mRNA_H-canaliculatus_M_contigs75359.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75359.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75359.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs75359.1.1 vs.
Match: Helicase (ATP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L357_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 7.410e-23
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1 
Query:    7 VQPELFQALFPFELDPFQTEALRGLAGRNNVIVSAPTGSGKTVVGELAV 153
            VQPELFQALFPFELDPFQTEALRGLAGRNNVIVSAPTGSGKTVVGELAV
Sbjct:   35 VQPELFQALFPFELDPFQTEALRGLAGRNNVIVSAPTGSGKTVVGELAV 83
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BLAST of mRNA_H-canaliculatus_M_contigs75359.1.1 vs.
Match: DEAD (box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G373_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 1.650e-22
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1 
Query:    7 VQPELFQALFPFELDPFQTEALRGLAGRNNVIVSAPTGSGKTVVGELAV 153
            VQPELFQALFPFELDPFQTEALRGLAGRNNVIVSAPTGSGKTVVGELAV
Sbjct:  377 VQPELFQALFPFELDPFQTEALRGLAGRNNVIVSAPTGSGKTVVGELAV 425
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BLAST of mRNA_H-canaliculatus_M_contigs75359.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z819_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 2.650e-13
Identity = 36/50 (72.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    4 KVQPELFQALFPFELDPFQTEALRGLAGRNNVIVSAPTGSGKTVVGELAV 153
            +V+ ELF ALFPF+LD FQ EAL  L  R NVIVSAPTGSGKTV GELA+
Sbjct:  109 EVRSELFHALFPFDLDGFQLEALDALGARKNVIVSAPTGSGKTVAGELAI 158
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BLAST of mRNA_H-canaliculatus_M_contigs75359.1.1 vs.
Match: Uncharacterized (protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D0G8_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 4.400e-12
Identity = 33/50 (66.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    4 KVQPELFQALFPFELDPFQTEALRGLAGRNNVIVSAPTGSGKTVVGELAV 153
            +V+ E F+A+FPF LD FQ  AL  L GR NV+VSAPTGSGKTV GELA+
Sbjct:  156 EVKREFFKAIFPFPLDDFQLAALDALGGRENVVVSAPTGSGKTVAGELAI 205
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BLAST of mRNA_H-canaliculatus_M_contigs75359.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DG78_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 3.920e-11
Identity = 32/46 (69.57%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:   16 ELFQALFPFELDPFQTEALRGLAGRNNVIVSAPTGSGKTVVGELAV 153
            ELF+ALF F+LD FQ EAL+ L  R +V+VSAPTGSGKTV GELA+
Sbjct:  134 ELFRALFSFDLDSFQLEALQALGTRRSVVVSAPTGSGKTVAGELAI 179
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BLAST of mRNA_H-canaliculatus_M_contigs75359.1.1 vs.
Match: Uncharacterized (protein n=5 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EJS4_VITBC)

HSP 1 Score: 63.9 bits (154), Expect = 1.370e-10
Identity = 31/46 (67.39%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:   16 ELFQALFPFELDPFQTEALRGLAGRNNVIVSAPTGSGKTVVGELAV 153
            EL +ALFPF LD FQ EALR +    NVIVSAPTGSGKTV+ E+A+
Sbjct:   43 ELMKALFPFTLDAFQVEALRSILKSRNVIVSAPTGSGKTVISEMAI 88
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BLAST of mRNA_H-canaliculatus_M_contigs75359.1.1 vs.
Match: RNA (helicase (Fragment) n=1 Tax=Carbonactinospora thermoautotrophica TaxID=1469144 RepID=A0A132NI70_9ACTN)

HSP 1 Score: 61.6 bits (148), Expect = 8.910e-10
Identity = 29/44 (65.91%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:   22 FQALFPFELDPFQTEALRGLAGRNNVIVSAPTGSGKTVVGELAV 153
            F+ L+PFELDPFQ +A R L   + V+V+APTGSGKTVVGE AV
Sbjct:   38 FRELYPFELDPFQVDACRALEAGHGVLVAAPTGSGKTVVGEFAV 81
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BLAST of mRNA_H-canaliculatus_M_contigs75359.1.1 vs.
Match: Putative (helicase n=4 Tax=Carbonactinospora thermoautotrophica TaxID=1469144 RepID=A0A132N891_9ACTN)

HSP 1 Score: 61.6 bits (148), Expect = 8.930e-10
Identity = 29/44 (65.91%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:   22 FQALFPFELDPFQTEALRGLAGRNNVIVSAPTGSGKTVVGELAV 153
            F+ L+PFELDPFQ +A R L   + V+V+APTGSGKTVVGE AV
Sbjct:   27 FRELYPFELDPFQVDACRALEAGHGVLVAAPTGSGKTVVGEFAV 70
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BLAST of mRNA_H-canaliculatus_M_contigs75359.1.1 vs.
Match: Hypothetical (protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SQC5_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.220e-9
Identity = 30/44 (68.18%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:   22 FQALFPFELDPFQTEALRGLAGRNNVIVSAPTGSGKTVVGELAV 153
            + + FPFELD +Q EALR L   +NVIVSAPTGSGKTV GELA+
Sbjct:  120 YASCFPFELDEYQIEALRHLRNDSNVIVSAPTGSGKTVAGELAI 163
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BLAST of mRNA_H-canaliculatus_M_contigs75359.1.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GQY3_9ALVE)

HSP 1 Score: 60.8 bits (146), Expect = 1.670e-9
Identity = 31/45 (68.89%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:   16 ELFQALFPFELDPFQTEALRGLAGRNNVIVSAPTGSGKTVVGELA 150
            E+  AL+PFELD FQ E+L  L    NVIV+APTGSGKTVVGELA
Sbjct:  185 EVLAALYPFELDDFQQESLDALLKDENVIVAAPTGSGKTVVGELA 229
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75359.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Helicase7.410e-23100.00ATP-binding domain-containing protein n=1 Tax=Ecto... [more]
DEAD1.650e-22100.00box helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
Uncharacterized2.650e-1372.00protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Uncharacterized4.400e-1266.00protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID... [more]
Hypothetical3.920e-1169.57protein n=1 Tax=Dictyocha speculum TaxID=35687 Rep... [more]
Uncharacterized1.370e-1067.39protein n=5 Tax=Vitrella brassicaformis TaxID=1169... [more]
RNA8.910e-1065.91helicase (Fragment) n=1 Tax=Carbonactinospora ther... [more]
Putative8.930e-1065.91helicase n=4 Tax=Carbonactinospora thermoautotroph... [more]
Hypothetical1.220e-968.18protein n=2 Tax=Pelagomonas calceolata TaxID=35677... [more]
Uncharacterized1.670e-968.89protein (Fragment) n=1 Tax=Chromera velia CCMP2878... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75359contigH-canaliculatus_M_contigs75359:3..155 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G373
PFAMsDEAD,DSHCT,Helicase_C
Model size153
Max annot lvl2759|Eukaryota
KEGG koko:K12599
KEGG Pathwayko03018,map03018
KEGG ModuleM00392
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000373,GO:0000375,GO:0000377,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006810,GO:0007275,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009790,GO:0009791,GO:0009793,GO:0009892,GO:0009987,GO:0010154,GO:0010467,GO:0010468,GO:0010494,GO:0010496,GO:0010497,GO:0010501,GO:0010605,GO:0010608,GO:0010629,GO:0016070,GO:0016071,GO:0016441,GO:0016458,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0022414,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034641,GO:0035770,GO:0036464,GO:0040029,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048316,GO:0048519,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0051179,GO:0051234,GO:0060255,GO:0061458,GO:0065007,GO:0070013,GO:0070035,GO:0071704,GO:0090304,GO:0097159,GO:0140098,GO:1901360,GO:1901363,GO:1990904
Exons1
Evalue2.7e-23
EggNOG OGsCOG4581@1|root,KOG0947@2759|Eukaryota
Descriptionnuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay
Cds size153
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854090.7405741-CDS-H-canaliculatus_M_contigs75359:2..1551696854090.7405741-CDS-H-canaliculatus_M_contigs75359:2..155Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75359 3..155 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75359.1.1prot_H-canaliculatus_M_contigs75359.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75359 3..155 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75359.1.1

>prot_H-canaliculatus_M_contigs75359.1.1 ID=prot_H-canaliculatus_M_contigs75359.1.1|Name=mRNA_H-canaliculatus_M_contigs75359.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=51bp
MKVQPELFQALFPFELDPFQTEALRGLAGRNNVIVSAPTGSGKTVVGELA
V
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mRNA from alignment at H-canaliculatus_M_contigs75359:3..155-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75359.1.1 ID=mRNA_H-canaliculatus_M_contigs75359.1.1|Name=mRNA_H-canaliculatus_M_contigs75359.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=153bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75359:3..155- (Hapterophycus canaliculatus Oshoro7m male)
ATGAAGGTGCAACCGGAGCTTTTCCAGGCGCTGTTCCCCTTCGAGCTGGA
CCCCTTCCAGACGGAGGCCCTGAGGGGCCTCGCAGGCAGGAACAACGTCA
TCGTGTCGGCTCCCACCGGGAGCGGGAAGACGGTGGTGGGAGAGCTTGCG
GTC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75359:3..155-

>mRNA_H-canaliculatus_M_contigs75359.1.1 ID=mRNA_H-canaliculatus_M_contigs75359.1.1|Name=mRNA_H-canaliculatus_M_contigs75359.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=153bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75359:3..155- (Hapterophycus canaliculatus Oshoro7m male)
ATGAAGGTGCAACCGGAGCTTTTCCAGGCGCTGTTCCCCTTCGAGCTGGA
CCCCTTCCAGACGGAGGCCCTGAGGGGCCTCGCAGGCAGGAACAACGTCA
TCGTGTCGGCTCCCACCGGGAGCGGGAAGACGGTGGTGGGAGAGCTTGCG
GTC
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