mRNA_H-canaliculatus_M_contigs75324.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75324.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75324.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs75324.1.1 vs.
Match: Rieske ((2Fe-2S) protein n=1 Tax=Roseobacter sp. H9 TaxID=2763262 RepID=UPI001D0AA554)

HSP 1 Score: 191 bits (484), Expect = 1.170e-59
Identity = 83/118 (70.34%), Postives = 89/118 (75.42%), Query Frame = 1
Query:    1 MDWVAVGLCDDVPARTVVPRRVENTDLAIWCSTAGVFHAWGDRCPHRGMRLSHGFVRRETLSCIYHGWTYDDAGACVSIPSHPDLTPPNSICAARYECRVQGGAIWVALQPTEAVVPD 354
            MDW+AVGL  DVPA TVVPRRV +TD+AIWCS AG  HAWGDRCPHRGMRLSHGFVR ETLSCIYHGW Y   G C  IP+HP L PP +ICA  Y C  Q   IWVAL PT+A  PD
Sbjct:    1 MDWIAVGLSVDVPAGTVVPRRVNDTDMAIWCSAAGKLHAWGDRCPHRGMRLSHGFVRGETLSCIYHGWQYGMDGTCSYIPAHPQLEPPKTICARSYACNEQDQMIWVALAPTQAKTPD 118          
BLAST of mRNA_H-canaliculatus_M_contigs75324.1.1 vs.
Match: Rieske (domain-containing protein n=1 Tax=Marivita cryptomonadis TaxID=505252 RepID=A0A1X4P0L1_9RHOB)

HSP 1 Score: 181 bits (459), Expect = 7.360e-56
Identity = 73/119 (61.34%), Postives = 92/119 (77.31%), Query Frame = 1
Query:    1 MDWVAVGLCDDVPARTVVPRRVENTDLAIWCSTAGVFHAWGDRCPHRGMRLSHGFVRRETLSCIYHGWTYDDAGACVSIPSHPDLTPPNSICAARYECRVQGGAIWVALQPTEAVVPDL 357
            M+WVAV L +DVP   V+P R+E+TDLAIWC+ +G +HAW DRCPHRGMRLSHGFVR +TL+CIYHGW Y++ GAC  IP+HP LTPP++IC   Y C   GG IWV+L  T++ +P L
Sbjct:    1 MNWVAVALTEDVPPGVVIPSRIEDTDLAIWCTPSGRYHAWSDRCPHRGMRLSHGFVRGDTLACIYHGWQYNEEGACDYIPAHPKLTPPDTICVPTYTCTEAGGVIWVSLNKTDSALPAL 119          
BLAST of mRNA_H-canaliculatus_M_contigs75324.1.1 vs.
Match: Rieske ((2Fe-2S) protein n=1 Tax=Marivita geojedonensis TaxID=1123756 RepID=UPI000A1D5E4E)

HSP 1 Score: 177 bits (448), Expect = 3.450e-54
Identity = 70/119 (58.82%), Postives = 91/119 (76.47%), Query Frame = 1
Query:    1 MDWVAVGLCDDVPARTVVPRRVENTDLAIWCSTAGVFHAWGDRCPHRGMRLSHGFVRRETLSCIYHGWTYDDAGACVSIPSHPDLTPPNSICAARYECRVQGGAIWVALQPTEAVVPDL 357
            M W+AVGL  DVP   V+P R+ +T+LA+WC+ +G +HAW DRCPHRGMRLSHGFVR  TL+CIYHGW Y++AG+C  IP+HP LTPP++IC   Y C   GG IWV+L+ T+  +P+L
Sbjct:    1 MSWIAVGLKKDVPPGIVIPSRLADTELAVWCAPSGSYHAWSDRCPHRGMRLSHGFVRGNTLACIYHGWQYNEAGSCDYIPAHPKLTPPDTICVPTYSCTEAGGVIWVSLEATDQPLPEL 119          
BLAST of mRNA_H-canaliculatus_M_contigs75324.1.1 vs.
Match: Oxidoreductase (n=1 Tax=Marivita sp. XM-24bin2 TaxID=2133951 RepID=A0A316KST1_9RHOB)

HSP 1 Score: 176 bits (445), Expect = 9.850e-54
Identity = 70/119 (58.82%), Postives = 90/119 (75.63%), Query Frame = 1
Query:    1 MDWVAVGLCDDVPARTVVPRRVENTDLAIWCSTAGVFHAWGDRCPHRGMRLSHGFVRRETLSCIYHGWTYDDAGACVSIPSHPDLTPPNSICAARYECRVQGGAIWVALQPTEAVVPDL 357
            M+W+AVGL  DVP   V+P R+E+T++AIWC+ +G +HAW DRCPHRGMRLSHGFVR ETL+CIYHGW Y+  G+C  IP+HP LTPP++IC   Y C  +GG IWV+L   +  +P L
Sbjct:    1 MNWIAVGLAKDVPPGVVIPSRIEDTEMAIWCTPSGRYHAWSDRCPHRGMRLSHGFVRGETLACIYHGWQYNQTGSCDYIPAHPKLTPPDTICVPTYTCVEEGGVIWVSLNSVDDPLPVL 119          
BLAST of mRNA_H-canaliculatus_M_contigs75324.1.1 vs.
Match: Oxidoreductase (n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A3B9BPB4_9RHOB)

HSP 1 Score: 176 bits (445), Expect = 1.180e-53
Identity = 74/119 (62.18%), Postives = 88/119 (73.95%), Query Frame = 1
Query:    1 MDWVAVGLCDDVPARTVVPRRVENTDLAIWCSTAGVFHAWGDRCPHRGMRLSHGFVRRETLSCIYHGWTYDDAGACVSIPSHPDLTPPNSICAARYECRVQGGAIWVALQPTEAVVPDL 357
            ++W+AVGL +D+P  TVVPRRV+  DLAIW S  G FHAW DRCPHRGMRLSHGFVR E L+C+YHGW Y+  GAC  IP+HPDLTPP +ICA  Y C  +  A+WVAL      VPD+
Sbjct:    9 LNWIAVGLAEDIPVGTVVPRRVDGLDLAIWRSGLGRFHAWDDRCPHRGMRLSHGFVRGEVLACVYHGWQYNLDGACDYIPAHPDLTPPKTICANTYVCETRNQALWVALGTVNGDVPDI 127          
BLAST of mRNA_H-canaliculatus_M_contigs75324.1.1 vs.
Match: Rieske (domain-containing protein n=1 Tax=Salipiger pallidus TaxID=1775170 RepID=A0A8J2ZP90_9RHOB)

HSP 1 Score: 150 bits (378), Expect = 1.660e-43
Identity = 64/118 (54.24%), Postives = 75/118 (63.56%), Query Frame = 1
Query:    4 DWVAVGLCDDVPARTVVPRRVENTDLAIWCSTAGVFHAWGDRCPHRGMRLSHGFVRRETLSCIYHGWTYDDAGACVSIPSHPDLTPPNSICAARYECRVQGGAIWVALQPTEAVVPDL 357
            DW  V L  D+P  +  P R+ +T LAIW S +G   AW DRCPHRGMRLSHG+VR E LSCIYHGW+Y + G C  IP+HPDLTPP SI    + CR   G +WVA        PDL
Sbjct:    4 DWTPVALSHDIPVASAAPGRIGDTALAIWRSASGRIAAWSDRCPHRGMRLSHGYVRGERLSCIYHGWSYGEDGGCKRIPAHPDLTPPESIRVPVFACREASGVVWVAEGQPAGAPPDL 121          
BLAST of mRNA_H-canaliculatus_M_contigs75324.1.1 vs.
Match: Rieske (2Fe-2S domain-containing protein n=1 Tax=Cypionkella psychrotolerans TaxID=1678131 RepID=UPI0006B43E3C)

HSP 1 Score: 149 bits (377), Expect = 2.220e-43
Identity = 68/117 (58.12%), Postives = 76/117 (64.96%), Query Frame = 1
Query:    7 WVAVGLCDDVPARTVVPRRVENTDLAIWCSTAGVFHAWGDRCPHRGMRLSHGFVRRETLSCIYHGWTYDDAGACVSIPSHPDLTPPNSICAARYECRVQGGAIWVALQPTEAVVPDL 357
            WVA GL  D+P   V+    +  +LAIW S  G   AW DRCPHRGMRLSHGFVR ETLSCIYHGWTY   GAC  IP+HP + PP +I A  Y C    G IWVA   TE V+PDL
Sbjct:    5 WVANGLSQDLPLGVVMAGSWQGAELAIWRSATGRLSAWNDRCPHRGMRLSHGFVRGETLSCIYHGWTYGTDGACSKIPAHPAMVPPAAIKAEVYACVEADGVIWVAPAGTEVVLPDL 121          
BLAST of mRNA_H-canaliculatus_M_contigs75324.1.1 vs.
Match: Oxidoreductase (n=2 Tax=Rhodobacterales TaxID=204455 RepID=A0A3D6CSX1_9RHOB)

HSP 1 Score: 147 bits (372), Expect = 1.310e-42
Identity = 62/117 (52.99%), Postives = 77/117 (65.81%), Query Frame = 1
Query:    4 DWVAVGLCDDVPARTVVPRRVENTDLAIWCSTAGVFHAWGDRCPHRGMRLSHGFVRRETLSCIYHGWTYDDAGACVSIPSHPDLTPPNSICAARYECRVQGGAIWVALQPTEAVVPD 354
            +WVAVGL  D+PA   +P   +  +LA+W S +G   AW DRCPHRGMRLSHGFVR ETL+CIYHGW Y  +G+C+ IP+HPDL PP +I A  + C   GG IWV         P+
Sbjct:    4 EWVAVGLSRDLPAGVAMPALWQGRELAVWRSASGKLSAWNDRCPHRGMRLSHGFVRGETLACIYHGWVYGTSGSCIHIPAHPDLVPPATIKAETFLCVEAGGVIWVGAAGATDTPPE 120          
BLAST of mRNA_H-canaliculatus_M_contigs75324.1.1 vs.
Match: Oxidoreductase (n=1 Tax=Pseudorhodobacter sp. PARRP1 TaxID=2015560 RepID=A0A257GIJ5_9RHOB)

HSP 1 Score: 147 bits (371), Expect = 1.750e-42
Identity = 65/117 (55.56%), Postives = 75/117 (64.10%), Query Frame = 1
Query:    7 WVAVGLCDDVPARTVVPRRVENTDLAIWCSTAGVFHAWGDRCPHRGMRLSHGFVRRETLSCIYHGWTYDDAGACVSIPSHPDLTPPNSICAARYECRVQGGAIWVALQPTEAVVPDL 357
            W+A GL  D+P   V+       +LAIW S +G   AWGDRCPHRGMRLSHGFVR ETLSCIYHGW Y   G C  IP+HP + PP +I A  Y+C   GG IWVA    E+  PDL
Sbjct:    4 WIANGLSQDLPPGVVMAGAWRGAELAIWRSASGRLSAWGDRCPHRGMRLSHGFVRGETLSCIYHGWVYGSDGGCRKIPAHPAMVPPATIKAEVYQCVEAGGVIWVAPAAVESDAPDL 120          
BLAST of mRNA_H-canaliculatus_M_contigs75324.1.1 vs.
Match: Rieske ((2Fe-2S) domain protein n=1 Tax=Paracoccus aminophilus JCM 7686 TaxID=1367847 RepID=S5XS58_PARAH)

HSP 1 Score: 146 bits (368), Expect = 5.590e-42
Identity = 63/115 (54.78%), Postives = 73/115 (63.48%), Query Frame = 1
Query:    7 WVAVGLCDDVPARTVVPRRVENTDLAIWCSTAGVFHAWGDRCPHRGMRLSHGFVRRETLSCIYHGWTYDDAGACVSIPSHPDLTPPNSICAARYECRVQGGAIWVALQPTEAVVP 351
            W  + L  D+P R V+P   +  DLA+W + +G   AW DRCPHRGMRLSHGFVR E LSCIYHGW YD AG C  IP+HPDL PP +I    + C  Q G IWVA Q  E   P
Sbjct:    6 WTPIALASDLPPRLVIPVSCDGQDLALWRAESGKVQAWNDRCPHRGMRLSHGFVRGEFLSCIYHGWRYDGAGICRKIPAHPDLEPPATIRVNAWSCVEQDGVIWVAPQGAEGEPP 120          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75324.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Rieske1.170e-5970.34(2Fe-2S) protein n=1 Tax=Roseobacter sp. H9 TaxID=... [more]
Rieske7.360e-5661.34domain-containing protein n=1 Tax=Marivita cryptom... [more]
Rieske3.450e-5458.82(2Fe-2S) protein n=1 Tax=Marivita geojedonensis Ta... [more]
Oxidoreductase9.850e-5458.82n=1 Tax=Marivita sp. XM-24bin2 TaxID=2133951 RepID... [more]
Oxidoreductase1.180e-5362.18n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 R... [more]
Rieske1.660e-4354.24domain-containing protein n=1 Tax=Salipiger pallid... [more]
Rieske2.220e-4358.122Fe-2S domain-containing protein n=1 Tax=Cypionkel... [more]
Oxidoreductase1.310e-4252.99n=2 Tax=Rhodobacterales TaxID=204455 RepID=A0A3D6C... [more]
Oxidoreductase1.750e-4255.56n=1 Tax=Pseudorhodobacter sp. PARRP1 TaxID=2015560... [more]
Rieske5.590e-4254.78(2Fe-2S) domain protein n=1 Tax=Paracoccus aminoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75324contigH-canaliculatus_M_contigs75324:185..541 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1367847.JCM7686_3254
PFAMsRieske
Model size357
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.16e-43
EggNOG OGsCOG4638@1|root,COG4638@2|Bacteria,1R9PX@1224|Proteobacteria,2U4KE@28211|Alphaproteobacteria
DescriptionCOG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit
Cds size357
COG categoryP
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854090.5410469-CDS-H-canaliculatus_M_contigs75324:184..5411696854090.5410469-CDS-H-canaliculatus_M_contigs75324:184..541Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75324 185..541 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75324.1.1prot_H-canaliculatus_M_contigs75324.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75324 185..541 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75324.1.1

>prot_H-canaliculatus_M_contigs75324.1.1 ID=prot_H-canaliculatus_M_contigs75324.1.1|Name=mRNA_H-canaliculatus_M_contigs75324.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=119bp
MDWVAVGLCDDVPARTVVPRRVENTDLAIWCSTAGVFHAWGDRCPHRGMR
LSHGFVRRETLSCIYHGWTYDDAGACVSIPSHPDLTPPNSICAARYECRV
QGGAIWVALQPTEAVVPDL
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mRNA from alignment at H-canaliculatus_M_contigs75324:185..541+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75324.1.1 ID=mRNA_H-canaliculatus_M_contigs75324.1.1|Name=mRNA_H-canaliculatus_M_contigs75324.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=357bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75324:185..541+ (Hapterophycus canaliculatus Oshoro7m male)
ATGGACTGGGTTGCTGTTGGTTTATGTGATGACGTGCCCGCGCGCACAGT TGTGCCTCGGCGTGTTGAGAACACGGATCTTGCAATCTGGTGCAGCACTG CGGGTGTTTTCCATGCTTGGGGCGATCGTTGCCCGCACCGTGGCATGCGC CTTTCACACGGGTTTGTGCGCAGAGAAACCTTGTCGTGCATTTACCATGG GTGGACATATGACGACGCGGGGGCTTGCGTTTCGATCCCATCACATCCCG ATCTGACCCCGCCCAACAGCATCTGTGCTGCGCGGTATGAGTGTCGTGTT CAGGGCGGGGCGATTTGGGTTGCGTTGCAGCCAACCGAGGCCGTTGTGCC CGATCTT
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75324:185..541+

>mRNA_H-canaliculatus_M_contigs75324.1.1 ID=mRNA_H-canaliculatus_M_contigs75324.1.1|Name=mRNA_H-canaliculatus_M_contigs75324.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=357bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75324:185..541+ (Hapterophycus canaliculatus Oshoro7m male)
ATGGACTGGGTTGCTGTTGGTTTATGTGATGACGTGCCCGCGCGCACAGT
TGTGCCTCGGCGTGTTGAGAACACGGATCTTGCAATCTGGTGCAGCACTG
CGGGTGTTTTCCATGCTTGGGGCGATCGTTGCCCGCACCGTGGCATGCGC
CTTTCACACGGGTTTGTGCGCAGAGAAACCTTGTCGTGCATTTACCATGG
GTGGACATATGACGACGCGGGGGCTTGCGTTTCGATCCCATCACATCCCG
ATCTGACCCCGCCCAACAGCATCTGTGCTGCGCGGTATGAGTGTCGTGTT
CAGGGCGGGGCGATTTGGGTTGCGTTGCAGCCAACCGAGGCCGTTGTGCC
CGATCTT
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