mRNA_H-canaliculatus_M_contigs7529.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7529.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7529.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7529.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ03_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 3.580e-47
Identity = 82/115 (71.30%), Postives = 94/115 (81.74%), Query Frame = 1
Query:    1 DWQFLVDSVNERHLVRLGATGERDYPRGSCSVHFEAPRVSVEGIKPCTLANTGLLIATLMRRRATTATILAEGKDQEEAKAKEGGEEEVAQVNLVVQVADVGQGKLHRVIYSPLE 345
            D +FLVDSVNERHLVRLGAT ERDYPRGSCS+HFE PRVSVEGIKPCTLANTGLL+A+LMRR        A  ++++  + + G +  VAQVNLVVQVADVGQG+L RVIYSPLE
Sbjct:   82 DVKFLVDSVNERHLVRLGATSERDYPRGSCSMHFEVPRVSVEGIKPCTLANTGLLVASLMRRGGENGEPPASAEEKKSGR-EPGADAVVAQVNLVVQVADVGQGRLMRVIYSPLE 195          
BLAST of mRNA_H-canaliculatus_M_contigs7529.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA11_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 5.160e-19
Identity = 49/113 (43.36%), Postives = 63/113 (55.75%), Query Frame = 1
Query:    7 QFLVDSVNERHLVRLGATGERDYPRGSCSVHFEAPRVSVEGIKPCTLANTGLLIATLMRRRATTATILAEGKDQEEAKAKEGGEEEVAQVNLVVQVADVGQGKLHRVIYSPLE 345
            +F+VDSVN RH++ LG T   +   G   VHF  P + V G+KPCTLAN GL++A+L  R+                    GG  +V  VN+VVQV   GQ +L R IYSPLE
Sbjct:   69 KFVVDSVNARHVIELGNTEPENLSAGPSRVHFSVPSIDVTGVKPCTLANMGLMVASLTGRQG-------------------GGRVDVVDVNMVVQVEKRGQ-ELVRCIYSPLE 161          
BLAST of mRNA_H-canaliculatus_M_contigs7529.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FNN5_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.240e-13
Identity = 42/113 (37.17%), Postives = 59/113 (52.21%), Query Frame = 1
Query:    7 QFLVDSVNERHLVRLGATGERDYPRGSCSVHFEAPRVSVEGIKPCTLANTGLLIATLMRRRATTATILAEGKDQEEAKAKEGGEEEVAQVNLVVQVADVGQGKLHRVIYSPLE 345
            Q+LVDSV ERH+++LG T  +DY +G     F  P+++V  IKP  LAN GLLIA+   R                         ++  + +VVQV+  G   L R+IY+PLE
Sbjct:   57 QYLVDSVLERHIIKLGKTDAQDYLQGENHFQFSVPQINVASIKPSNLANCGLLIASFKTRA-----------------------NDIMDLKMVVQVSKQGD-TLQRIIYNPLE 145          
BLAST of mRNA_H-canaliculatus_M_contigs7529.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U3B2_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 3.120e-12
Identity = 40/113 (35.40%), Postives = 57/113 (50.44%), Query Frame = 1
Query:    7 QFLVDSVNERHLVRLGATGERDYPRGSCSVHFEAPRVSVEGIKPCTLANTGLLIATLMRRRATTATILAEGKDQEEAKAKEGGEEEVAQVNLVVQVADVGQGKLHRVIYSPLE 345
            Q+LVDSV ERH+++LG    +DY  G     F  P+++V  IKP  LAN GLL A+   R +                       ++  + +VVQV+  G   L R+IY+PLE
Sbjct:   57 QYLVDSVLERHIIKLGKVEPQDYLEGENHFQFSVPQINVASIKPSNLANCGLLTASFKTRTS-----------------------DIMDLKMVVQVSKQGDS-LQRIIYNPLE 145          
BLAST of mRNA_H-canaliculatus_M_contigs7529.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WWS7_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 5.440e-12
Identity = 41/113 (36.28%), Postives = 60/113 (53.10%), Query Frame = 1
Query:    7 QFLVDSVNERHLVRLGATGERDYPRGSCSVHFEAPRVSVEGIKPCTLANTGLLIATLMRRRATTATILAEGKDQEEAKAKEGGEEEVAQVNLVVQVADVGQGKLHRVIYSPLE 345
            ++LVDSV +RH+++LG    +DY RG     F  P+++V+ IKP  LAN GLLIA+                     K  EG   ++  + +VVQV+  G     R+IY+PLE
Sbjct:   57 EYLVDSVLQRHIIKLGKVEVQDYKRGENHFQFSVPQINVDPIKPSNLANCGLLIASF--------------------KNDEG---DIMDLKMVVQVSKQGDS-YQRIIYNPLE 145          
BLAST of mRNA_H-canaliculatus_M_contigs7529.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CI95_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 6.380e-11
Identity = 28/57 (49.12%), Postives = 41/57 (71.93%), Query Frame = 1
Query:    7 QFLVDSVNERHLVRLGATGERDYPRGSCSVHFEAPRVSVEGIKPCTLANTGLLIATL 177
            +++VDSV +R ++ LGAT   DY  G+ S+ F  P +++ GIKP +LAN GLLIA+L
Sbjct:   65 KYMVDSVGKRKIIMLGATEPEDYAAGANSMSFSVPEINISGIKPSSLANAGLLIASL 121          
BLAST of mRNA_H-canaliculatus_M_contigs7529.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DHJ7_CAFRO)

HSP 1 Score: 57.8 bits (138), Expect = 4.870e-8
Identity = 37/121 (30.58%), Postives = 57/121 (47.11%), Query Frame = 1
Query:   10 FLVDSVNERHLVRLGATGERDYPRGSCSVHFEAPRVSVEGIKPCTLANTGLLIATLMRRRATTATILAEGKDQEEAKAKEGGEEEVAQVNLVVQVADVGQGK----------LHRVIYSPL 342
            +++D+V  RHL++LG T   D  +G+ S+ F A  ++  G+K   L   G+L   L R +                 A   G+EE+A VN+VVQV +   GK          L R ++ PL
Sbjct:   52 YVIDTVRRRHLIQLGTTSVGDLAKGANSMEFSAKELNFAGVKASRLTTAGMLTCALRRAKGD---------------APADGDEELAAVNMVVQV-ETASGKPAGKSTEPAELVRTVFDPL 156          
BLAST of mRNA_H-canaliculatus_M_contigs7529.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RZE3_9ARCH)

HSP 1 Score: 55.8 bits (133), Expect = 3.860e-7
Identity = 42/113 (37.17%), Postives = 55/113 (48.67%), Query Frame = 1
Query:    7 QFLVDSVNERHLVRLGATGERDYPRGSCSVHFEAPRVSVEGIKPCTLANTGLLIATLMRRRATTATILAEGKDQEEAKAKEGGEEEVAQVNLVVQVADVGQGKLHRVIYSPLE 345
            QFLVD+   R +  LG T   DY  G   + F    + V+ I   +L+N+GLL+A LM           +G             EEVA VNLVVQV  + QG   R I+SPL+
Sbjct:   94 QFLVDTARSRLIRILGETEVEDYVDGESEMQFFCAHIDVDDIAVSSLSNSGLLMARLM----------VDG-------------EEVASVNLVVQVT-LKQGVAMRQIFSPLD 182          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7529.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
Uncharacterized3.580e-4771.30protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized5.160e-1943.36protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Uncharacterized1.240e-1337.17protein n=1 Tax=Aphanomyces astaci TaxID=112090 Re... [more]
Uncharacterized3.120e-1235.40protein n=1 Tax=Aphanomyces invadans TaxID=157072 ... [more]
Uncharacterized5.440e-1236.28protein n=1 Tax=Aphanomyces euteiches TaxID=100861... [more]
Hypothetical6.380e-1149.12protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014... [more]
Uncharacterized4.870e-830.58protein n=1 Tax=Cafeteria roenbergensis TaxID=3365... [more]
Uncharacterized3.860e-737.17protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A48... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7529contigH-canaliculatus_M_contigs7529:4572..5187 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LQ03
PFAMsASF1_hist_chap
Model size348
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.87e-48
EggNOG OGs2BP7F@1|root,2S1R9@2759|Eukaryota
Cds size348
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854090.384416-CDS-H-canaliculatus_M_contigs7529:4571..48141696854090.384416-CDS-H-canaliculatus_M_contigs7529:4571..4814Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7529 4572..4814 -
1696854090.3991766-CDS-H-canaliculatus_M_contigs7529:5082..51871696854090.3991766-CDS-H-canaliculatus_M_contigs7529:5082..5187Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7529 5083..5187 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7529.1.1prot_H-canaliculatus_M_contigs7529.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7529 4572..5187 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7529.1.1

>prot_H-canaliculatus_M_contigs7529.1.1 ID=prot_H-canaliculatus_M_contigs7529.1.1|Name=mRNA_H-canaliculatus_M_contigs7529.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=116bp
DWQFLVDSVNERHLVRLGATGERDYPRGSCSVHFEAPRVSVEGIKPCTLA
NTGLLIATLMRRRATTATILAEGKDQEEAKAKEGGEEEVAQVNLVVQVAD
VGQGKLHRVIYSPLE*
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mRNA from alignment at H-canaliculatus_M_contigs7529:4572..5187-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7529.1.1 ID=mRNA_H-canaliculatus_M_contigs7529.1.1|Name=mRNA_H-canaliculatus_M_contigs7529.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=616bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7529:4572..5187- (Hapterophycus canaliculatus Oshoro7m male)
GATTGGCAGTTTCTGGTGGACTCTGTCAACGAGCGACATCTCGTGCGACT CGGGGCTACAGGCGAGAGGGACTATCCGCGGGGCAGCTGCTCTGTGCACT TCGAGGTGACTCTTCTTGACTGGCTGTTCTCGTGGCTCGTTCATTTTTTT CGTATTTCCTTTCCAACTGTGTTTGGATCGAAAGGGGGTATGTAGTGGCG TGCGTGTGTTGCAGGCGCGTGTTTTCCCTGCGGTGGCTTCCCCCAAGCCA GCCCCTTGCACGTGTTTGGCTTCGCCAGCAGCTTGTCCTCCCTGTCACTC GACCAGTTCCTTGTTTCACTTCCTCATCTCCCCGCCCCCTCCTTCATCCA ATCGCCCTTTCTACCGCGCGAAGGCCCCAAGGGTATCAGTGGAAGGCATC AAGCCCTGCACTCTCGCCAACACTGGGCTCCTTATTGCGACCCTGATGCG GAGAAGGGCTACCACCGCAACCATACTCGCCGAGGGGAAGGACCAGGAGG AGGCGAAAGCCAAGGAGGGGGGGGAGGAGGAGGTAGCTCAGGTCAATCTG GTGGTCCAGGTGGCCGATGTGGGGCAGGGGAAACTCCATCGCGTGATATA CAGCCCGCTGGAGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7529:4572..5187-

>mRNA_H-canaliculatus_M_contigs7529.1.1 ID=mRNA_H-canaliculatus_M_contigs7529.1.1|Name=mRNA_H-canaliculatus_M_contigs7529.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=348bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7529:4572..5187- (Hapterophycus canaliculatus Oshoro7m male)
GATTGGCAGTTTCTGGTGGACTCTGTCAACGAGCGACATCTCGTGCGACT
CGGGGCTACAGGCGAGAGGGACTATCCGCGGGGCAGCTGCTCTGTGCACT
TCGAGGCCCCAAGGGTATCAGTGGAAGGCATCAAGCCCTGCACTCTCGCC
AACACTGGGCTCCTTATTGCGACCCTGATGCGGAGAAGGGCTACCACCGC
AACCATACTCGCCGAGGGGAAGGACCAGGAGGAGGCGAAAGCCAAGGAGG
GGGGGGAGGAGGAGGTAGCTCAGGTCAATCTGGTGGTCCAGGTGGCCGAT
GTGGGGCAGGGGAAACTCCATCGCGTGATATACAGCCCGCTGGAGTGA
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