mRNA_H-canaliculatus_M_contigs75385.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75385.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75385.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs75385.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G622_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 3.680e-26
Identity = 53/93 (56.99%), Postives = 71/93 (76.34%), Query Frame = 1 
Query:    1 AERGRDRLLAARKKVRWAMVFCAQMSLQAYALLIFSVCTEYGTAGPMILFGIQMTILPLIWHIVHIELHAGRSKPAA--RRGGGGQRAGARVI 273
            +E G   L AA++KVRWAM FCA MSLQ YA+L+FS+ ++YGT+ P+ILFG+QMTI+PL+WH  +I+LHAGRS+ +A  RR  G  R G R +
Sbjct:  215 SELGDGELQAAKRKVRWAMGFCAHMSLQGYAILLFSIFSKYGTSMPLILFGVQMTIVPLVWHAFNIQLHAGRSRGSAIGRRSSGVDRGGRRYV 307
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BLAST of mRNA_H-canaliculatus_M_contigs75385.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCQ2_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.320e-22
Identity = 48/93 (51.61%), Postives = 66/93 (70.97%), Query Frame = 1 
Query:    1 AERGRDRLLAARKKVRWAMVFCAQMSLQAYALLIFSVCTEYGTAGPMILFGIQMTILPLIWHIVHIELHAGRSKPAA--RRGGGGQRAGARVI 273
            +E G   L AA++KVRW MVFCA MSL+ YA+L+ S+ ++YGT  P+ILFG+QM I PL+WH  +I+LHAGRS+ +A  RR     + G R +
Sbjct:  213 SELGGGELQAAKRKVRWVMVFCALMSLEGYAILLLSILSKYGTTVPLILFGVQMAIFPLVWHAFNIQLHAGRSRGSAIGRRSSSVDQGGRRYV 305
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75385.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized3.680e-2656.99protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.320e-2251.61protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75385contigH-canaliculatus_M_contigs75385:259..531 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Model size273
Hectar predicted targeting categorysignal anchor
Exons1
Cds size273
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854090.9581609-CDS-H-canaliculatus_M_contigs75385:258..5311696854090.9581609-CDS-H-canaliculatus_M_contigs75385:258..531Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75385 259..531 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75385.1.1prot_H-canaliculatus_M_contigs75385.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75385 259..531 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75385.1.1

>prot_H-canaliculatus_M_contigs75385.1.1 ID=prot_H-canaliculatus_M_contigs75385.1.1|Name=mRNA_H-canaliculatus_M_contigs75385.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=91bp
AERGRDRLLAARKKVRWAMVFCAQMSLQAYALLIFSVCTEYGTAGPMILF
GIQMTILPLIWHIVHIELHAGRSKPAARRGGGGQRAGARVI
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mRNA from alignment at H-canaliculatus_M_contigs75385:259..531-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75385.1.1 ID=mRNA_H-canaliculatus_M_contigs75385.1.1|Name=mRNA_H-canaliculatus_M_contigs75385.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=273bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75385:259..531- (Hapterophycus canaliculatus Oshoro7m male)
GCGGAGAGGGGGCGGGACCGGCTCCTGGCGGCGAGGAAAAAGGTCAGATG
GGCCATGGTTTTCTGCGCCCAGATGAGCCTCCAGGCGTACGCGCTGCTTA
TATTTTCCGTGTGTACCGAGTACGGGACAGCCGGCCCGATGATCCTGTTC
GGGATCCAGATGACAATTCTGCCTCTGATTTGGCACATTGTCCACATAGA
GCTGCACGCCGGCCGGAGCAAGCCAGCGGCAAGAAGAGGAGGGGGTGGGC
AAAGGGCGGGGGCGCGGGTGATC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75385:259..531-

>mRNA_H-canaliculatus_M_contigs75385.1.1 ID=mRNA_H-canaliculatus_M_contigs75385.1.1|Name=mRNA_H-canaliculatus_M_contigs75385.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=273bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75385:259..531- (Hapterophycus canaliculatus Oshoro7m male)
GCGGAGAGGGGGCGGGACCGGCTCCTGGCGGCGAGGAAAAAGGTCAGATG
GGCCATGGTTTTCTGCGCCCAGATGAGCCTCCAGGCGTACGCGCTGCTTA
TATTTTCCGTGTGTACCGAGTACGGGACAGCCGGCCCGATGATCCTGTTC
GGGATCCAGATGACAATTCTGCCTCTGATTTGGCACATTGTCCACATAGA
GCTGCACGCCGGCCGGAGCAAGCCAGCGGCAAGAAGAGGAGGGGGTGGGC
AAAGGGCGGGGGCGCGGGTGATC
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