mRNA_H-canaliculatus_M_contigs7538.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7538.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7538.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7538.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJJ8_ECTSI)

HSP 1 Score: 281 bits (719), Expect = 2.800e-92
Identity = 148/182 (81.32%), Postives = 162/182 (89.01%), Query Frame = 1 
Query:    1 QNEAPVLYPRMDLPGPIRIMDEDVSHVAKQRELAADIVKSVYYITPKYAIKDVERYSDGLHSSGCQGQSLASQLSAGMKRYLPPELTDRPAIGANAAAGKLPGLKPLPAFDAKSLTALEDRERKSAETAGAEKXXXXXXXDTGVLSDIEAEVXXXXXXDDYAVDHYESGDESAGDDEPAAVF 546
            Q+EAPVLYPRMDLPGPIRI+++DVSHVAKQRELAAD+ KS+YYITPKYA+KDVERYSDG+HS G +GQSLASQLSAGMKR+LPPELTDRPAIG  AA GKLPGLKPLPAFD KSLTALED+ERKSAET GAEK       D G+LSD+EAEV  XXXX DYAVDHYESG+ES GDDEPAAVF
Sbjct:    5 QSEAPVLYPRMDLPGPIRILEDDVSHVAKQRELAADMSKSIYYITPKYAVKDVERYSDGVHSGGYRGQSLASQLSAGMKRHLPPELTDRPAIGTTAAGGKLPGLKPLPAFDGKSLTALEDKERKSAETGGAEKEKDKE--DAGMLSDVEAEVEEXXXXXDYAVDHYESGNESGGDDEPAAVF 184
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7538.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized2.800e-9281.32protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJJ8... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7538contigH-canaliculatus_M_contigs7538:605..1572 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Model size968
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionDNA-directed RNA polymerase III, subunit Rpc31
Ec32 orthologEc-04_006380.1
Cds size519
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854090.8990967-UTR-H-canaliculatus_M_contigs7538:604..10231696854090.8990967-UTR-H-canaliculatus_M_contigs7538:604..1023Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs7538 605..1023 -
1696854090.9244773-UTR-H-canaliculatus_M_contigs7538:1542..15721696854090.9244773-UTR-H-canaliculatus_M_contigs7538:1542..1572Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs7538 1543..1572 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854090.9106925-CDS-H-canaliculatus_M_contigs7538:1023..15421696854090.9106925-CDS-H-canaliculatus_M_contigs7538:1023..1542Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7538 1024..1542 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7538.1.1prot_H-canaliculatus_M_contigs7538.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7538 1024..1542 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7538.1.1

>prot_H-canaliculatus_M_contigs7538.1.1 ID=prot_H-canaliculatus_M_contigs7538.1.1|Name=mRNA_H-canaliculatus_M_contigs7538.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=173bp
MDLPGPIRIMDEDVSHVAKQRELAADIVKSVYYITPKYAIKDVERYSDGL
HSSGCQGQSLASQLSAGMKRYLPPELTDRPAIGANAAAGKLPGLKPLPAF
DAKSLTALEDRERKSAETAGAEKEKEKDKDDTGVLSDIEAEVEEEEQDDD
YAVDHYESGDESAGDDEPAAVF*
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mRNA from alignment at H-canaliculatus_M_contigs7538:605..1572-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7538.1.1 ID=mRNA_H-canaliculatus_M_contigs7538.1.1|Name=mRNA_H-canaliculatus_M_contigs7538.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=968bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7538:605..1572- (Hapterophycus canaliculatus Oshoro7m male)
CAGAACGAGGCGCCTGTTCTGTACCCTCGGATGGATCTGCCGGGCCCCAT
TCGAATCATGGACGAGGATGTTAGCCACGTCGCAAAGCAGAGAGAGCTGG
CTGCAGACATCGTGAAGTCCGTTTACTACATCACCCCCAAGTATGCTATC
AAGGACGTGGAGAGGTACTCTGACGGCCTTCACTCAAGTGGATGCCAGGG
GCAATCGCTCGCCAGCCAATTGTCGGCGGGGATGAAGCGATATCTACCGC
CAGAGCTTACGGACAGGCCAGCGATTGGAGCGAACGCAGCTGCTGGAAAG
TTGCCGGGCCTCAAACCCTTGCCAGCATTCGACGCCAAGTCACTCACAGC
TTTGGAAGACAGAGAGCGAAAAAGCGCGGAAACAGCCGGGGCGGAGAAGG
AAAAGGAGAAAGACAAGGACGATACGGGTGTTTTGAGCGACATCGAGGCG
GAGGTGGAGGAGGAAGAGCAGGACGACGATTATGCCGTTGATCATTACGA
GAGCGGGGACGAGAGTGCGGGAGACGACGAACCGGCAGCTGTATTCTAAA
CGTACAACGTCCCAGTTTTGCGTGTGCTCACATGCGTTCTTCAGACGGTT
TTGACGCGGGGTATATTTTTCTTCCTCGTCTGTTGTGTTCGTGTAGTCTG
ACCGCCCTTGTGTTGCACGGTCGGATCGATATGTGATATTGTTCGGCTTG
CCTTGAGAGATGAAACAAAAAGTTCCTCGCGGTACGTCGGAAGCGAGCGA
TTTGCGATGTTCCTTGTCTCGTGTTATCCCCGTTGATCAACGATCCGCAC
AACATGGCAGCGATTCACGGGGAAACGTACACGCTTGCGGGTTTGTGTGT
TAGTCTCTAGTCTCATAAAGTTCCGCATCCTCTCTTCTTGTGGCCTCCTT
TAGAGACGATGAGAAAACGTTGATGAGAGAAGTTTTAGTCTCCTGTCGCA
CCCCACATCTCCCACACC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7538:605..1572-

>mRNA_H-canaliculatus_M_contigs7538.1.1 ID=mRNA_H-canaliculatus_M_contigs7538.1.1|Name=mRNA_H-canaliculatus_M_contigs7538.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=519bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7538:605..1572- (Hapterophycus canaliculatus Oshoro7m male)
ATGGATCTGCCGGGCCCCATTCGAATCATGGACGAGGATGTTAGCCACGT
CGCAAAGCAGAGAGAGCTGGCTGCAGACATCGTGAAGTCCGTTTACTACA
TCACCCCCAAGTATGCTATCAAGGACGTGGAGAGGTACTCTGACGGCCTT
CACTCAAGTGGATGCCAGGGGCAATCGCTCGCCAGCCAATTGTCGGCGGG
GATGAAGCGATATCTACCGCCAGAGCTTACGGACAGGCCAGCGATTGGAG
CGAACGCAGCTGCTGGAAAGTTGCCGGGCCTCAAACCCTTGCCAGCATTC
GACGCCAAGTCACTCACAGCTTTGGAAGACAGAGAGCGAAAAAGCGCGGA
AACAGCCGGGGCGGAGAAGGAAAAGGAGAAAGACAAGGACGATACGGGTG
TTTTGAGCGACATCGAGGCGGAGGTGGAGGAGGAAGAGCAGGACGACGAT
TATGCCGTTGATCATTACGAGAGCGGGGACGAGAGTGCGGGAGACGACGA
ACCGGCAGCTGTATTCTAA
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