mRNA_H-canaliculatus_M_contigs7536.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7536.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7536.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7536.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7536contigH-canaliculatus_M_contigs7536:875..1942 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Model size284
Hectar predicted targeting categoryother localisation
Exons2
Cds size282
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854090.7735808-CDS-H-canaliculatus_M_contigs7536:874..10141696854090.7735808-CDS-H-canaliculatus_M_contigs7536:874..1014Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7536 875..1014 +
1696854090.7848327-CDS-H-canaliculatus_M_contigs7536:1800..19421696854090.7848327-CDS-H-canaliculatus_M_contigs7536:1800..1942Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7536 1801..1942 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7536.1.1prot_H-canaliculatus_M_contigs7536.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7536 875..1942 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7536.1.1

>prot_H-canaliculatus_M_contigs7536.1.1 ID=prot_H-canaliculatus_M_contigs7536.1.1|Name=mRNA_H-canaliculatus_M_contigs7536.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=94bp
MVKLRPRVQRTISNQGFPQSTDNFLRARRQNNKDQIIRENAEEMRPRNIH
SSAIGSARAPTVPPVACLRLLGSVVLLCVAPFAHAHLGEEKIDC
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mRNA from alignment at H-canaliculatus_M_contigs7536:875..1942+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7536.1.1 ID=mRNA_H-canaliculatus_M_contigs7536.1.1|Name=mRNA_H-canaliculatus_M_contigs7536.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1068bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7536:875..1942+ (Hapterophycus canaliculatus Oshoro7m male)
ATGGTCAAACTACGCCCACGTGTACAGAGGACCATCAGCAACCAAGGTTT
TCCACAATCGACCGACAACTTTCTTCGAGCGAGGCGACAAAATAATAAGG
ACCAAATAATTAGAGAGAACGCCGAAGAGATGAGACCCAGGTACAGCACA
GCAATACAACAATTCCGAGTTCCGAATTCACGTGATGTGCATTCTAAGCA
ACCGCGTGTTCACATCATCACATTCTTGCAAGGAACTCCTCAGGTCTGAT
CGGTGGTGGGATGCGACATTCATGTGCTGTATTAGCATCAAACTGTGACG
AACGGTTCGTGCACGACATGCATGCGTGCCTGGAGTTACTTGACTCGATT
AGGGCAGCGCGTTTCGTTAACAATCGGTGTGTTTCTGTTTGGAGCTACTG
TGTCCCAGCCGAGCTTGTATGGACGCATTGCGGACACTGCGCCGTCCATC
TCATTAACTTCCTGGACGTCTTTCTCTCGAAGGGGTAAACGTGTTCCGAG
CCTGGATTATGTACTTGCAATAGCCTTCACTATACTGTGGTACTTGTCAC
AGCACAAGATAAATGCTGAAGCCTGTCAAGTCCTACTGCTCCCTTGTTGC
TCCTCACACCCCTTGCACACGGAGAATGGAAGACAGCAAGTTGCTTCAAC
CCACTTAAATACGTCGTACTGTTCAGAACCCGAAGTCATGCATCGTACAT
GTACTTGATCGTTGAGTGTGCTGTATCATCTCCATCCGATTGAACGTTTC
AATATTATTAGCGGCCTTTACGGGGGTTTGAGTCTTGCCTTCAAACTCAG
GATCTTGTGGCGCACTGAATGCATCAATGAATGCTACCGCATTGCATTCT
ACAAGGCAGACAATGAGACATGCACCTGGAACCATTCTTTCAGCCGTTAA
CCGTGACGTAGTTTGAATCACCCTAGGAACATACATTCCAGTGCCATTGG
AAGCGCACGAGCTCCTACAGTTCCCCCAGTGGCGTGCCTGAGACTCCTCG
GAAGCGTCGTGCTCCTCTGCGTCGCGCCCTTTGCTCACGCGCACCTGGGC
GAAGAAAAAATCGATTGT
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7536:875..1942+

>mRNA_H-canaliculatus_M_contigs7536.1.1 ID=mRNA_H-canaliculatus_M_contigs7536.1.1|Name=mRNA_H-canaliculatus_M_contigs7536.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=282bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7536:875..1942+ (Hapterophycus canaliculatus Oshoro7m male)
ATGGTCAAACTACGCCCACGTGTACAGAGGACCATCAGCAACCAAGGTTT
TCCACAATCGACCGACAACTTTCTTCGAGCGAGGCGACAAAATAATAAGG
ACCAAATAATTAGAGAGAACGCCGAAGAGATGAGACCCAGGAACATACAT
TCCAGTGCCATTGGAAGCGCACGAGCTCCTACAGTTCCCCCAGTGGCGTG
CCTGAGACTCCTCGGAAGCGTCGTGCTCCTCTGCGTCGCGCCCTTTGCTC
ACGCGCACCTGGGCGAAGAAAAAATCGATTGT
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