mRNA_H-canaliculatus_M_contigs75281.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75281.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75281.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs75281.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXJ4_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 9.050e-25
Identity = 42/64 (65.62%), Postives = 52/64 (81.25%), Query Frame = 1
Query:    1 VRLNKGMWTREEHEAFLRGVRLFKRGEWEAMATLVPTRTVVQIRSHSQKYFREIDRGELFPKEV 192
            +R NKG WT EEH AFLRGVR FKR  W  +ATL+PTRTV+QIR+H+QKY+ ++D+GE FP EV
Sbjct:    8 IRRNKGRWTSEEHHAFLRGVRRFKRNNWVGIATLLPTRTVLQIRTHAQKYYAKVDKGEPFPDEV 71          
BLAST of mRNA_H-canaliculatus_M_contigs75281.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L149_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 2.290e-21
Identity = 43/69 (62.32%), Postives = 55/69 (79.71%), Query Frame = 1
Query:    1 VRLNKGMWTREEHEAFLRGVRLFKRGEWEAMATLVPTRTVVQIRSHSQKYFREIDRGELFPKEVH-SMH 204
            +R NKG WT EEH+AFLRGVR FKR  W  +ATL+PTRTV+QIR+H+QKY+ ++D+GE FP E + S H
Sbjct:    3 IRRNKGRWTSEEHDAFLRGVRRFKRNNWVGIATLLPTRTVLQIRTHAQKYYAKVDKGEPFPDEPYPSQH 71          
BLAST of mRNA_H-canaliculatus_M_contigs75281.1.1 vs.
Match: HTH (myb-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXQ4_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 3.710e-20
Identity = 38/63 (60.32%), Postives = 52/63 (82.54%), Query Frame = 1
Query:    1 VRLNKGMWTREEHEAFLRGVRLFKRGEWEAMATLVPTRTVVQIRSHSQKYFREIDRGELFPKE 189
            +R NKG WT EEH  FLRGV LFKR + EA+A+++PTRT++Q+R+H+QKYF ++D+GE FP E
Sbjct:    3 IRRNKGRWTHEEHAEFLRGVELFKRSDLEAVASMLPTRTILQVRTHAQKYFDKVDKGEPFPNE 65          
BLAST of mRNA_H-canaliculatus_M_contigs75281.1.1 vs.
Match: HTH (myb-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVV5_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 7.300e-20
Identity = 38/63 (60.32%), Postives = 52/63 (82.54%), Query Frame = 1
Query:    1 VRLNKGMWTREEHEAFLRGVRLFKRGEWEAMATLVPTRTVVQIRSHSQKYFREIDRGELFPKE 189
            +R NKG WT EEH  FLRGV LFKR + EA+A+++PTRT++Q+R+H+QKYF ++D+GE FP E
Sbjct:    3 IRRNKGRWTHEEHAVFLRGVELFKRSDLEAVASMLPTRTILQVRTHAQKYFDKVDKGEPFPTE 65          
BLAST of mRNA_H-canaliculatus_M_contigs75281.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC35_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 6.580e-14
Identity = 31/60 (51.67%), Postives = 47/60 (78.33%), Query Frame = 1
Query:   10 NKGMWTREEHEAFLRGVRLFKRGEWEAMATLVPTRTVVQIRSHSQKYFREIDRGELFPKE 189
            N G WT+EEH+AFL+G+ L  +  W+ +A +V TR+ VQ+R+H QKYF+++D+GE FP+E
Sbjct:    6 NNGRWTKEEHDAFLQGLVLHGKN-WDLIAPIVKTRSAVQVRTHGQKYFKKVDKGERFPEE 64          
BLAST of mRNA_H-canaliculatus_M_contigs75281.1.1 vs.
Match: HTH (myb-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPL1_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 1.190e-13
Identity = 35/66 (53.03%), Postives = 46/66 (69.70%), Query Frame = 1
Query:    1 VRLNKGMWTREEHEAFLRGVRLFKRGEWEAMAT---LVPTRTVVQIRSHSQKYFREIDRGELFPKE 189
            +R NKG WTREEHEAFL G+       W+  +    LVPTR+ +QIR+H+QKYF +I+RGE FP +
Sbjct:    4 IRKNKGKWTREEHEAFLSGL-------WQHESNSHALVPTRSALQIRTHAQKYFDKIERGEKFPAQ 62          
BLAST of mRNA_H-canaliculatus_M_contigs75281.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C6P3_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.010e-13
Identity = 28/56 (50.00%), Postives = 47/56 (83.93%), Query Frame = 1
Query:    7 LNKGMWTREEHEAFLRGVRLFKRGEWEAMATLVPTRTVVQIRSHSQKYFREIDRGE 174
            +N G WTR+EHE F++G+ L+ R EW+ +A+++P+RTVVQIR+H+QKYF+++ + +
Sbjct:   18 VNTGRWTRDEHERFVKGLELYGR-EWKKVASMIPSRTVVQIRTHAQKYFQKLAKEQ 72          
BLAST of mRNA_H-canaliculatus_M_contigs75281.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I1T7_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.120e-12
Identity = 33/53 (62.26%), Postives = 41/53 (77.36%), Query Frame = 1
Query:   16 GMWTREEHEAFLRGVRLFKRGEWEAMATLVPTRTVVQIRSHSQKYFREIDRGE 174
            G WTREEHEAFL G+++F R EW+ +AT +PTRT  QIRSH+QKYF  + R E
Sbjct:  485 GRWTREEHEAFLNGLKVFGR-EWKKVATRIPTRTSAQIRSHAQKYFARLAREE 536          
BLAST of mRNA_H-canaliculatus_M_contigs75281.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X5X5_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.620e-12
Identity = 32/64 (50.00%), Postives = 46/64 (71.88%), Query Frame = 1
Query:   16 GMWTREEHEAFLRGVRLFKRGEWEAMATLVPTRTVVQIRSHSQKYFREIDRGE--LFPKEVHSM 201
            G WTREEHE FL G+RLF +G W+++A +V +RTV QIR+H+QK+  +I R +  L  K  H++
Sbjct:   21 GTWTREEHERFLEGIRLFPKGPWKSVADVVQSRTVRQIRTHAQKHREKIARHQRGLRQKSPHNI 84          
BLAST of mRNA_H-canaliculatus_M_contigs75281.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G907_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 3.750e-12
Identity = 29/63 (46.03%), Postives = 45/63 (71.43%), Query Frame = 1
Query:    1 VRLNKGMWTREEHEAFLRGVRLFKRGEWEAMATLVPTRTVVQIRSHSQKYFREIDRGELFPKE 189
            ++ N G WT  EH+ FL+G+  F    W+ +ATL+ TRTVVQIR+H+QKY++++++ E   KE
Sbjct:  158 IKANTGRWTEAEHKLFLKGLETFPYRAWKKIATLIKTRTVVQIRTHAQKYYQKLEKEEAKMKE 220          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75281.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized9.050e-2565.63protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.290e-2162.32protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
HTH3.710e-2060.32myb-type domain-containing protein n=1 Tax=Ectocar... [more]
HTH7.300e-2060.32myb-type domain-containing protein n=1 Tax=Ectocar... [more]
Uncharacterized6.580e-1451.67protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
HTH1.190e-1353.03myb-type domain-containing protein n=1 Tax=Ectocar... [more]
Hypothetical2.010e-1350.00protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014... [more]
Hypothetical1.120e-1262.26protein n=1 Tax=Odontella aurita TaxID=265563 RepI... [more]
Uncharacterized1.620e-1250.00protein n=1 Tax=Aphanomyces euteiches TaxID=100861... [more]
Uncharacterized3.750e-1246.03protein n=1 Tax=Albugo candida TaxID=65357 RepID=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75281contigH-canaliculatus_M_contigs75281:36..245 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog42099.EPrPV00000017631
PFAMsMyb_DNA-binding
Model size210
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.29e-11
EggNOG OGsKOG0724@1|root,KOG0724@2759|Eukaryota,1MGWQ@121069|Pythiales
DescriptionSource PGD
Cds size192
COG categoryK
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854090.3360972-UTR-H-canaliculatus_M_contigs75281:35..531696854090.3360972-UTR-H-canaliculatus_M_contigs75281:35..53Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs75281 36..53 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854090.351796-CDS-H-canaliculatus_M_contigs75281:53..2451696854090.351796-CDS-H-canaliculatus_M_contigs75281:53..245Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75281 54..245 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75281.1.1prot_H-canaliculatus_M_contigs75281.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75281 54..245 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75281.1.1

>prot_H-canaliculatus_M_contigs75281.1.1 ID=prot_H-canaliculatus_M_contigs75281.1.1|Name=mRNA_H-canaliculatus_M_contigs75281.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=64bp
MWTREEHEAFLRGVRLFKRGEWEAMATLVPTRTVVQIRSHSQKYFREIDR
GELFPKEVHSMHA*
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mRNA from alignment at H-canaliculatus_M_contigs75281:36..245+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75281.1.1 ID=mRNA_H-canaliculatus_M_contigs75281.1.1|Name=mRNA_H-canaliculatus_M_contigs75281.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=210bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75281:36..245+ (Hapterophycus canaliculatus Oshoro7m male)
GTTCGGCTGAACAAGGGCATGTGGACGCGCGAGGAGCATGAGGCGTTTCT ACGCGGGGTGCGACTCTTCAAGCGCGGCGAGTGGGAGGCGATGGCCACCC TGGTGCCCACACGCACCGTTGTGCAGATAAGGTCGCACTCCCAGAAGTAC TTTCGCGAGATCGACAGAGGGGAGCTCTTCCCGAAAGAGGTACATTCGAT GCATGCTTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75281:36..245+

>mRNA_H-canaliculatus_M_contigs75281.1.1 ID=mRNA_H-canaliculatus_M_contigs75281.1.1|Name=mRNA_H-canaliculatus_M_contigs75281.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=192bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75281:36..245+ (Hapterophycus canaliculatus Oshoro7m male)
ATGTGGACGCGCGAGGAGCATGAGGCGTTTCTACGCGGGGTGCGACTCTT
CAAGCGCGGCGAGTGGGAGGCGATGGCCACCCTGGTGCCCACACGCACCG
TTGTGCAGATAAGGTCGCACTCCCAGAAGTACTTTCGCGAGATCGACAGA
GGGGAGCTCTTCCCGAAAGAGGTACATTCGATGCATGCTTGA
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