mRNA_H-canaliculatus_M_contigs75338.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75338.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75338.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs75338.1.1 vs.
Match: Putative (rhamnosyl transferase n=1 Tax=Rhodobacteraceae bacterium HLUCCO18 TaxID=1666917 RepID=A0A0P7XD92_9RHOB)

HSP 1 Score: 55.1 bits (131), Expect = 1.800e-7
Identity = 25/52 (48.08%), Postives = 34/52 (65.38%), Query Frame = 1 
Query:    7 TQIKGLIRFSYPAEGGFKMNRQSEGNVADALFHPDRLRRRMELFRRFTLPSL 162
             QI G+ RFSYPA+ GF+++ +    + DAL+ P+RLRRR   F    LPSL
Sbjct:    7 NQIVGVCRFSYPAKAGFRLSAEGHDAIVDALYAPERLRRRFAYFEMICLPSL 58
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BLAST of mRNA_H-canaliculatus_M_contigs75338.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ruegeria sp. AD91A TaxID=2293862 RepID=A0A346SLC0_9RHOB)

HSP 1 Score: 54.7 bits (130), Expect = 2.340e-7
Identity = 27/50 (54.00%), Postives = 31/50 (62.00%), Query Frame = 1 
Query:   10 QIKGLIRFSYPAEGGFKMNRQSEGNVADALFHPDRLRRRMELFRRFTLPS 159
            Q+ GL RFSYPA GGF++NR +       LF PDRL  R  LF   TLPS
Sbjct:    2 QVIGLCRFSYPATGGFRLNRDTIEEQRQFLFAPDRLEERFHLFETITLPS 51
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BLAST of mRNA_H-canaliculatus_M_contigs75338.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Rhodobacter sp. SW2 TaxID=371731 RepID=C8S524_9RHOB)

HSP 1 Score: 54.3 bits (129), Expect = 3.280e-7
Identity = 26/52 (50.00%), Postives = 33/52 (63.46%), Query Frame = 1 
Query:    7 TQIKGLIRFSYPAEGGFKMNRQSEGNVADALFHPDRLRRRMELFRRFTLPSL 162
             QI GL+RFSYP+ GGF         +   L+ PDRL+RR +LF + TLPSL
Sbjct:    9 NQIIGLVRFSYPSNGGFTKTVADPAALEAQLYDPDRLQRRFDLFEKLTLPSL 60
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BLAST of mRNA_H-canaliculatus_M_contigs75338.1.1 vs.
Match: glycosyltransferase (n=1 Tax=Gemmobacter lanyuensis TaxID=1054497 RepID=UPI001678B5E1)

HSP 1 Score: 52.8 bits (125), Expect = 1.180e-6
Identity = 27/53 (50.94%), Postives = 34/53 (64.15%), Query Frame = 1 
Query:    7 TQIKGLIRFSYPAEGGFKMNRQSEGNVADA-LFHPDRLRRRMELFRRFTLPSL 162
             QI G++RFSYP+EGGF    Q E    +A L+ PDRL RR  +F +  LPSL
Sbjct:    7 NQIIGMMRFSYPSEGGFLKGGQGEDPAFEARLYAPDRLERRFRMFEKLALPSL 59
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BLAST of mRNA_H-canaliculatus_M_contigs75338.1.1 vs.
Match: glycosyltransferase (n=1 Tax=Natronohydrobacter thiooxidans TaxID=87172 RepID=UPI0008FF6AA9)

HSP 1 Score: 52.0 bits (123), Expect = 2.220e-6
Identity = 27/54 (50.00%), Postives = 33/54 (61.11%), Query Frame = 1 
Query:    1 MLTQIKGLIRFSYPAEGGFKMNRQSEGNVADALFHPDRLRRRMELFRRFTLPSL 162
            M  Q+  +IRFSY AEGGF+++R         L+ PDRL RR  LF   TLPSL
Sbjct:    1 MRMQVIIVIRFSYVAEGGFRLSRDGLDAARATLYAPDRLERRFRLFEALTLPSL 54
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BLAST of mRNA_H-canaliculatus_M_contigs75338.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ascidiaceihabitans donghaensis TaxID=1510460 RepID=A0A2R8BHC1_9RHOB)

HSP 1 Score: 49.7 bits (117), Expect = 1.520e-5
Identity = 24/50 (48.00%), Postives = 31/50 (62.00%), Query Frame = 1 
Query:   13 IKGLIRFSYPAEGGFKMNRQSEGNVADALFHPDRLRRRMELFRRFTLPSL 162
            +KGL+RFSYPA+GGF ++ +    V   L+  DRL RR   F    LPSL
Sbjct:    9 VKGLVRFSYPAQGGFALSDKGLDVVEATLYDTDRLERRFAYFETLALPSL 58
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BLAST of mRNA_H-canaliculatus_M_contigs75338.1.1 vs.
Match: Uncharacterized (protein n=9 Tax=Ruegeria TaxID=97050 RepID=A0A5P9GJQ8_9RHOB)

HSP 1 Score: 48.1 bits (113), Expect = 5.400e-5
Identity = 24/50 (48.00%), Postives = 29/50 (58.00%), Query Frame = 1 
Query:   10 QIKGLIRFSYPAEGGFKMNRQSEGNVADALFHPDRLRRRMELFRRFTLPS 159
            Q+ GL RFSYPA GGF++NR +       L+  DRL  R  LF   TLP 
Sbjct:    2 QVIGLCRFSYPATGGFRLNRDTIEEQRQFLYALDRLEERFRLFEAITLPG 51
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75338.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
Putative1.800e-748.08rhamnosyl transferase n=1 Tax=Rhodobacteraceae bac... [more]
Uncharacterized2.340e-754.00protein n=1 Tax=Ruegeria sp. AD91A TaxID=2293862 R... [more]
Uncharacterized3.280e-750.00protein n=2 Tax=Rhodobacter sp. SW2 TaxID=371731 R... [more]
glycosyltransferase1.180e-650.94n=1 Tax=Gemmobacter lanyuensis TaxID=1054497 RepID... [more]
glycosyltransferase2.220e-650.00n=1 Tax=Natronohydrobacter thiooxidans TaxID=87172... [more]
Uncharacterized1.520e-548.00protein n=1 Tax=Ascidiaceihabitans donghaensis Tax... [more]
Uncharacterized5.400e-548.00protein n=9 Tax=Ruegeria TaxID=97050 RepID=A0A5P9G... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75338contigH-canaliculatus_M_contigs75338:2..163 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1300350.DSW25_15960
PFAMsRhamno_transf
Model size162
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue2.08e-08
EggNOG OGs28I2R@1|root,2Z8UP@2|Bacteria,1R4MS@1224|Proteobacteria,2TVNT@28211|Alphaproteobacteria,3ZW82@60136|Sulfitobacter
DescriptionPutative rhamnosyl transferase
Cds size162
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854090.5763977-CDS-H-canaliculatus_M_contigs75338:1..1631696854090.5763977-CDS-H-canaliculatus_M_contigs75338:1..163Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75338 2..163 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75338.1.1prot_H-canaliculatus_M_contigs75338.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75338 2..163 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75338.1.1

>prot_H-canaliculatus_M_contigs75338.1.1 ID=prot_H-canaliculatus_M_contigs75338.1.1|Name=mRNA_H-canaliculatus_M_contigs75338.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=54bp
MLTQIKGLIRFSYPAEGGFKMNRQSEGNVADALFHPDRLRRRMELFRRFT
LPSL
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mRNA from alignment at H-canaliculatus_M_contigs75338:2..163-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75338.1.1 ID=mRNA_H-canaliculatus_M_contigs75338.1.1|Name=mRNA_H-canaliculatus_M_contigs75338.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=162bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75338:2..163- (Hapterophycus canaliculatus Oshoro7m male)
ATGCTTACTCAGATCAAAGGGCTAATCCGGTTCTCGTATCCCGCTGAGGG
TGGTTTTAAAATGAACCGGCAATCCGAAGGGAATGTTGCAGACGCGCTGT
TTCATCCTGACCGGTTGCGTCGCCGGATGGAATTGTTTCGCCGCTTTACC
CTGCCATCTTTG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75338:2..163-

>mRNA_H-canaliculatus_M_contigs75338.1.1 ID=mRNA_H-canaliculatus_M_contigs75338.1.1|Name=mRNA_H-canaliculatus_M_contigs75338.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=162bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75338:2..163- (Hapterophycus canaliculatus Oshoro7m male)
ATGCTTACTCAGATCAAAGGGCTAATCCGGTTCTCGTATCCCGCTGAGGG
TGGTTTTAAAATGAACCGGCAATCCGAAGGGAATGTTGCAGACGCGCTGT
TTCATCCTGACCGGTTGCGTCGCCGGATGGAATTGTTTCGCCGCTTTACC
CTGCCATCTTTG
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