mRNA_H-canaliculatus_M_contigs75281.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
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Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs75281.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXJ4_ECTSI) HSP 1 Score: 96.3 bits (238), Expect = 9.050e-25 Identity = 42/64 (65.62%), Postives = 52/64 (81.25%), Query Frame = 1
Query: 1 VRLNKGMWTREEHEAFLRGVRLFKRGEWEAMATLVPTRTVVQIRSHSQKYFREIDRGELFPKEV 192
+R NKG WT EEH AFLRGVR FKR W +ATL+PTRTV+QIR+H+QKY+ ++D+GE FP EV
Sbjct: 8 IRRNKGRWTSEEHHAFLRGVRRFKRNNWVGIATLLPTRTVLQIRTHAQKYYAKVDKGEPFPDEV 71
BLAST of mRNA_H-canaliculatus_M_contigs75281.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L149_9PHAE) HSP 1 Score: 95.5 bits (236), Expect = 2.290e-21 Identity = 43/69 (62.32%), Postives = 55/69 (79.71%), Query Frame = 1
Query: 1 VRLNKGMWTREEHEAFLRGVRLFKRGEWEAMATLVPTRTVVQIRSHSQKYFREIDRGELFPKEVH-SMH 204
+R NKG WT EEH+AFLRGVR FKR W +ATL+PTRTV+QIR+H+QKY+ ++D+GE FP E + S H
Sbjct: 3 IRRNKGRWTSEEHDAFLRGVRRFKRNNWVGIATLLPTRTVLQIRTHAQKYYAKVDKGEPFPDEPYPSQH 71
BLAST of mRNA_H-canaliculatus_M_contigs75281.1.1 vs.
Match: HTH (myb-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXQ4_ECTSI) HSP 1 Score: 90.9 bits (224), Expect = 3.710e-20 Identity = 38/63 (60.32%), Postives = 52/63 (82.54%), Query Frame = 1
Query: 1 VRLNKGMWTREEHEAFLRGVRLFKRGEWEAMATLVPTRTVVQIRSHSQKYFREIDRGELFPKE 189
+R NKG WT EEH FLRGV LFKR + EA+A+++PTRT++Q+R+H+QKYF ++D+GE FP E
Sbjct: 3 IRRNKGRWTHEEHAEFLRGVELFKRSDLEAVASMLPTRTILQVRTHAQKYFDKVDKGEPFPNE 65
BLAST of mRNA_H-canaliculatus_M_contigs75281.1.1 vs.
Match: HTH (myb-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVV5_9PHAE) HSP 1 Score: 90.9 bits (224), Expect = 7.300e-20 Identity = 38/63 (60.32%), Postives = 52/63 (82.54%), Query Frame = 1
Query: 1 VRLNKGMWTREEHEAFLRGVRLFKRGEWEAMATLVPTRTVVQIRSHSQKYFREIDRGELFPKE 189
+R NKG WT EEH FLRGV LFKR + EA+A+++PTRT++Q+R+H+QKYF ++D+GE FP E
Sbjct: 3 IRRNKGRWTHEEHAVFLRGVELFKRSDLEAVASMLPTRTILQVRTHAQKYFDKVDKGEPFPTE 65
BLAST of mRNA_H-canaliculatus_M_contigs75281.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC35_9PHAE) HSP 1 Score: 74.3 bits (181), Expect = 6.580e-14 Identity = 31/60 (51.67%), Postives = 47/60 (78.33%), Query Frame = 1
Query: 10 NKGMWTREEHEAFLRGVRLFKRGEWEAMATLVPTRTVVQIRSHSQKYFREIDRGELFPKE 189
N G WT+EEH+AFL+G+ L + W+ +A +V TR+ VQ+R+H QKYF+++D+GE FP+E
Sbjct: 6 NNGRWTKEEHDAFLQGLVLHGKN-WDLIAPIVKTRSAVQVRTHGQKYFKKVDKGERFPEE 64
BLAST of mRNA_H-canaliculatus_M_contigs75281.1.1 vs.
Match: HTH (myb-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPL1_ECTSI) HSP 1 Score: 70.5 bits (171), Expect = 1.190e-13 Identity = 35/66 (53.03%), Postives = 46/66 (69.70%), Query Frame = 1
Query: 1 VRLNKGMWTREEHEAFLRGVRLFKRGEWEAMAT---LVPTRTVVQIRSHSQKYFREIDRGELFPKE 189
+R NKG WTREEHEAFL G+ W+ + LVPTR+ +QIR+H+QKYF +I+RGE FP +
Sbjct: 4 IRKNKGKWTREEHEAFLSGL-------WQHESNSHALVPTRSALQIRTHAQKYFDKIERGEKFPAQ 62
BLAST of mRNA_H-canaliculatus_M_contigs75281.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C6P3_9STRA) HSP 1 Score: 68.9 bits (167), Expect = 2.010e-13 Identity = 28/56 (50.00%), Postives = 47/56 (83.93%), Query Frame = 1
Query: 7 LNKGMWTREEHEAFLRGVRLFKRGEWEAMATLVPTRTVVQIRSHSQKYFREIDRGE 174
+N G WTR+EHE F++G+ L+ R EW+ +A+++P+RTVVQIR+H+QKYF+++ + +
Sbjct: 18 VNTGRWTRDEHERFVKGLELYGR-EWKKVASMIPSRTVVQIRTHAQKYFQKLAKEQ 72
BLAST of mRNA_H-canaliculatus_M_contigs75281.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I1T7_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 1.120e-12 Identity = 33/53 (62.26%), Postives = 41/53 (77.36%), Query Frame = 1
Query: 16 GMWTREEHEAFLRGVRLFKRGEWEAMATLVPTRTVVQIRSHSQKYFREIDRGE 174
G WTREEHEAFL G+++F R EW+ +AT +PTRT QIRSH+QKYF + R E
Sbjct: 485 GRWTREEHEAFLNGLKVFGR-EWKKVATRIPTRTSAQIRSHAQKYFARLAREE 536
BLAST of mRNA_H-canaliculatus_M_contigs75281.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X5X5_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 1.620e-12 Identity = 32/64 (50.00%), Postives = 46/64 (71.88%), Query Frame = 1
Query: 16 GMWTREEHEAFLRGVRLFKRGEWEAMATLVPTRTVVQIRSHSQKYFREIDRGE--LFPKEVHSM 201
G WTREEHE FL G+RLF +G W+++A +V +RTV QIR+H+QK+ +I R + L K H++
Sbjct: 21 GTWTREEHERFLEGIRLFPKGPWKSVADVVQSRTVRQIRTHAQKHREKIARHQRGLRQKSPHNI 84
BLAST of mRNA_H-canaliculatus_M_contigs75281.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G907_9STRA) HSP 1 Score: 69.3 bits (168), Expect = 3.750e-12 Identity = 29/63 (46.03%), Postives = 45/63 (71.43%), Query Frame = 1
Query: 1 VRLNKGMWTREEHEAFLRGVRLFKRGEWEAMATLVPTRTVVQIRSHSQKYFREIDRGELFPKE 189
++ N G WT EH+ FL+G+ F W+ +ATL+ TRTVVQIR+H+QKY++++++ E KE
Sbjct: 158 IKANTGRWTEAEHKLFLKGLETFPYRAWKKIATLIKTRTVVQIRTHAQKYYQKLEKEEAKMKE 220 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75281.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs75281.1.1 >prot_H-canaliculatus_M_contigs75281.1.1 ID=prot_H-canaliculatus_M_contigs75281.1.1|Name=mRNA_H-canaliculatus_M_contigs75281.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=64bp MWTREEHEAFLRGVRLFKRGEWEAMATLVPTRTVVQIRSHSQKYFREIDRback to top mRNA from alignment at H-canaliculatus_M_contigs75281:36..245+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs75281.1.1 ID=mRNA_H-canaliculatus_M_contigs75281.1.1|Name=mRNA_H-canaliculatus_M_contigs75281.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=210bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75281:36..245+ (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75281:36..245+ >mRNA_H-canaliculatus_M_contigs75281.1.1 ID=mRNA_H-canaliculatus_M_contigs75281.1.1|Name=mRNA_H-canaliculatus_M_contigs75281.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=192bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75281:36..245+ (Hapterophycus canaliculatus Oshoro7m male)back to top |