mRNA_H-canaliculatus_M_contigs7539.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7539.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7539.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7539.1.1 vs.
Match: Peptidylprolyl (isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGT5_ECTSI)

HSP 1 Score: 187 bits (474), Expect = 3.690e-57
Identity = 92/113 (81.42%), Postives = 105/113 (92.92%), Query Frame = 1 
Query:    1 GPLSRGQCVASAMSAAAGLVAAAAGAGARDAPRTPPRARMPDGDTQGTDYMELGGGSKSFAKPRIRYADFKDLENGIQYKDAKIGAGRAASEGDRVVFDWEGYTIGYNGNLFE 339
            GP+SR QC+ASAMS AAGLVA AA AGAR+AP+ PPRAR+P+GDTQG+DYMELGGGSKSFAKPRIRY DFKDL+ G+QYKDAK+GAGRA ++GDRVVFDW+GYTIGYNGNLFE
Sbjct:   61 GPVSRRQCLASAMS-AAGLVAGAAAAGAREAPKPPPRARLPEGDTQGSDYMELGGGSKSFAKPRIRYPDFKDLDKGLQYKDAKVGAGRAVTDGDRVVFDWDGYTIGYNGNLFE 172
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BLAST of mRNA_H-canaliculatus_M_contigs7539.1.1 vs.
Match: Peptidylprolyl (isomerase n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4END1_VITBC)

HSP 1 Score: 77.4 bits (189), Expect = 2.000e-15
Identity = 33/59 (55.93%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:  163 GGSKSFAKPRIRYADFKDLENGIQYKDAKIGAGRAASEGDRVVFDWEGYTIGYNGNLFE 339
            GGS+ F K R +Y DF+   +G+Q+KD K G G   ++GDRVV DWEGYTIGY G +FE
Sbjct:    7 GGSQRFGKTRAKYPDFEQTASGLQFKDVKEGEGTPPAKGDRVVLDWEGYTIGYYGRIFE 65
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BLAST of mRNA_H-canaliculatus_M_contigs7539.1.1 vs.
Match: Peptidylprolyl (isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI71_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 2.380e-15
Identity = 32/54 (59.26%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:  178 FAKPRIRYADFKDLENGIQYKDAKIGAGRAASEGDRVVFDWEGYTIGYNGNLFE 339
            + KPR +Y DF +L +G+QYKD K+G+G   S GDRVV DWEGYTIGY G  F+
Sbjct:    9 YGKPRAKYPDFVELPSGLQYKDIKVGSGEKPSTGDRVVIDWEGYTIGYYGRPFQ 62
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BLAST of mRNA_H-canaliculatus_M_contigs7539.1.1 vs.
Match: Peptidylprolyl (isomerase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WEE0_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 4.100e-15
Identity = 42/94 (44.68%), Postives = 53/94 (56.38%), Query Frame = 1 
Query:   58 VAAAAGAGARDAPRTPPRARMPDGDTQGTDYMELGGGSKSFAKPRIRYADFKDLENGIQYKDAKIGAGRAASEGDRVVFDWEGYTIGYNGNLFE 339
            VA  A   A +  +  P A + DG  Q            ++ KPRI Y DF   ++G+QYKD + G+G AA+ GDRVV DWEGYTIGY G  FE
Sbjct:   10 VAPRASQAAEELSKNMPMAALSDGQVQ------------AYGKPRITYPDFTLTKSGLQYKDVRAGSGSAAAVGDRVVIDWEGYTIGYYGRPFE 91
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BLAST of mRNA_H-canaliculatus_M_contigs7539.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G580_9RHOD)

HSP 1 Score: 76.3 bits (186), Expect = 4.620e-15
Identity = 37/75 (49.33%), Postives = 47/75 (62.67%), Query Frame = 1 
Query:  115 RMPDGDTQGTDYMELGGGSKSFAKPRIRYADFKDLENGIQYKDAKIGAGRAASEGDRVVFDWEGYTIGYNGNLFE 339
            R+PD      D   + G  + F K RI Y DF    +G+QYKD KIG G + ++GDR+V DWEGYTIGY G +FE
Sbjct:   70 RIPDVYAVVEDMPAIRG--RQFGKERILYKDFSLTPSGLQYKDVKIGNGNSPNDGDRIVVDWEGYTIGYYGRIFE 142
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BLAST of mRNA_H-canaliculatus_M_contigs7539.1.1 vs.
Match: Peptidylprolyl (isomerase n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J2M3_GUITC)

HSP 1 Score: 75.9 bits (185), Expect = 7.240e-15
Identity = 30/56 (53.57%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:  172 KSFAKPRIRYADFKDLENGIQYKDAKIGAGRAASEGDRVVFDWEGYTIGYNGNLFE 339
            K + K +++Y DF    +G+QYKD K+G G +  +GDRVVFDWEGYTIGY G +F+
Sbjct:    7 KDYGKTKMKYPDFVATPSGLQYKDVKVGNGESPEDGDRVVFDWEGYTIGYYGRIFQ 62
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BLAST of mRNA_H-canaliculatus_M_contigs7539.1.1 vs.
Match: Peptidylprolyl (isomerase n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BLC5_9RHOD)

HSP 1 Score: 76.3 bits (186), Expect = 9.560e-15
Identity = 37/75 (49.33%), Postives = 47/75 (62.67%), Query Frame = 1 
Query:  115 RMPDGDTQGTDYMELGGGSKSFAKPRIRYADFKDLENGIQYKDAKIGAGRAASEGDRVVFDWEGYTIGYNGNLFE 339
            R+PD      D   + G  + F K RI Y DF    +G+QYKD KIG G + ++GDR+V DWEGYTIGY G +FE
Sbjct:   43 RIPDVYAVVEDMPAIRG--RQFGKERILYKDFSLTPSGLQYKDVKIGNGNSPNDGDRIVVDWEGYTIGYYGRIFE 115
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BLAST of mRNA_H-canaliculatus_M_contigs7539.1.1 vs.
Match: FKBP-like (peptidyl-prolyl cis-trans isomerase family protein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=A0A1R7T3F3_ARATH)

HSP 1 Score: 74.3 bits (181), Expect = 4.770e-14
Identity = 34/76 (44.74%), Postives = 50/76 (65.79%), Query Frame = 1 
Query:  124 DGD----TQGTDYMELGGGSKSFAKPRIRYADFKDLENGIQYKDAKIGAGRAASEGDRVVFDWEGYTIGYNGNLFE 339
            DGD    +Q  D   L G  K + K +++Y D+ + ++G+QYKD ++G G  A +GD+VV DW+GYTIGY G +FE
Sbjct:   82 DGDFASASQFADMPALKG--KDYGKTKMKYPDYTETQSGLQYKDLRVGTGPIAKKGDKVVVDWDGYTIGYYGRIFE 155
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BLAST of mRNA_H-canaliculatus_M_contigs7539.1.1 vs.
Match: peptidyl-prolyl (cis-trans isomerase FKBP19, chloroplastic-like isoform X1 n=2 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A370AA)

HSP 1 Score: 73.6 bits (179), Expect = 6.110e-14
Identity = 31/73 (42.47%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:  124 DGDTQGTDYMELGG-GSKSFAKPRIRYADFKDLENGIQYKDAKIGAGRAASEGDRVVFDWEGYTIGYNGNLFE 339
            DG +  T++ ++     K++ K ++RY D+ + E+G+QYKD ++G G     GD VV DW+GYTIGY G +FE
Sbjct:   64 DGSSVATEFADMPALRGKNYGKTKMRYPDYTETESGLQYKDLRVGDGPNPKAGDTVVVDWDGYTIGYYGRIFE 136
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BLAST of mRNA_H-canaliculatus_M_contigs7539.1.1 vs.
Match: Peptidylprolyl (isomerase n=3 Tax=Ziziphus jujuba TaxID=326968 RepID=A0A6P4BAJ8_ZIZJJ)

HSP 1 Score: 74.7 bits (182), Expect = 7.990e-14
Identity = 33/69 (47.83%), Postives = 47/69 (68.12%), Query Frame = 1 
Query:  133 TQGTDYMELGGGSKSFAKPRIRYADFKDLENGIQYKDAKIGAGRAASEGDRVVFDWEGYTIGYNGNLFE 339
            +Q  D   L G  K + K ++RY D+K+ ++G+Q+KD ++G GR  S GD VV DW+GYTIGY G +FE
Sbjct:   91 SQFADMPALRG--KDYGKTKMRYPDYKETDSGLQFKDLRVGDGRTPSPGDIVVVDWDGYTIGYYGRIFE 157
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7539.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Peptidylprolyl3.690e-5781.42isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG... [more]
Peptidylprolyl2.000e-1555.93isomerase n=2 Tax=Vitrella brassicaformis TaxID=11... [more]
Peptidylprolyl2.380e-1559.26isomerase n=1 Tax=Tribonema minus TaxID=303371 Rep... [more]
Peptidylprolyl4.100e-1544.68isomerase n=1 Tax=Rhizochromulina marina TaxID=103... [more]
Hypothetical4.620e-1549.33protein (Fragment) n=1 Tax=Rhodosorus marinus TaxI... [more]
Peptidylprolyl7.240e-1553.57isomerase n=1 Tax=Guillardia theta (strain CCMP271... [more]
Peptidylprolyl9.560e-1549.33isomerase n=1 Tax=Rhodosorus marinus TaxID=101924 ... [more]
FKBP-like4.770e-1444.74peptidyl-prolyl cis-trans isomerase family protein... [more]
peptidyl-prolyl6.110e-1442.47cis-trans isomerase FKBP19, chloroplastic-like iso... [more]
Peptidylprolyl7.990e-1447.83isomerase n=3 Tax=Ziziphus jujuba TaxID=326968 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7539contigH-canaliculatus_M_contigs7539:3536..5259 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LGT5
PFAMsFKBP_C
Model size339
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
GOsGO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005488,GO:0005527,GO:0005528,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006457,GO:0006464,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009987,GO:0016020,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0031976,GO:0031977,GO:0031984,GO:0034357,GO:0036211,GO:0042651,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035,GO:0061077,GO:0071704,GO:0097159,GO:0140096,GO:1901363,GO:1901564
Exons3
Evalue6.06e-58
EggNOG OGsCOG0545@1|root,KOG0552@2759|Eukaryota
Ec32 ortholog descriptionimmunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein
Ec32 orthologEc-07_005110.2
Descriptionhistone peptidyl-prolyl isomerization
Cds size339
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854091.0414586-CDS-H-canaliculatus_M_contigs7539:3535..37381696854091.0414586-CDS-H-canaliculatus_M_contigs7539:3535..3738Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7539 3536..3738 +
1696854091.0621316-CDS-H-canaliculatus_M_contigs7539:4304..44171696854091.0621316-CDS-H-canaliculatus_M_contigs7539:4304..4417Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7539 4305..4417 +
1696854091.0751233-CDS-H-canaliculatus_M_contigs7539:5236..52591696854091.0751233-CDS-H-canaliculatus_M_contigs7539:5236..5259Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7539 5237..5259 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7539.1.1prot_H-canaliculatus_M_contigs7539.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7539 3536..5259 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7539.1.1

>prot_H-canaliculatus_M_contigs7539.1.1 ID=prot_H-canaliculatus_M_contigs7539.1.1|Name=mRNA_H-canaliculatus_M_contigs7539.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=113bp
GPLSRGQCVASAMSAAAGLVAAAAGAGARDAPRTPPRARMPDGDTQGTDY
MELGGGSKSFAKPRIRYADFKDLENGIQYKDAKIGAGRAASEGDRVVFDW
EGYTIGYNGNLFE
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mRNA from alignment at H-canaliculatus_M_contigs7539:3536..5259+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7539.1.1 ID=mRNA_H-canaliculatus_M_contigs7539.1.1|Name=mRNA_H-canaliculatus_M_contigs7539.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1724bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7539:3536..5259+ (Hapterophycus canaliculatus Oshoro7m male)
GGACCGCTCAGCCGCGGGCAGTGCGTCGCATCTGCAATGTCGGCTGCCGC
GGGGCTAGTAGCGGCGGCGGCAGGGGCAGGGGCGCGCGATGCGCCGAGGA
CTCCCCCACGGGCCCGGATGCCGGATGGGGACACCCAGGGTACCGACTAC
ATGGAGCTCGGCGGGGGAAGCAAGAGCTTCGCGAAGCCGCGCATCCGTTA
CGCGTGAGAAAGGGCAAAGTTAGAGTACACCAGTGGCTGCAGCAGTAGCG
GCAGCGGCGGCGGTAGCGGCAGGAGGCAAAGACTTTCGCGAACGGAGCGC
GGGTGTTGCCGGGACGAGAGGGGTGCAGTGCAGTCCAGCGTACCGCGATC
GCAGGAGCATTGGCAGCAGCAGCGTCAGGAGCAAGCGCACGAGCCGCAGA
AAGCAGCTGTGTTGCTCCACGCCATTTAACGGCTGCAGCTGCTTTGCTTT
TTCCTTTCCTTGACGGGGAACACGGAAAACGCGTCGTTACGTTTCGACTT
GTATTCACGTATCAACGACTATTTCACGAGCCGCTAGTAGTTCTGTCCTC
TGCGTTCGAGGTAACCCGTTGGCAGTCATTTGTCTCACGTCCTCCCTAAC
GGCGGGGACATGTTCGTTTCAGAGTCGATGGACGGCGTTTCTCACAACAA
GCCAGGCGAGCTTACGCCTCCCGCCTTCTCCAACCCCGCTTCACCCGCCC
CGCTGTTGTGTGCGTGTGCTCGAAAAATTCGCTGCTGTCCGATCCGACGC
TGTCGTCACCGCCGTGCAGAGATTTCAAAGATCTGGAGAACGGTATCCAG
TACAAGGATGCCAAGATCGGGGCGGGCAGGGCAGCCTCGGAGGGCGACAG
GGTCGTCTTTGACTGGGAGGGTTACACGATCGGTGAGAACTGGGGACAAT
CGGGATATACAAAGCGATCCGAAACGAGGTTTTCGAGCGATACTTGTGCA
CGCCGCGTATGGGTGGTCATACGGCTAACGGTGTGAAGCGATTGTTTTTG
GTTGCAAGGGGCACACGAAGCAAAACACGCAAGCAGGTGAATAATACCCC
CGCGAAGCGTCACCCGCACGTAAGCCTCCGCATCTGCCACTGGTTTGCTG
GAAGTCGCGACCGTAAACATGCGACATGCCGGAAGCTACGCCGATGGAAG
CTCGGTCGAACCAGCATGGTATTTGGGGATGTTGCAACCTTTGTTGTTTT
GGTAACAACGTATAATTTCATTGGAAGTGACGAGCACGAGCGAAGCTGAC
ACCATGATCACCATGATCATCATCGCGGTCGGCAGCAGCAGCAGCAGCAG
CAGCAGCACAAGCAGCAGATGTTTACAGTGTGATCCCACAAAGGAGGAAC
ATCGCAATCAAGCGACATGAAGCCCCAACAGCAAGCACAACAAGAACAGT
GACCACGAACAACGGCGGACAACACACAGAAAACGACCGAACAATCAACC
ACTCACACCTACCCATGGCCAGACCGCCAAAAAAGCCACCAAATAATAAA
GCAAGCAGCAAACAAACAAACAAACAAGCATTTCATACTGACAAGTAGCA
AGACCTCTCGCCTGAGCGTGCCGTCATCGCGAAAGGTCAGATATCAGATA
TCAGATATCAGATATCATATGTCAGATAGCGTATCGAAGGGTAGGCCATC
ATGCCGGCGCCTGTGGACACCGCTGCCCCGTACCCCCGCGCCCTGCCGCA
GGCTACAACGGCAACCTGTTCGAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7539:3536..5259+

>mRNA_H-canaliculatus_M_contigs7539.1.1 ID=mRNA_H-canaliculatus_M_contigs7539.1.1|Name=mRNA_H-canaliculatus_M_contigs7539.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=339bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7539:3536..5259+ (Hapterophycus canaliculatus Oshoro7m male)
GGACCGCTCAGCCGCGGGCAGTGCGTCGCATCTGCAATGTCGGCTGCCGC
GGGGCTAGTAGCGGCGGCGGCAGGGGCAGGGGCGCGCGATGCGCCGAGGA
CTCCCCCACGGGCCCGGATGCCGGATGGGGACACCCAGGGTACCGACTAC
ATGGAGCTCGGCGGGGGAAGCAAGAGCTTCGCGAAGCCGCGCATCCGTTA
CGCAGATTTCAAAGATCTGGAGAACGGTATCCAGTACAAGGATGCCAAGA
TCGGGGCGGGCAGGGCAGCCTCGGAGGGCGACAGGGTCGTCTTTGACTGG
GAGGGTTACACGATCGGCTACAACGGCAACCTGTTCGAG
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