mRNA_H-canaliculatus_M_contigs75298.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75298.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75298.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs75298.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX98_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 1.340e-11
Identity = 28/38 (73.68%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    1 QVKRRINVVPVKESRDLTMTWPMPPIQKYFRSKPDRWV 114
            QVKRRI+VVPVKESRD+TM+WP+PPI+++FRSKPD ++
Sbjct:  263 QVKRRIHVVPVKESRDVTMSWPLPPIEQHFRSKPDSYL 300
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BLAST of mRNA_H-canaliculatus_M_contigs75298.1.1 vs.
Match: insulin-degrading (enzyme-like n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI00201F0787)

HSP 1 Score: 47.4 bits (111), Expect = 6.110e-5
Identity = 19/38 (50.00%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:    1 QVKRRINVVPVKESRDLTMTWPMPPIQKYFRSKPDRWV 114
            Q++R+I VVPVK+ R LT+TWP+P + +Y+ SKP  ++
Sbjct:  261 QLQRKICVVPVKDVRSLTVTWPIPDVSQYYHSKPASYL 298
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75298.1.1 vs.
Match: insulin-degrading (enzyme-like n=2 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EB0688F)

HSP 1 Score: 47.4 bits (111), Expect = 6.130e-5
Identity = 19/38 (50.00%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:    1 QVKRRINVVPVKESRDLTMTWPMPPIQKYFRSKPDRWV 114
            Q++R+I VVPVK+ R LT+TWP+P + +Y+ SKP  ++
Sbjct:  261 QLQRKICVVPVKDVRSLTVTWPIPDVSQYYHSKPASYL 298
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75298.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized1.340e-1173.68protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX98... [more]
insulin-degrading6.110e-550.00enzyme-like n=1 Tax=Haliotis rufescens TaxID=6454 ... [more]
insulin-degrading6.130e-550.00enzyme-like n=2 Tax=Haliotis rufescens TaxID=6454 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75298contigH-canaliculatus_M_contigs75298:146..268 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FX98
PFAMsPeptidase_M16,Peptidase_M16_C,Peptidase_M16_M
Model size123
Max annot lvl2759|Eukaryota
KEGG koko:K01408
KEGG Pathwayko05010,map05010
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue2.19e-12
EggNOG OGsCOG1025@1|root,KOG0959@2759|Eukaryota
EC3.4.24.56
Descriptionmetalloendopeptidase activity
Cds size123
COG categoryO
BRITEko00000,ko00001,ko01000,ko01002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854090.435748-CDS-H-canaliculatus_M_contigs75298:145..2681696854090.435748-CDS-H-canaliculatus_M_contigs75298:145..268Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75298 146..268 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75298.1.1prot_H-canaliculatus_M_contigs75298.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75298 146..268 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75298.1.1

>prot_H-canaliculatus_M_contigs75298.1.1 ID=prot_H-canaliculatus_M_contigs75298.1.1|Name=mRNA_H-canaliculatus_M_contigs75298.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=41bp
QVKRRINVVPVKESRDLTMTWPMPPIQKYFRSKPDRWVEA*
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mRNA from alignment at H-canaliculatus_M_contigs75298:146..268+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75298.1.1 ID=mRNA_H-canaliculatus_M_contigs75298.1.1|Name=mRNA_H-canaliculatus_M_contigs75298.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=123bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75298:146..268+ (Hapterophycus canaliculatus Oshoro7m male)
CAGGTGAAGCGTCGCATCAACGTGGTTCCGGTGAAGGAATCGAGGGACCT
CACCATGACCTGGCCCATGCCGCCCATCCAGAAGTACTTCCGCTCCAAGC
CGGACAGGTGGGTCGAGGCGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75298:146..268+

>mRNA_H-canaliculatus_M_contigs75298.1.1 ID=mRNA_H-canaliculatus_M_contigs75298.1.1|Name=mRNA_H-canaliculatus_M_contigs75298.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=123bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75298:146..268+ (Hapterophycus canaliculatus Oshoro7m male)
CAGGTGAAGCGTCGCATCAACGTGGTTCCGGTGAAGGAATCGAGGGACCT
CACCATGACCTGGCCCATGCCGCCCATCCAGAAGTACTTCCGCTCCAAGC
CGGACAGGTGGGTCGAGGCGTGA
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