mRNA_H-canaliculatus_M_contigs75324.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
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Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs75324.1.1 vs.
Match: Rieske ((2Fe-2S) protein n=1 Tax=Roseobacter sp. H9 TaxID=2763262 RepID=UPI001D0AA554) HSP 1 Score: 191 bits (484), Expect = 1.170e-59 Identity = 83/118 (70.34%), Postives = 89/118 (75.42%), Query Frame = 1
Query: 1 MDWVAVGLCDDVPARTVVPRRVENTDLAIWCSTAGVFHAWGDRCPHRGMRLSHGFVRRETLSCIYHGWTYDDAGACVSIPSHPDLTPPNSICAARYECRVQGGAIWVALQPTEAVVPD 354
MDW+AVGL DVPA TVVPRRV +TD+AIWCS AG HAWGDRCPHRGMRLSHGFVR ETLSCIYHGW Y G C IP+HP L PP +ICA Y C Q IWVAL PT+A PD
Sbjct: 1 MDWIAVGLSVDVPAGTVVPRRVNDTDMAIWCSAAGKLHAWGDRCPHRGMRLSHGFVRGETLSCIYHGWQYGMDGTCSYIPAHPQLEPPKTICARSYACNEQDQMIWVALAPTQAKTPD 118
BLAST of mRNA_H-canaliculatus_M_contigs75324.1.1 vs.
Match: Rieske (domain-containing protein n=1 Tax=Marivita cryptomonadis TaxID=505252 RepID=A0A1X4P0L1_9RHOB) HSP 1 Score: 181 bits (459), Expect = 7.360e-56 Identity = 73/119 (61.34%), Postives = 92/119 (77.31%), Query Frame = 1
Query: 1 MDWVAVGLCDDVPARTVVPRRVENTDLAIWCSTAGVFHAWGDRCPHRGMRLSHGFVRRETLSCIYHGWTYDDAGACVSIPSHPDLTPPNSICAARYECRVQGGAIWVALQPTEAVVPDL 357
M+WVAV L +DVP V+P R+E+TDLAIWC+ +G +HAW DRCPHRGMRLSHGFVR +TL+CIYHGW Y++ GAC IP+HP LTPP++IC Y C GG IWV+L T++ +P L
Sbjct: 1 MNWVAVALTEDVPPGVVIPSRIEDTDLAIWCTPSGRYHAWSDRCPHRGMRLSHGFVRGDTLACIYHGWQYNEEGACDYIPAHPKLTPPDTICVPTYTCTEAGGVIWVSLNKTDSALPAL 119
BLAST of mRNA_H-canaliculatus_M_contigs75324.1.1 vs.
Match: Rieske ((2Fe-2S) protein n=1 Tax=Marivita geojedonensis TaxID=1123756 RepID=UPI000A1D5E4E) HSP 1 Score: 177 bits (448), Expect = 3.450e-54 Identity = 70/119 (58.82%), Postives = 91/119 (76.47%), Query Frame = 1
Query: 1 MDWVAVGLCDDVPARTVVPRRVENTDLAIWCSTAGVFHAWGDRCPHRGMRLSHGFVRRETLSCIYHGWTYDDAGACVSIPSHPDLTPPNSICAARYECRVQGGAIWVALQPTEAVVPDL 357
M W+AVGL DVP V+P R+ +T+LA+WC+ +G +HAW DRCPHRGMRLSHGFVR TL+CIYHGW Y++AG+C IP+HP LTPP++IC Y C GG IWV+L+ T+ +P+L
Sbjct: 1 MSWIAVGLKKDVPPGIVIPSRLADTELAVWCAPSGSYHAWSDRCPHRGMRLSHGFVRGNTLACIYHGWQYNEAGSCDYIPAHPKLTPPDTICVPTYSCTEAGGVIWVSLEATDQPLPEL 119
BLAST of mRNA_H-canaliculatus_M_contigs75324.1.1 vs.
Match: Oxidoreductase (n=1 Tax=Marivita sp. XM-24bin2 TaxID=2133951 RepID=A0A316KST1_9RHOB) HSP 1 Score: 176 bits (445), Expect = 9.850e-54 Identity = 70/119 (58.82%), Postives = 90/119 (75.63%), Query Frame = 1
Query: 1 MDWVAVGLCDDVPARTVVPRRVENTDLAIWCSTAGVFHAWGDRCPHRGMRLSHGFVRRETLSCIYHGWTYDDAGACVSIPSHPDLTPPNSICAARYECRVQGGAIWVALQPTEAVVPDL 357
M+W+AVGL DVP V+P R+E+T++AIWC+ +G +HAW DRCPHRGMRLSHGFVR ETL+CIYHGW Y+ G+C IP+HP LTPP++IC Y C +GG IWV+L + +P L
Sbjct: 1 MNWIAVGLAKDVPPGVVIPSRIEDTEMAIWCTPSGRYHAWSDRCPHRGMRLSHGFVRGETLACIYHGWQYNQTGSCDYIPAHPKLTPPDTICVPTYTCVEEGGVIWVSLNSVDDPLPVL 119
BLAST of mRNA_H-canaliculatus_M_contigs75324.1.1 vs.
Match: Oxidoreductase (n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A3B9BPB4_9RHOB) HSP 1 Score: 176 bits (445), Expect = 1.180e-53 Identity = 74/119 (62.18%), Postives = 88/119 (73.95%), Query Frame = 1
Query: 1 MDWVAVGLCDDVPARTVVPRRVENTDLAIWCSTAGVFHAWGDRCPHRGMRLSHGFVRRETLSCIYHGWTYDDAGACVSIPSHPDLTPPNSICAARYECRVQGGAIWVALQPTEAVVPDL 357
++W+AVGL +D+P TVVPRRV+ DLAIW S G FHAW DRCPHRGMRLSHGFVR E L+C+YHGW Y+ GAC IP+HPDLTPP +ICA Y C + A+WVAL VPD+
Sbjct: 9 LNWIAVGLAEDIPVGTVVPRRVDGLDLAIWRSGLGRFHAWDDRCPHRGMRLSHGFVRGEVLACVYHGWQYNLDGACDYIPAHPDLTPPKTICANTYVCETRNQALWVALGTVNGDVPDI 127
BLAST of mRNA_H-canaliculatus_M_contigs75324.1.1 vs.
Match: Rieske (domain-containing protein n=1 Tax=Salipiger pallidus TaxID=1775170 RepID=A0A8J2ZP90_9RHOB) HSP 1 Score: 150 bits (378), Expect = 1.660e-43 Identity = 64/118 (54.24%), Postives = 75/118 (63.56%), Query Frame = 1
Query: 4 DWVAVGLCDDVPARTVVPRRVENTDLAIWCSTAGVFHAWGDRCPHRGMRLSHGFVRRETLSCIYHGWTYDDAGACVSIPSHPDLTPPNSICAARYECRVQGGAIWVALQPTEAVVPDL 357
DW V L D+P + P R+ +T LAIW S +G AW DRCPHRGMRLSHG+VR E LSCIYHGW+Y + G C IP+HPDLTPP SI + CR G +WVA PDL
Sbjct: 4 DWTPVALSHDIPVASAAPGRIGDTALAIWRSASGRIAAWSDRCPHRGMRLSHGYVRGERLSCIYHGWSYGEDGGCKRIPAHPDLTPPESIRVPVFACREASGVVWVAEGQPAGAPPDL 121
BLAST of mRNA_H-canaliculatus_M_contigs75324.1.1 vs.
Match: Rieske (2Fe-2S domain-containing protein n=1 Tax=Cypionkella psychrotolerans TaxID=1678131 RepID=UPI0006B43E3C) HSP 1 Score: 149 bits (377), Expect = 2.220e-43 Identity = 68/117 (58.12%), Postives = 76/117 (64.96%), Query Frame = 1
Query: 7 WVAVGLCDDVPARTVVPRRVENTDLAIWCSTAGVFHAWGDRCPHRGMRLSHGFVRRETLSCIYHGWTYDDAGACVSIPSHPDLTPPNSICAARYECRVQGGAIWVALQPTEAVVPDL 357
WVA GL D+P V+ + +LAIW S G AW DRCPHRGMRLSHGFVR ETLSCIYHGWTY GAC IP+HP + PP +I A Y C G IWVA TE V+PDL
Sbjct: 5 WVANGLSQDLPLGVVMAGSWQGAELAIWRSATGRLSAWNDRCPHRGMRLSHGFVRGETLSCIYHGWTYGTDGACSKIPAHPAMVPPAAIKAEVYACVEADGVIWVAPAGTEVVLPDL 121
BLAST of mRNA_H-canaliculatus_M_contigs75324.1.1 vs.
Match: Oxidoreductase (n=2 Tax=Rhodobacterales TaxID=204455 RepID=A0A3D6CSX1_9RHOB) HSP 1 Score: 147 bits (372), Expect = 1.310e-42 Identity = 62/117 (52.99%), Postives = 77/117 (65.81%), Query Frame = 1
Query: 4 DWVAVGLCDDVPARTVVPRRVENTDLAIWCSTAGVFHAWGDRCPHRGMRLSHGFVRRETLSCIYHGWTYDDAGACVSIPSHPDLTPPNSICAARYECRVQGGAIWVALQPTEAVVPD 354
+WVAVGL D+PA +P + +LA+W S +G AW DRCPHRGMRLSHGFVR ETL+CIYHGW Y +G+C+ IP+HPDL PP +I A + C GG IWV P+
Sbjct: 4 EWVAVGLSRDLPAGVAMPALWQGRELAVWRSASGKLSAWNDRCPHRGMRLSHGFVRGETLACIYHGWVYGTSGSCIHIPAHPDLVPPATIKAETFLCVEAGGVIWVGAAGATDTPPE 120
BLAST of mRNA_H-canaliculatus_M_contigs75324.1.1 vs.
Match: Oxidoreductase (n=1 Tax=Pseudorhodobacter sp. PARRP1 TaxID=2015560 RepID=A0A257GIJ5_9RHOB) HSP 1 Score: 147 bits (371), Expect = 1.750e-42 Identity = 65/117 (55.56%), Postives = 75/117 (64.10%), Query Frame = 1
Query: 7 WVAVGLCDDVPARTVVPRRVENTDLAIWCSTAGVFHAWGDRCPHRGMRLSHGFVRRETLSCIYHGWTYDDAGACVSIPSHPDLTPPNSICAARYECRVQGGAIWVALQPTEAVVPDL 357
W+A GL D+P V+ +LAIW S +G AWGDRCPHRGMRLSHGFVR ETLSCIYHGW Y G C IP+HP + PP +I A Y+C GG IWVA E+ PDL
Sbjct: 4 WIANGLSQDLPPGVVMAGAWRGAELAIWRSASGRLSAWGDRCPHRGMRLSHGFVRGETLSCIYHGWVYGSDGGCRKIPAHPAMVPPATIKAEVYQCVEAGGVIWVAPAAVESDAPDL 120
BLAST of mRNA_H-canaliculatus_M_contigs75324.1.1 vs.
Match: Rieske ((2Fe-2S) domain protein n=1 Tax=Paracoccus aminophilus JCM 7686 TaxID=1367847 RepID=S5XS58_PARAH) HSP 1 Score: 146 bits (368), Expect = 5.590e-42 Identity = 63/115 (54.78%), Postives = 73/115 (63.48%), Query Frame = 1
Query: 7 WVAVGLCDDVPARTVVPRRVENTDLAIWCSTAGVFHAWGDRCPHRGMRLSHGFVRRETLSCIYHGWTYDDAGACVSIPSHPDLTPPNSICAARYECRVQGGAIWVALQPTEAVVP 351
W + L D+P R V+P + DLA+W + +G AW DRCPHRGMRLSHGFVR E LSCIYHGW YD AG C IP+HPDL PP +I + C Q G IWVA Q E P
Sbjct: 6 WTPIALASDLPPRLVIPVSCDGQDLALWRAESGKVQAWNDRCPHRGMRLSHGFVRGEFLSCIYHGWRYDGAGICRKIPAHPDLEPPATIRVNAWSCVEQDGVIWVAPQGAEGEPP 120 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75324.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs75324.1.1 >prot_H-canaliculatus_M_contigs75324.1.1 ID=prot_H-canaliculatus_M_contigs75324.1.1|Name=mRNA_H-canaliculatus_M_contigs75324.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=119bp MDWVAVGLCDDVPARTVVPRRVENTDLAIWCSTAGVFHAWGDRCPHRGMRback to top mRNA from alignment at H-canaliculatus_M_contigs75324:185..541+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs75324.1.1 ID=mRNA_H-canaliculatus_M_contigs75324.1.1|Name=mRNA_H-canaliculatus_M_contigs75324.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=357bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75324:185..541+ (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75324:185..541+ >mRNA_H-canaliculatus_M_contigs75324.1.1 ID=mRNA_H-canaliculatus_M_contigs75324.1.1|Name=mRNA_H-canaliculatus_M_contigs75324.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=357bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75324:185..541+ (Hapterophycus canaliculatus Oshoro7m male)back to top |