mRNA_H-canaliculatus_M_contigs7529.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
|
Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7529.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ03_ECTSI) HSP 1 Score: 159 bits (401), Expect = 3.580e-47 Identity = 82/115 (71.30%), Postives = 94/115 (81.74%), Query Frame = 1
Query: 1 DWQFLVDSVNERHLVRLGATGERDYPRGSCSVHFEAPRVSVEGIKPCTLANTGLLIATLMRRRATTATILAEGKDQEEAKAKEGGEEEVAQVNLVVQVADVGQGKLHRVIYSPLE 345
D +FLVDSVNERHLVRLGAT ERDYPRGSCS+HFE PRVSVEGIKPCTLANTGLL+A+LMRR A ++++ + + G + VAQVNLVVQVADVGQG+L RVIYSPLE
Sbjct: 82 DVKFLVDSVNERHLVRLGATSERDYPRGSCSMHFEVPRVSVEGIKPCTLANTGLLVASLMRRGGENGEPPASAEEKKSGR-EPGADAVVAQVNLVVQVADVGQGRLMRVIYSPLE 195
BLAST of mRNA_H-canaliculatus_M_contigs7529.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA11_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 5.160e-19 Identity = 49/113 (43.36%), Postives = 63/113 (55.75%), Query Frame = 1
Query: 7 QFLVDSVNERHLVRLGATGERDYPRGSCSVHFEAPRVSVEGIKPCTLANTGLLIATLMRRRATTATILAEGKDQEEAKAKEGGEEEVAQVNLVVQVADVGQGKLHRVIYSPLE 345
+F+VDSVN RH++ LG T + G VHF P + V G+KPCTLAN GL++A+L R+ GG +V VN+VVQV GQ +L R IYSPLE
Sbjct: 69 KFVVDSVNARHVIELGNTEPENLSAGPSRVHFSVPSIDVTGVKPCTLANMGLMVASLTGRQG-------------------GGRVDVVDVNMVVQVEKRGQ-ELVRCIYSPLE 161
BLAST of mRNA_H-canaliculatus_M_contigs7529.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FNN5_9STRA) HSP 1 Score: 72.0 bits (175), Expect = 1.240e-13 Identity = 42/113 (37.17%), Postives = 59/113 (52.21%), Query Frame = 1
Query: 7 QFLVDSVNERHLVRLGATGERDYPRGSCSVHFEAPRVSVEGIKPCTLANTGLLIATLMRRRATTATILAEGKDQEEAKAKEGGEEEVAQVNLVVQVADVGQGKLHRVIYSPLE 345
Q+LVDSV ERH+++LG T +DY +G F P+++V IKP LAN GLLIA+ R ++ + +VVQV+ G L R+IY+PLE
Sbjct: 57 QYLVDSVLERHIIKLGKTDAQDYLQGENHFQFSVPQINVASIKPSNLANCGLLIASFKTRA-----------------------NDIMDLKMVVQVSKQGD-TLQRIIYNPLE 145
BLAST of mRNA_H-canaliculatus_M_contigs7529.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U3B2_9STRA) HSP 1 Score: 68.6 bits (166), Expect = 3.120e-12 Identity = 40/113 (35.40%), Postives = 57/113 (50.44%), Query Frame = 1
Query: 7 QFLVDSVNERHLVRLGATGERDYPRGSCSVHFEAPRVSVEGIKPCTLANTGLLIATLMRRRATTATILAEGKDQEEAKAKEGGEEEVAQVNLVVQVADVGQGKLHRVIYSPLE 345
Q+LVDSV ERH+++LG +DY G F P+++V IKP LAN GLL A+ R + ++ + +VVQV+ G L R+IY+PLE
Sbjct: 57 QYLVDSVLERHIIKLGKVEPQDYLEGENHFQFSVPQINVASIKPSNLANCGLLTASFKTRTS-----------------------DIMDLKMVVQVSKQGDS-LQRIIYNPLE 145
BLAST of mRNA_H-canaliculatus_M_contigs7529.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WWS7_9STRA) HSP 1 Score: 67.8 bits (164), Expect = 5.440e-12 Identity = 41/113 (36.28%), Postives = 60/113 (53.10%), Query Frame = 1
Query: 7 QFLVDSVNERHLVRLGATGERDYPRGSCSVHFEAPRVSVEGIKPCTLANTGLLIATLMRRRATTATILAEGKDQEEAKAKEGGEEEVAQVNLVVQVADVGQGKLHRVIYSPLE 345
++LVDSV +RH+++LG +DY RG F P+++V+ IKP LAN GLLIA+ K EG ++ + +VVQV+ G R+IY+PLE
Sbjct: 57 EYLVDSVLQRHIIKLGKVEVQDYKRGENHFQFSVPQINVDPIKPSNLANCGLLIASF--------------------KNDEG---DIMDLKMVVQVSKQGDS-YQRIIYNPLE 145
BLAST of mRNA_H-canaliculatus_M_contigs7529.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CI95_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 6.380e-11 Identity = 28/57 (49.12%), Postives = 41/57 (71.93%), Query Frame = 1
Query: 7 QFLVDSVNERHLVRLGATGERDYPRGSCSVHFEAPRVSVEGIKPCTLANTGLLIATL 177
+++VDSV +R ++ LGAT DY G+ S+ F P +++ GIKP +LAN GLLIA+L
Sbjct: 65 KYMVDSVGKRKIIMLGATEPEDYAAGANSMSFSVPEINISGIKPSSLANAGLLIASL 121
BLAST of mRNA_H-canaliculatus_M_contigs7529.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DHJ7_CAFRO) HSP 1 Score: 57.8 bits (138), Expect = 4.870e-8 Identity = 37/121 (30.58%), Postives = 57/121 (47.11%), Query Frame = 1
Query: 10 FLVDSVNERHLVRLGATGERDYPRGSCSVHFEAPRVSVEGIKPCTLANTGLLIATLMRRRATTATILAEGKDQEEAKAKEGGEEEVAQVNLVVQVADVGQGK----------LHRVIYSPL 342
+++D+V RHL++LG T D +G+ S+ F A ++ G+K L G+L L R + A G+EE+A VN+VVQV + GK L R ++ PL
Sbjct: 52 YVIDTVRRRHLIQLGTTSVGDLAKGANSMEFSAKELNFAGVKASRLTTAGMLTCALRRAKGD---------------APADGDEELAAVNMVVQV-ETASGKPAGKSTEPAELVRTVFDPL 156
BLAST of mRNA_H-canaliculatus_M_contigs7529.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RZE3_9ARCH) HSP 1 Score: 55.8 bits (133), Expect = 3.860e-7 Identity = 42/113 (37.17%), Postives = 55/113 (48.67%), Query Frame = 1
Query: 7 QFLVDSVNERHLVRLGATGERDYPRGSCSVHFEAPRVSVEGIKPCTLANTGLLIATLMRRRATTATILAEGKDQEEAKAKEGGEEEVAQVNLVVQVADVGQGKLHRVIYSPLE 345
QFLVD+ R + LG T DY G + F + V+ I +L+N+GLL+A LM +G EEVA VNLVVQV + QG R I+SPL+
Sbjct: 94 QFLVDTARSRLIRILGETEVEDYVDGESEMQFFCAHIDVDDIAVSSLSNSGLLMARLM----------VDG-------------EEVASVNLVVQVT-LKQGVAMRQIFSPLD 182 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7529.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs7529.1.1 >prot_H-canaliculatus_M_contigs7529.1.1 ID=prot_H-canaliculatus_M_contigs7529.1.1|Name=mRNA_H-canaliculatus_M_contigs7529.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=116bp DWQFLVDSVNERHLVRLGATGERDYPRGSCSVHFEAPRVSVEGIKPCTLAback to top mRNA from alignment at H-canaliculatus_M_contigs7529:4572..5187- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs7529.1.1 ID=mRNA_H-canaliculatus_M_contigs7529.1.1|Name=mRNA_H-canaliculatus_M_contigs7529.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=616bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7529:4572..5187- (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7529:4572..5187- >mRNA_H-canaliculatus_M_contigs7529.1.1 ID=mRNA_H-canaliculatus_M_contigs7529.1.1|Name=mRNA_H-canaliculatus_M_contigs7529.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=348bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7529:4572..5187- (Hapterophycus canaliculatus Oshoro7m male)back to top |