCGATTTCCAGCTTTGAGGACTGATTTGAGCCATG
TGTGATCCATGGCGCTACCTACAGTAATAATATTGCAGACCATTGTGTAT
CTTTCCGCTCGTTCGCCACGAGATCAAACTATTCACAAGATCAGAGGGGG
AAGGAGACTTTGCTCGCATATTCGCCTACATCAAGCAGGCGAGATGTGAA
CTTGGCGAGCCGCC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75417:21..534+

>mRNA_H-canaliculatus_M_contigs75417.1.1 ID=mRNA_H-canaliculatus_M_contigs75417.1.1|Name=mRNA_H-canaliculatus_M_contigs75417.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=303bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75417:21..534+ (Hapterophycus canaliculatus Oshoro7m male)
ATGGGGGCGAACGGGACAGCGGGGAGGGGCTCTGGCGAAACAGTGCTGTG
CTTTTCACGGCTATGGCTGCACGTTCCCCCGCCCCGCATTTTATTTGTTT
TTGAGGTTGTTTCACCGAGCTTACGGGCTCCGCAGAGATGCCACGCACAG
ATCGACGCGTGTGTTGTGTGTGGACTTTGTGCTGGTGCTGGTGCTGCTGA
GGTACTACACGACGCCTGGTACTGCACCGATGCCCTCAAACACACGGTAG
CGTACCAGCGAACTTCGATTACATTGGAACACCTGTCATTGTGCTCAGGG
TAA
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