mRNA_H-canaliculatus_M_contigs753.1.2 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs753.1.2
Unique NamemRNA_H-canaliculatus_M_contigs753.1.2
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs753.1.2 vs.
Match: Hypothetical (protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C6A9_9STRA)

HSP 1 Score: 172 bits (437), Expect = 3.540e-49
Identity = 84/139 (60.43%), Postives = 103/139 (74.10%), Query Frame = 1
Query:    1 FGAVKTFDLKEGGGEIAVTSDNRREYVDLYVKWLLVGSVNGQYKPFESRGFHKVVGGKALSLFRPEELELLICGNPKLDFSALEENSEYQDGYSRDNAVVKNFWEVVHDFGEDSKRKLLKFATGSDRAPIQGLGSSALV 417
            +G V+T DL EGGG IAVT+DN  EY+  YV+W L+GSV  QY+ FE +GF +V GG A+ LF  EELELL+CGNP LDF ALE+ + Y DG+  D+ ++K+FWEVVH F E+ KR LLKFATGSDRAPI GL S   V
Sbjct:  288 WGNVETHDLVEGGGSIAVTNDNVHEYISKYVEWTLMGSVQKQYEAFE-KGFMRVCGGAAIELFTAEELELLVCGNPTLDFEALEKVTHYDDGFEEDSPMIKHFWEVVHAFTEEEKRLLLKFATGSDRAPINGLSSLTFV 425          
BLAST of mRNA_H-canaliculatus_M_contigs753.1.2 vs.
Match: HECT (domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0G687_9EUKA)

HSP 1 Score: 164 bits (414), Expect = 1.270e-48
Identity = 79/139 (56.83%), Postives = 101/139 (72.66%), Query Frame = 1
Query:    1 FGAVKTFDLKEGGGEIAVTSDNRREYVDLYVKWLLVGSVNGQYKPFESRGFHKVVGGKALSLFRPEELELLICGNPKLDFSALEENSEYQDGYSRDNAVVKNFWEVVHDFGEDSKRKLLKFATGSDRAPIQGLGSSALV 417
            +G  K  DLK  GG+I VT+DNR+E+V LYV WLL  SV  Q++ F SRGFH++ GGK L L  PEELELLICG+P+LDF+AL+EN+ Y DGY+RD  V++ FW +V  F ED K++LL F TGSDR PI GL +   +
Sbjct:   19 YGTTKPIDLKPNGGDIPVTNDNRKEFVALYVDWLLNKSVAKQFESF-SRGFHRMCGGKTLDLCIPEELELLICGSPELDFTALQENAMYDDGYTRDCVVIQWFWLLVEGFDEDKKKQLLNFVTGSDRVPINGLANMTFI 156          
BLAST of mRNA_H-canaliculatus_M_contigs753.1.2 vs.
Match: Hypothetical (protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4P7K0_GUITH)

HSP 1 Score: 170 bits (431), Expect = 1.230e-46
Identity = 84/139 (60.43%), Postives = 105/139 (75.54%), Query Frame = 1
Query:    1 FGAVKTFDLKEGGGEIAVTSDNRREYVDLYVKWLLVGSVNGQYKPFESRGFHKVVGGKALSLFRPEELELLICGNPKLDFSALEENSEYQDGYSRDNAVVKNFWEVVHDFGEDSKRKLLKFATGSDRAPIQGLGSSALV 417
            FG +KT +LK GG EI+VT++NR+EYVDLYVK+LL  S+  Q+  F + GFH+V GG AL +F PEELELLICGNP LDF ALEE +  +DGY+RD+ V+ NFW VVH    + K+KLL F TGSDR+PI+GLGS   V
Sbjct:  630 FGVMKTHELKPGGEEISVTNENRKEYVDLYVKYLLEESIAQQFSAF-AEGFHEVCGGPALRMFIPEELELLICGNPTLDFHALEEVTSTEDGYTRDHPVILNFWTVVHSMTIEEKKKLLFFCTGSDRSPIKGLGSMTFV 767          
BLAST of mRNA_H-canaliculatus_M_contigs753.1.2 vs.
Match: Hypothetical (protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0E301_9CRYP)

HSP 1 Score: 157 bits (398), Expect = 1.410e-46
Identity = 78/128 (60.94%), Postives = 96/128 (75.00%), Query Frame = 1
Query:   34 GGGEIAVTSDNRREYVDLYVKWLLVGSVNGQYKPFESRGFHKVVGGKALSLFRPEELELLICGNPKLDFSALEENSEYQDGYSRDNAVVKNFWEVVHDFGEDSKRKLLKFATGSDRAPIQGLGSSALV 417
            GG EI VT+ NR+EYVDLYVK+LL  S++ Q+  F + GFH+V GG AL +F PEELELLICGNP LDF ALEE +  +DGY+RD+ V+ NFW VVH    + K+KLL F TGSDR+PI+GLGS   V
Sbjct:    1 GGDEIPVTNHNRKEYVDLYVKYLLEESISQQFSAF-AEGFHEVCGGPALRMFIPEELELLICGNPNLDFHALEEVTSTEDGYTRDHPVILNFWTVVHSMTIEEKKKLLFFCTGSDRSPIKGLGSMTFV 127          
BLAST of mRNA_H-canaliculatus_M_contigs753.1.2 vs.
Match: Hypothetical (protein n=4 Tax=Hemiselmis TaxID=77924 RepID=A0A7S1DUF8_HEMAN)

HSP 1 Score: 159 bits (401), Expect = 2.370e-45
Identity = 76/139 (54.68%), Postives = 99/139 (71.22%), Query Frame = 1
Query:    1 FGAVKTFDLKEGGGEIAVTSDNRREYVDLYVKWLLVGSVNGQYKPFESRGFHKVVGGKALSLFRPEELELLICGNPKLDFSALEENSEYQDGYSRDNAVVKNFWEVVHDFGEDSKRKLLKFATGSDRAPIQGLGSSALV 417
            +G +KT +L  GG    VT  NR EYV+LYVKWLL  S+  Q+  F   GFH+V GG AL +F PEELELLICG+P LDF ALEE +  +DG++RD+ +++ FWE+VH+   + K+KLL F TGSDR+PI+GLGS   V
Sbjct:  128 YGTMKTIELCPGGANRNVTEVNREEYVELYVKWLLEDSIQAQFSAF-CEGFHEVCGGAALRMFIPEELELLICGSPSLDFLALEEVTSTEDGFTRDHPLIRAFWEIVHEMSLEDKKKLLFFCTGSDRSPIKGLGSMTFV 265          
BLAST of mRNA_H-canaliculatus_M_contigs753.1.2 vs.
Match: Hypothetical (protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S0T1_9STRA)

HSP 1 Score: 166 bits (421), Expect = 3.260e-45
Identity = 80/139 (57.55%), Postives = 101/139 (72.66%), Query Frame = 1
Query:    1 FGAVKTFDLKEGGGEIAVTSDNRREYVDLYVKWLLVGSVNGQYKPFESRGFHKVVGGKALSLFRPEELELLICGNPKLDFSALEENSEYQDGYSRDNAVVKNFWEVVHDFGEDSKRKLLKFATGSDRAPIQGLGSSALV 417
            +G ++ +DLK  GG+I VT DN +EYVDLYV W L  SV  QY  FE +GF +V GG+AL++F+PEELELL+CGNP LDF ALE  ++Y DG++ ++A +  FW VVH   E+ KR LLKFATGSDRAPI GL S   V
Sbjct:  658 WGGIQMYDLKPNGGDIPVTRDNVQEYVDLYVDWALSTSVEKQYSAFE-KGFLRVCGGEALNIFQPEELELLVCGNPVLDFEALERVTQYDDGFTAESATITRFWSVVHRLDEEEKRLLLKFATGSDRAPINGLASLTFV 795          
BLAST of mRNA_H-canaliculatus_M_contigs753.1.2 vs.
Match: Hypothetical (protein n=2 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M4Q2_9CRYP)

HSP 1 Score: 158 bits (400), Expect = 3.690e-45
Identity = 78/139 (56.12%), Postives = 101/139 (72.66%), Query Frame = 1
Query:    1 FGAVKTFDLKEGGGEIAVTSDNRREYVDLYVKWLLVGSVNGQYKPFESRGFHKVVGGKALSLFRPEELELLICGNPKLDFSALEENSEYQDGYSRDNAVVKNFWEVVHDFGEDSKRKLLKFATGSDRAPIQGLGSSALV 417
            FG +++  LK GG    VT++NR EYV LYV WLL GSV  Q+  F ++GFH+V GG AL +F PEELELLICG+P LDF ALEE +  +DGY+RD+ V++ FWE+VHD     +++LL F TGSDR+PI+GLGS   V
Sbjct:  132 FGRMRSHALKPGGESEVVTNENRAEYVRLYVDWLLQGSVEQQFGAF-AQGFHEVCGGPALRMFVPEELELLICGSPSLDFHALEEVTCTEDGYTRDHPVIRAFWEIVHDMSAADRKRLLFFCTGSDRSPIKGLGSLTFV 269          
BLAST of mRNA_H-canaliculatus_M_contigs753.1.2 vs.
Match: HECT (domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L435_9EUKA)

HSP 1 Score: 159 bits (403), Expect = 1.450e-44
Identity = 80/134 (59.70%), Postives = 98/134 (73.13%), Query Frame = 1
Query:    1 FGAVKTFDLKEGGGEIAVTSDNRREYVDLYVKWLLVGSVNGQYKPFESRGFHKVVGGKALSLFRPEELELLICGNPKLDFSALEENSEYQDGYSRDNAVVKNFWEVVHDFGEDSKRKLLKFATGSDRAPIQGLG 402
            FGA +T DLK  GG I VT +NR+EYVDLYVK+LL  S+  Q+  F+S GF  V  G+AL LF PEEL+LLICG+P LDF  LE+++ Y +GY+ D+ +VK FWEVVH   E  K+KLL FATGSDR PI GLG
Sbjct:  240 FGATETHDLKPNGGAIPVTLENRQEYVDLYVKYLLEESIYHQFDAFKS-GFMSVCDGRALKLFEPEELQLLICGSPVLDFYELEKSTHYDNGYTEDSHIVKIFWEVVHSLSETEKKKLLFFATGSDRCPIGGLG 372          
BLAST of mRNA_H-canaliculatus_M_contigs753.1.2 vs.
Match: Hypothetical (protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RL22_9STRA)

HSP 1 Score: 163 bits (413), Expect = 2.790e-44
Identity = 80/138 (57.97%), Postives = 102/138 (73.91%), Query Frame = 1
Query:    1 FGAVKTFDLKEGGGEIAVTSDNRREYVDLYVKWLLVGSVNGQYKPFESRGFHKVVGGKALSLFRPEELELLICGNPKLDFSALEENSEYQDGYSRDNAVVKNFWEVVHDFGEDSKRKLLKFATGSDRAPIQGLGSSAL 414
            FG VKT DLKEGGG+IAVT+DNR EYV+LYV +    S+   Y+PF  +GFH V GG  L +F PEELELL+CG+ KLDF ALEEN +Y+ G+S D++ + +FW+VVH+  ED K+K L F TGSDR PI+GL +  L
Sbjct:  566 FGEVKTVDLKEGGGDIAVTNDNREEYVNLYVDYHFNKSIEHIYRPFH-KGFHMVCGGTFLEMFHPEELELLLCGSSKLDFGALEENCQYE-GFSADSSTIVDFWKVVHELPEDLKKKFLMFTTGSDRVPIRGLSALRL 701          
BLAST of mRNA_H-canaliculatus_M_contigs753.1.2 vs.
Match: (large (yellow croaker) hypothetical protein n=1 Tax=Larimichthys crocea TaxID=215358 RepID=UPI001C35ADB9)

HSP 1 Score: 152 bits (385), Expect = 6.100e-44
Identity = 73/140 (52.14%), Postives = 101/140 (72.14%), Query Frame = 1
Query:    1 FGAVKTFDLKEGGGEIAVTSDNRREYVDLYVKWLLVGSVNGQYKPFESRGFHKVVGGKALS-LFRPEELELLICGNPKLDFSALEENSEYQDGYSRDNAVVKNFWEVVHDFGEDSKRKLLKFATGSDRAPIQGLGSSALV 417
            FG+   +DLKE G +I VT +NR+E+VDLY +++L  SV  Q+K F+ +GF  V     L  LFRPEE+ELLICG+ KLDF ALE+ +EY  GYS+D+ ++K+FWE +H FGE+ KR  L+F TG+DRAP+ GLG   ++
Sbjct:   13 FGSPVLYDLKEQGDQIPVTKENRQEFVDLYTEYILNKSVERQFKAFK-KGFLMVTNESPLKYLFRPEEVELLICGSRKLDFEALEKTTEYDGGYSKDSQIIKDFWETIHSFGEEQKRLFLQFTTGTDRAPVGGLGKLKMI 151          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs753.1.2 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Hypothetical3.540e-4960.43protein n=1 Tax=Florenciella parvula TaxID=236787 ... [more]
HECT1.270e-4856.83domain-containing protein n=1 Tax=Sphaeroforma arc... [more]
Hypothetical1.230e-4660.43protein n=1 Tax=Guillardia theta TaxID=55529 RepID... [more]
Hypothetical1.410e-4660.94protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S... [more]
Hypothetical2.370e-4554.68protein n=4 Tax=Hemiselmis TaxID=77924 RepID=A0A7S... [more]
Hypothetical3.260e-4557.55protein n=2 Tax=Rhizochromulina marina TaxID=10348... [more]
Hypothetical3.690e-4556.12protein n=2 Tax=Cryptomonas curvata TaxID=233186 R... [more]
HECT1.450e-4459.70domain-containing protein n=1 Tax=Arcella intermed... [more]
Hypothetical2.790e-4457.97protein n=1 Tax=labyrinthulid quahog parasite QPX ... [more]
(large6.100e-4452.14yellow croaker) hypothetical protein n=1 Tax=Larim... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs753contigH-canaliculatus_M_contigs753:2969..4872 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog72019.SARC_04028T0
PFAMsAZUL,HECT
Model size417
Max annot lvl2759|Eukaryota
KEGG koko:K10587
KEGG Pathwayko04120,ko05165,ko05203,map04120,map05165,map05203
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.09e-49
EggNOG OGsCOG5021@1|root,KOG0941@2759|Eukaryota,38BET@33154|Opisthokonta
EC2.3.2.26
Descriptionubiquitin--protein ligase
Cds size417
COG categoryO
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854090.4658906-CDS-H-canaliculatus_M_contigs753:2968..30701696854090.4658906-CDS-H-canaliculatus_M_contigs753:2968..3070Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs753 2969..3070 -
1696854090.483763-CDS-H-canaliculatus_M_contigs753:3913..40851696854090.483763-CDS-H-canaliculatus_M_contigs753:3913..4085Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs753 3914..4085 -
1696854090.4989295-CDS-H-canaliculatus_M_contigs753:4729..48721696854090.4989295-CDS-H-canaliculatus_M_contigs753:4729..4872Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs753 4730..4872 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs753.1.2prot_H-canaliculatus_M_contigs753.1.2Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs753 2969..4872 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs753.1.2

>prot_H-canaliculatus_M_contigs753.1.2 ID=prot_H-canaliculatus_M_contigs753.1.2|Name=mRNA_H-canaliculatus_M_contigs753.1.2|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=139bp
FGAVKTFDLKEGGGEIAVTSDNRREYVDLYVKWLLVGSVNGQYKPFESRG
FHKVVGGKALSLFRPEELELLICGNPKLDFSALEENSEYQDGYSRDNAVV
KNFWEVVHDFGEDSKRKLLKFATGSDRAPIQGLGSSALV
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mRNA from alignment at H-canaliculatus_M_contigs753:2969..4872-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs753.1.2 ID=mRNA_H-canaliculatus_M_contigs753.1.2|Name=mRNA_H-canaliculatus_M_contigs753.1.2|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1904bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs753:2969..4872- (Hapterophycus canaliculatus Oshoro7m male)
TTCGGAGCGGTGAAAACGTTCGACCTCAAGGAAGGGGGAGGAGAGATCGC CGTTACCAGCGACAATCGACGAGAGTACGTCGACCTGTACGTCAAGTGGC TGCTGGTCGGATCGGTCAACGGCCAGTACAAGCCGTTCGAAAGGTGTGTG TATTACAGCTCTCCATCGAGGAGGTATGAACGACACGCTCGAGGACCCTT TGGGTGTGCCCTTTGAAACAAGAAAAGGAGCAATAGAGGAGAGACAAGTT GAAAATATGTGCTTGGGAGCAAGAAGAGTTGACAAACGCAAGCAGGTACT ACGTTGTGGGCGGGAAGGCCGCGACAGGCCTCTACCGCTCACGTAAAACG AAAAAATGTGCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC TGTTTCGTTGAAAACGACACACGCCTCTCGCATGCGCGCATTTGTCCCAG ACTTTATGCGAGCGAACCGTTCTGCTCGAGATAGCCTTCCCACGAGGCCA ACGCACCCCCTACTGCGTTTCTTCACCCTCGGGCACGAACGCACCAAGAT ACGAACGCCCGGGGCCCCTAGGACGTCCACGCGTCAATTTGTCTTGTCTT GGCCCAAGGCCAATGAGGATCATGCCCGAACGCCGGAGTCTTCGTTTGAG CGTCCCTTTGCCACGAGGTGGCACCCCCTCCCGACGAAGCTCCAAACTCC CTTCCTCCCCTGTCCACCCTTTACCCCCTACCCCCCCAAACACGCCTCCG GCACACGCGGCTCGGGGCGGCTGATTATAACCTCGAGTAGAGGTTTCCAC AAGGTGGTGGGCGGAAAGGCCCTGAGCCTGTTCCGGCCAGAGGAGCTGGA GTTGCTCATCTGCGGAAACCCGAAGCTGGACTTCTCGGCGCTGGAGGAAA ACTCCGAGTACCAGGACGGTTACAGTCGAGACAACGCCGTCGTGAAGAAC TTTTGGGAGGTGGGGACGAAGCGGGGCGAGTAAACGAGGCCGCGTGCGAT CGTTTTTTTTCATATCTTGAAGTGCCGATGAAGCAAAAGAGTTTCTCCCT TCGCAGCATCGTTCTTTAGATCTAGGCGATGACCTTAGGGCCTACTGCCT TTTTTGCCAACGACGTTTCCATGGGGGACCGAAGAAGAAAGCAATCAACA CACACTGCACTGAGTTGCAGAACTTTTTCTGTTCAATTTTTTGTCCCAAC CACACACAAAGAACCCTCGTTGTTTTCGGAACTCAGAAGGAACCTCGAGC TACGTCTAGCAGGACGTCCCTTTCTTTAAAATGTGTTGTGTGGGGGGAGG GCTATCCCTGCCACCGACGGCACCTCGGCATAGACCAAAAGGGTTGGTCT GCTGTTCGCTACGCGGCAGAATTGCCGGTGCGTTGACAGTTCCACCCCCA AAGCGATTCGCCACCCCACGCCCACCTCAACGGCGCTTACCCATGCAACA CCTGTACAAGTACAAGGGTCTTCGTGGTTTGCGCTGGGGATGGGTGGAAA AGCCCAACTGGGCCGAAATTTGCTCTCGATTGACGACCTCGGCGTTTGCC CCCCTGGTCTCGTGGGGAAGCGCACGCATGCCGTGGAGCCGAAGTGGTGG CGTGACGAAGCTTGTCGCCGTCTGCTCCTGATTCTTCTGGTTCTCGTGCA GCCGAGATCGCCGTCGATGCTCCGGGCGGTGGTCACAAAGCGCGCTGGGC TAGGTCCGCAGACACGCACATGATCAGTGGTGAAGTAAAGGGCACACGGA AGACCTAACAAGGTGTTGTGCGTCCCCGGAAACGAATGGTTGGTCTTTTC AGGTGGTGCACGACTTCGGGGAGGATTCGAAGCGAAAGCTGCTCAAGTTC GCCACGGGCAGCGACCGCGCTCCGATACAAGGCCTAGGCTCGAGCGCGCT GGTG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs753:2969..4872-

>mRNA_H-canaliculatus_M_contigs753.1.2 ID=mRNA_H-canaliculatus_M_contigs753.1.2|Name=mRNA_H-canaliculatus_M_contigs753.1.2|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=417bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs753:2969..4872- (Hapterophycus canaliculatus Oshoro7m male)
TTCGGAGCGGTGAAAACGTTCGACCTCAAGGAAGGGGGAGGAGAGATCGC
CGTTACCAGCGACAATCGACGAGAGTACGTCGACCTGTACGTCAAGTGGC
TGCTGGTCGGATCGGTCAACGGCCAGTACAAGCCGTTCGAAAGTAGAGGT
TTCCACAAGGTGGTGGGCGGAAAGGCCCTGAGCCTGTTCCGGCCAGAGGA
GCTGGAGTTGCTCATCTGCGGAAACCCGAAGCTGGACTTCTCGGCGCTGG
AGGAAAACTCCGAGTACCAGGACGGTTACAGTCGAGACAACGCCGTCGTG
AAGAACTTTTGGGAGGTGGTGCACGACTTCGGGGAGGATTCGAAGCGAAA
GCTGCTCAAGTTCGCCACGGGCAGCGACCGCGCTCCGATACAAGGCCTAG
GCTCGAGCGCGCTGGTG
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