mRNA_H-canaliculatus_M_contigs7535.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7535.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7535.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7535.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE27_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 7.180e-46
Identity = 81/114 (71.05%), Postives = 91/114 (79.82%), Query Frame = 1 
Query:    1 VRGGLEVAILDSPEQSDWMNVKHTNGSTELSCQRCKVPRSQLGNPAYDVRKNGRTAEGVDRDIEYVKEGETGTERTVRGRKRGVVPPRVPNPLKKLTFDRQLQIPFDILHLDAL 342
            VRGGL+  ILDSPE SD  N K+ NG T  SCQRCKVPR  LGNP YD+R+N RTAEGVD DIEYVK+G T TER  R ++RGVV P+V NPLKKLTFDRQLQ+PFDILH D+L
Sbjct:  455 VRGGLQGLILDSPEHSDRTNTKNANGCTLRSCQRCKVPRRHLGNPRYDIRQNRRTAEGVDADIEYVKQGATKTERVERAKQRGVVVPKVSNPLKKLTFDRQLQVPFDILHADSL 568
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7535.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTN6_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 6.450e-40
Identity = 76/114 (66.67%), Postives = 86/114 (75.44%), Query Frame = 1 
Query:    1 VRGGLEVAILDSPEQSDWMNVKHTNGSTELSCQRCKVPRSQLGNPAYDVRKNGRTAEGVDRDIEYVKEGETGTERTVRGRKRGVVPPRVPNPLKKLTFDRQLQIPFDILHLDAL 342
            VRG L+  ILDSPE SD  N K+ NG T  SCQRCKVPR  LGNP YD+R+N RTAEGVD +IEYVK+G T TE   R ++RGVV P+V    KKLTFDRQLQIPFDILH D+L
Sbjct:  238 VRGRLQGLILDSPEHSDRTNTKNANGCTLRSCQRCKVPRRHLGNPRYDIRQNRRTAEGVDANIEYVKQGATKTEGVERAKQRGVVVPKVS---KKLTFDRQLQIPFDILHADSL 348
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7535.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized7.180e-4671.05protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized6.450e-4066.67protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7535contigH-canaliculatus_M_contigs7535:3573..3914 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog588596.U9UVI7
Model size342
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.97e-05
EggNOG OGs2CWZ5@1|root,2RVSP@2759|Eukaryota,39W1T@33154|Opisthokonta,3NZZ6@4751|Fungi
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_007450.1
Cds size342
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854090.696791-CDS-H-canaliculatus_M_contigs7535:3572..39141696854090.696791-CDS-H-canaliculatus_M_contigs7535:3572..3914Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7535 3573..3914 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7535.1.1prot_H-canaliculatus_M_contigs7535.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7535 3573..3914 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7535.1.1

>prot_H-canaliculatus_M_contigs7535.1.1 ID=prot_H-canaliculatus_M_contigs7535.1.1|Name=mRNA_H-canaliculatus_M_contigs7535.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=114bp
VRGGLEVAILDSPEQSDWMNVKHTNGSTELSCQRCKVPRSQLGNPAYDVR
KNGRTAEGVDRDIEYVKEGETGTERTVRGRKRGVVPPRVPNPLKKLTFDR
QLQIPFDILHLDAL
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mRNA from alignment at H-canaliculatus_M_contigs7535:3573..3914+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7535.1.1 ID=mRNA_H-canaliculatus_M_contigs7535.1.1|Name=mRNA_H-canaliculatus_M_contigs7535.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=342bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7535:3573..3914+ (Hapterophycus canaliculatus Oshoro7m male)
GTACGAGGAGGACTGGAAGTAGCAATTCTCGACTCTCCGGAGCAAAGCGA
CTGGATGAACGTGAAGCACACAAATGGGAGCACCGAACTGTCCTGCCAGC
GCTGCAAGGTGCCGCGTAGCCAGCTCGGAAATCCCGCCTACGACGTCCGG
AAAAATGGTCGGACCGCGGAGGGAGTCGACCGGGATATCGAGTACGTGAA
GGAGGGGGAAACTGGTACAGAACGTACCGTGCGCGGGCGTAAGCGTGGCG
TCGTCCCCCCTCGGGTGCCGAACCCGCTGAAGAAGCTGACCTTCGACCGC
CAGCTACAGATTCCGTTCGACATCCTTCACCTCGATGCTCTG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7535:3573..3914+

>mRNA_H-canaliculatus_M_contigs7535.1.1 ID=mRNA_H-canaliculatus_M_contigs7535.1.1|Name=mRNA_H-canaliculatus_M_contigs7535.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=342bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7535:3573..3914+ (Hapterophycus canaliculatus Oshoro7m male)
GTACGAGGAGGACTGGAAGTAGCAATTCTCGACTCTCCGGAGCAAAGCGA
CTGGATGAACGTGAAGCACACAAATGGGAGCACCGAACTGTCCTGCCAGC
GCTGCAAGGTGCCGCGTAGCCAGCTCGGAAATCCCGCCTACGACGTCCGG
AAAAATGGTCGGACCGCGGAGGGAGTCGACCGGGATATCGAGTACGTGAA
GGAGGGGGAAACTGGTACAGAACGTACCGTGCGCGGGCGTAAGCGTGGCG
TCGTCCCCCCTCGGGTGCCGAACCCGCTGAAGAAGCTGACCTTCGACCGC
CAGCTACAGATTCCGTTCGACATCCTTCACCTCGATGCTCTG
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