mRNA_H-canaliculatus_M_contigs75387.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75387.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75387.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75387.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD62_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 1.760e-25
Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = 1 
Query:    4 IQSWEAHTDYIRYLEVHPTLPYVLSASDDMSVKLWDWERQWDCTQVRGG 150
            IQ+WEAHTDYIRYLEVHPTLPYVLSASDDMSVKLWDWERQWDCTQV  G
Sbjct:  125 IQAWEAHTDYIRYLEVHPTLPYVLSASDDMSVKLWDWERQWDCTQVFEG 173
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75387.1.1 vs.
Match: Coatomer (WD associated region-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRX4_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 9.860e-21
Identity = 37/50 (74.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:    1 QIQSWEAHTDYIRYLEVHPTLPYVLSASDDMSVKLWDWERQWDCTQVRGG 150
            ++ +WEAHTDYIR++EVHP LPYVLS SDDMS+KLWDWER WDC QV  G
Sbjct:   91 KVNAWEAHTDYIRFVEVHPNLPYVLSCSDDMSIKLWDWERGWDCCQVFEG 140
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75387.1.1 vs.
Match: Hypothetical (protein (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1Y0J4_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.630e-19
Identity = 35/53 (66.04%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:    1 QIQSWE-AHTDYIRYLEVHPTLPYVLSASDDMSVKLWDWERQWDCTQVRGGEG 156
            ++++WE AH DYIRY+EVHPTLPYVL++SDD+++KLWDWE+ WDCT V  G G
Sbjct:   91 KVKAWERAHDDYIRYIEVHPTLPYVLTSSDDLTIKLWDWEKNWDCTNVFEGHG 143
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75387.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXQ5_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 4.150e-19
Identity = 33/50 (66.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:    1 QIQSWEAHTDYIRYLEVHPTLPYVLSASDDMSVKLWDWERQWDCTQVRGG 150
            ++ +WEAHTDYIR+LEVHP+LP +LS+SDDM+++LWDWE+ WDC QV  G
Sbjct:   91 KVHAWEAHTDYIRFLEVHPSLPNILSSSDDMTIRLWDWEKNWDCIQVFEG 140
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75387.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZMX6_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 5.460e-19
Identity = 30/45 (66.67%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:    1 QIQSWEAHTDYIRYLEVHPTLPYVLSASDDMSVKLWDWERQWDCT 135
            +++  EAH DYIR++E+HPTLPY+LS+SDDMS+KLW+WE+ WDCT
Sbjct:   23 KVKDMEAHADYIRFVEIHPTLPYILSSSDDMSIKLWNWEQNWDCT 67
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75387.1.1 vs.
Match: Uncharacterized (protein AlNc14C44G3643 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WAB4_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 7.730e-19
Identity = 36/52 (69.23%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:    1 QIQSWEAHTDYIRYLEVHPTLPYVLSASDDMSVKLWDWERQWDCTQVRGGEG 156
            +I S+EAHTDYIR+LEVHP+LP VLS +DDMS+K+WDWE+ W CTQV  G G
Sbjct:   52 KITSFEAHTDYIRHLEVHPSLPCVLSCADDMSIKMWDWEKGWSCTQVFDGHG 103
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75387.1.1 vs.
Match: Coatomer (subunit beta'-2-like (Fragment) n=2 Tax=Pentapetalae TaxID=1437201 RepID=A0A392PJT1_9FABA)

HSP 1 Score: 81.3 bits (199), Expect = 1.040e-18
Identity = 33/50 (66.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:    1 QIQSWEAHTDYIRYLEVHPTLPYVLSASDDMSVKLWDWERQWDCTQVRGG 150
            +++ +EAHTDYIR + VHPTLPYVLS+SDDM +KLWDWE+ W CTQ+  G
Sbjct:   31 KVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWICTQIFEG 80
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75387.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D8T3_CYCTE)

HSP 1 Score: 81.6 bits (200), Expect = 1.600e-18
Identity = 32/50 (64.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:    1 QIQSWEAHTDYIRYLEVHPTLPYVLSASDDMSVKLWDWERQWDCTQVRGG 150
            +++ +EAH DYIR LE+HP+LPYVLS+SDDM++KLWDW+R +DCTQ+  G
Sbjct:   52 KVKEFEAHADYIRSLEIHPSLPYVLSSSDDMTIKLWDWDRGFDCTQLFEG 101
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75387.1.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YT62_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 6.310e-18
Identity = 33/52 (63.46%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:    1 QIQSWEAHTDYIRYLEVHPTLPYVLSASDDMSVKLWDWERQWDCTQVRGGEG 156
            ++ +++AHTDYIRYLEVHP LP VLS +DDM+VK+WDW++ W CTQV  G G
Sbjct:   91 KVTAFDAHTDYIRYLEVHPVLPIVLSCADDMTVKMWDWDKNWLCTQVFEGHG 142
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75387.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Brassica oleracea TaxID=3712 RepID=A0A3P6AUD0_BRAOL)

HSP 1 Score: 79.3 bits (194), Expect = 7.990e-18
Identity = 32/50 (64.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:    1 QIQSWEAHTDYIRYLEVHPTLPYVLSASDDMSVKLWDWERQWDCTQVRGG 150
            +++ +EAH+DYIR + VHPTLPYVLS+SDDM +KLWDWE  W CTQ+  G
Sbjct:   13 KVKVFEAHSDYIRCVAVHPTLPYVLSSSDDMLIKLWDWENGWACTQIFEG 62
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75387.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized1.760e-2593.88protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Coatomer9.860e-2174.00WD associated region-domain-containing protein n=1... [more]
Hypothetical1.630e-1966.04protein (Fragment) n=2 Tax=Phaeomonas parva TaxID=... [more]
Hypothetical4.150e-1966.00protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
Hypothetical5.460e-1966.67protein n=1 Tax=Pelagomonas calceolata TaxID=35677... [more]
Uncharacterized7.730e-1969.23protein AlNc14C44G3643 n=1 Tax=Albugo laibachii Nc... [more]
Coatomer1.040e-1866.00subunit beta'-2-like (Fragment) n=2 Tax=Pentapetal... [more]
Hypothetical1.600e-1864.00protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID... [more]
Uncharacterized6.310e-1863.46protein (Fragment) n=1 Tax=Achlya hypogyna TaxID=1... [more]
Uncharacterized7.990e-1864.00protein n=1 Tax=Brassica oleracea TaxID=3712 RepID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75387contigH-canaliculatus_M_contigs75387:46..201 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog653948.CCA18084
PFAMsCoatomer_WDAD,WD40
Model size156
Max annot lvl2759|Eukaryota
KEGG koko:K17302
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005798,GO:0006810,GO:0006886,GO:0006888,GO:0006890,GO:0006891,GO:0008104,GO:0008150,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0030117,GO:0030120,GO:0030126,GO:0030135,GO:0030137,GO:0030659,GO:0030660,GO:0030662,GO:0030663,GO:0031090,GO:0031410,GO:0031982,GO:0032991,GO:0033036,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0048475,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0097708,GO:0098588,GO:0098796,GO:0098805
Exons1
Evalue1.27e-19
EggNOG OGsKOG0276@1|root,KOG0276@2759|Eukaryota
DescriptionThe coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
Cds size156
COG categoryU
BRITEko00000,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854091.0002787-CDS-H-canaliculatus_M_contigs75387:45..2011696854091.0002787-CDS-H-canaliculatus_M_contigs75387:45..201Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75387 46..201 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75387.1.1prot_H-canaliculatus_M_contigs75387.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75387 46..201 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75387.1.1

>prot_H-canaliculatus_M_contigs75387.1.1 ID=prot_H-canaliculatus_M_contigs75387.1.1|Name=mRNA_H-canaliculatus_M_contigs75387.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=52bp
QIQSWEAHTDYIRYLEVHPTLPYVLSASDDMSVKLWDWERQWDCTQVRGG
EG
back to top

mRNA from alignment at H-canaliculatus_M_contigs75387:46..201-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75387.1.1 ID=mRNA_H-canaliculatus_M_contigs75387.1.1|Name=mRNA_H-canaliculatus_M_contigs75387.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=156bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75387:46..201- (Hapterophycus canaliculatus Oshoro7m male)
CAGATCCAGTCGTGGGAGGCCCACACCGACTACATCCGCTACCTGGAGGT
GCACCCGACGCTGCCGTACGTCCTCTCCGCCTCGGACGACATGAGCGTCA
AGCTGTGGGACTGGGAGAGGCAGTGGGACTGCACACAGGTGAGAGGCGGG
GAGGGC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75387:46..201-

>mRNA_H-canaliculatus_M_contigs75387.1.1 ID=mRNA_H-canaliculatus_M_contigs75387.1.1|Name=mRNA_H-canaliculatus_M_contigs75387.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=156bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75387:46..201- (Hapterophycus canaliculatus Oshoro7m male)
CAGATCCAGTCGTGGGAGGCCCACACCGACTACATCCGCTACCTGGAGGT
GCACCCGACGCTGCCGTACGTCCTCTCCGCCTCGGACGACATGAGCGTCA
AGCTGTGGGACTGGGAGAGGCAGTGGGACTGCACACAGGTGAGAGGCGGG
GAGGGC
back to top