mRNA_H-canaliculatus_M_contigs75348.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75348.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75348.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs75348.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA62_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 7.100e-20
Identity = 43/62 (69.35%), Postives = 54/62 (87.10%), Query Frame = 1 
Query:   22 LNIRRQALRIGRKFEEFKKIMMFLGQNDVCGVRRVLGQALKDGKSPFAILGTLQSAFEGRFR 207
            LN++RQA RIGRK +E+KK+MMF G  D+ GVRRVL QALKDGKSP A+LGTL++AF+GR+R
Sbjct:    2 LNLKRQASRIGRKLQEYKKVMMFHGDIDIPGVRRVLAQALKDGKSPIAMLGTLEAAFQGRYR 63
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75348.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized7.100e-2069.35protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75348contigH-canaliculatus_M_contigs75348:238..495 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G3X4
Model size258
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000123
EggNOG OGs2DMFT@1|root,2S64X@2759|Eukaryota
Cds size258
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854090.6612663-CDS-H-canaliculatus_M_contigs75348:237..4951696854090.6612663-CDS-H-canaliculatus_M_contigs75348:237..495Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75348 238..495 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75348.1.1prot_H-canaliculatus_M_contigs75348.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75348 238..495 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75348.1.1

>prot_H-canaliculatus_M_contigs75348.1.1 ID=prot_H-canaliculatus_M_contigs75348.1.1|Name=mRNA_H-canaliculatus_M_contigs75348.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=86bp
EATRLKTLNIRRQALRIGRKFEEFKKIMMFLGQNDVCGVRRVLGQALKDG
KSPFAILGTLQSAFEGRFRTHEQAGKKYSGQRSPH*
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mRNA from alignment at H-canaliculatus_M_contigs75348:238..495-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75348.1.1 ID=mRNA_H-canaliculatus_M_contigs75348.1.1|Name=mRNA_H-canaliculatus_M_contigs75348.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=258bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75348:238..495- (Hapterophycus canaliculatus Oshoro7m male)
GAAGCTACCCGTTTGAAGACGTTGAACATTCGGAGGCAGGCGTTGCGGAT
CGGCAGGAAATTCGAGGAATTCAAGAAGATCATGATGTTCCTAGGCCAGA
ACGACGTCTGCGGTGTGCGGCGGGTCTTGGGGCAGGCGCTCAAGGATGGC
AAGTCGCCGTTCGCGATCTTGGGTACTCTCCAGTCCGCCTTCGAAGGCAG
ATTCCGTACGCATGAGCAAGCGGGGAAGAAGTATTCGGGCCAACGTTCGC
CACATTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75348:238..495-

>mRNA_H-canaliculatus_M_contigs75348.1.1 ID=mRNA_H-canaliculatus_M_contigs75348.1.1|Name=mRNA_H-canaliculatus_M_contigs75348.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=258bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75348:238..495- (Hapterophycus canaliculatus Oshoro7m male)
GAAGCTACCCGTTTGAAGACGTTGAACATTCGGAGGCAGGCGTTGCGGAT
CGGCAGGAAATTCGAGGAATTCAAGAAGATCATGATGTTCCTAGGCCAGA
ACGACGTCTGCGGTGTGCGGCGGGTCTTGGGGCAGGCGCTCAAGGATGGC
AAGTCGCCGTTCGCGATCTTGGGTACTCTCCAGTCCGCCTTCGAAGGCAG
ATTCCGTACGCATGAGCAAGCGGGGAAGAAGTATTCGGGCCAACGTTCGC
CACATTGA
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