mRNA_H-canaliculatus_M_contigs7527.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7527.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7527.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7527.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS37_ECTSI)

HSP 1 Score: 189 bits (481), Expect = 2.510e-58
Identity = 94/113 (83.19%), Postives = 100/113 (88.50%), Query Frame = 1 
Query:    1 MAIAAGVIAVVWSEETAADRIGYFVDIFNICLYASPLALAWKVLRTRSTSGMYLPLSITITAAAALWATYGYLTEDWFVAAPQSVGLLAGLAQLSLFLRFGVADNNEPSEAAA 339
            M  +A V+ VVWS  TAAD IGYFVD+FN+CLYASPL LAWKVLRTRSTSGMYLPLSITI AAAALWATYGYLT DWFVAAPQSVG LAGLAQLSLFLRFG+ADNN+PSE  A
Sbjct:    1 MVTSAVVMTVVWSSTTAADSIGYFVDLFNVCLYASPLELAWKVLRTRSTSGMYLPLSITIAAAAALWATYGYLTSDWFVAAPQSVGFLAGLAQLSLFLRFGIADNNQPSEGQA 113
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BLAST of mRNA_H-canaliculatus_M_contigs7527.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH92_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 3.450e-58
Identity = 96/113 (84.96%), Postives = 102/113 (90.27%), Query Frame = 1 
Query:    1 MAIAAGVIAVVWSEETAADRIGYFVDIFNICLYASPLALAWKVLRTRSTSGMYLPLSITITAAAALWATYGYLTEDWFVAAPQSVGLLAGLAQLSLFLRFGVADNNEPSEAAA 339
            MA +A V+AVVWS  TAAD IGYFVD+FN+CLYASPL LAWKVLRTRSTSGMYLPLSITI AAAALWATYGYLT DWFVAAPQSVG LAGLAQLSLFLRFG+ADNN+PSE  A
Sbjct:  112 MATSAVVMAVVWSSTTAADSIGYFVDVFNVCLYASPLELAWKVLRTRSTSGMYLPLSITIAAAAALWATYGYLTSDWFVAAPQSVGFLAGLAQLSLFLRFGIADNNQPSEGQA 224
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BLAST of mRNA_H-canaliculatus_M_contigs7527.1.1 vs.
Match: Nodulin (MtN3 family protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RSA9_PRUDU)

HSP 1 Score: 73.2 bits (178), Expect = 1.310e-12
Identity = 32/94 (34.04%), Postives = 56/94 (59.57%), Query Frame = 1 
Query:   40 EETAADRIGYFVDIFNICLYASPLALAWKVLRTRSTSGMYLPLSITITAAAALWATYGYLTEDWFVAAPQSVGLLAGLAQLSLFLRFGVADNNE 321
            E      IG+   +FN+ ++A+PL +  +V+RT S   M   LS  +T  A +W  YG++T+D+++A P  +G L G+AQ+ L+L +  +  N+
Sbjct:  100 EAERVSAIGWMCAVFNVAVFAAPLTIMRQVIRTNSVEHMPFSLSFFLTLCATMWFFYGFITKDYYIALPNVLGFLLGVAQMILYLTYKNSGKND 193
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BLAST of mRNA_H-canaliculatus_M_contigs7527.1.1 vs.
Match: Bidirectional (sugar transporter SWEET n=4 Tax=Coffea TaxID=13442 RepID=A0A6P6SBV8_COFAR)

HSP 1 Score: 73.9 bits (180), Expect = 1.370e-12
Identity = 32/85 (37.65%), Postives = 54/85 (63.53%), Query Frame = 1 
Query:   61 IGYFVDIFNICLYASPLALAWKVLRTRSTSGMYLPLSITITAAAALWATYGYLTEDWFVAAPQSVGLLAGLAQLSLFLRFGVADN 315
            +G+   +F++C++A+PL++  KV+RTRS   M   LS  +T  A +W  YG+L +D+++AAP  +G   G AQ+ L+  +   DN
Sbjct:  134 VGWICSVFSVCVFAAPLSIMMKVIRTRSVEFMPFSLSFFLTLCAVMWFFYGFLIKDYYIAAPNILGFAFGTAQMVLYAIYRERDN 218
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BLAST of mRNA_H-canaliculatus_M_contigs7527.1.1 vs.
Match: Bidirectional (sugar transporter SWEET n=7 Tax=Prunus TaxID=3754 RepID=M5VZU0_PRUPE)

HSP 1 Score: 73.2 bits (178), Expect = 1.970e-12
Identity = 32/94 (34.04%), Postives = 57/94 (60.64%), Query Frame = 1 
Query:   40 EETAADRIGYFVDIFNICLYASPLALAWKVLRTRSTSGMYLPLSITITAAAALWATYGYLTEDWFVAAPQSVGLLAGLAQLSLFLRFGVADNNE 321
            E      +G+   +FNI ++A+PL++  +V+RT+S   M   LS  +T  A +W  YG  T+D+++A P  +G L G+AQ+ L+L++  +  N+
Sbjct:  127 EAKRVSAVGWMCAVFNIAVFAAPLSIVRQVIRTKSVEYMPFSLSFFLTLCATMWFFYGLFTKDYYIALPNVLGFLLGVAQMILYLKYKNSGKND 220
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BLAST of mRNA_H-canaliculatus_M_contigs7527.1.1 vs.
Match: bidirectional (sugar transporter NEC1-like n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1CDD56)

HSP 1 Score: 72.4 bits (176), Expect = 2.540e-12
Identity = 29/78 (37.18%), Postives = 54/78 (69.23%), Query Frame = 1 
Query:   61 IGYFVDIFNICLYASPLALAWKVLRTRSTSGMYLPLSITITAAAALWATYGYLTEDWFVAAPQSVGLLAGLAQLSLFL 294
            +G+   +F++C++ +PL +A +V++T++   M +PLS+ +T +  +W  YG   +D+F+AAP  VG L G+AQ+ L+L
Sbjct:  134 VGWISSVFSLCVFVAPLGIARRVIKTKNVEYMPVPLSLFLTLSGVVWFFYGLFIKDFFIAAPNVVGFLFGIAQIILYL 211
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BLAST of mRNA_H-canaliculatus_M_contigs7527.1.1 vs.
Match: Bidirectional (sugar transporter SWEET n=2 Tax=Cuscuta sect. Cleistogrammica TaxID=1824901 RepID=A0A328DI36_9ASTE)

HSP 1 Score: 72.4 bits (176), Expect = 3.110e-12
Identity = 34/97 (35.05%), Postives = 59/97 (60.82%), Query Frame = 1 
Query:    1 MAIAAGVIAVVWSEETAADRIGYFVDIFNICLYASPLALAWKVLRTRSTSGMYLPLSITITAAAALWATYGYLTEDWFVAAPQSVGLLAGLAQLSLF 291
            M +A G+  ++         +G+   IF+IC++A+PL++  KV+RT+S   M   LS+ +T +A +W  YG L  D++VA P  +G + G+AQ+ L+
Sbjct:   58 MGVAVGLTYMLLDGHLRITIVGWICAIFSICVFAAPLSIMRKVIRTKSVKYMPFTLSLALTLSAIVWLQYGLLIHDYYVAMPNVLGFIFGMAQMILY 154
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BLAST of mRNA_H-canaliculatus_M_contigs7527.1.1 vs.
Match: Bidirectional (sugar transporter SWEET n=5 Tax=Maleae TaxID=721813 RepID=A0A5N5HPW1_9ROSA)

HSP 1 Score: 71.6 bits (174), Expect = 9.670e-12
Identity = 31/88 (35.23%), Postives = 55/88 (62.50%), Query Frame = 1 
Query:   55 DRIGYFVDIFNICLYASPLALAWKVLRTRSTSGMYLPLSITITAAAALWATYGYLTEDWFVAAPQSVGLLAGLAQLSLFLRFGVADNN 318
              +G+   +FNI ++A+PL++  +V+RT+S   M   LS  +T  A +W  YG  T+D+++A P  +G L G+AQ+ L++ +  + NN
Sbjct:  132 STVGWICAVFNIAVFAAPLSIMRQVIRTKSVEFMPFSLSFFLTLCATMWFFYGLFTKDYYIALPNVLGFLLGIAQMILYMTYKNSGNN 219
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BLAST of mRNA_H-canaliculatus_M_contigs7527.1.1 vs.
Match: Bidirectional (sugar transporter SWEET n=4 Tax=Nicotiana TaxID=4085 RepID=A0A1S3Z2Z8_TOBAC)

HSP 1 Score: 71.6 bits (174), Expect = 1.090e-11
Identity = 30/87 (34.48%), Postives = 54/87 (62.07%), Query Frame = 1 
Query:   40 EETAADRIGYFVDIFNICLYASPLALAWKVLRTRSTSGMYLPLSITITAAAALWATYGYLTEDWFVAAPQSVGLLAGLAQLSLFLRF 300
            ++T    +G+   +F++C++A+PL++  +V++TRS   M  PLS  +T  A +W  YG L +D ++A P  +G   G+AQ+ L+  F
Sbjct:  128 DKTRVTIVGWICAVFSVCVFAAPLSIMRRVIKTRSVEFMPFPLSFFLTICAVMWFFYGLLIKDMYIATPNILGFTFGIAQMILYAIF 214
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7527.1.1 vs.
Match: Bidirectional (sugar transporter SWEET n=2 Tax=Medicago truncatula TaxID=3880 RepID=G7K8I6_MEDTR)

HSP 1 Score: 71.2 bits (173), Expect = 1.120e-11
Identity = 33/86 (38.37%), Postives = 54/86 (62.79%), Query Frame = 1 
Query:   61 IGYFVDIFNICLYASPLALAWKVLRTRSTSGMYLPLSITITAAAALWATYGYLTEDWFVAAPQSVGLLAGLAQLSLFLRFGVADNN 318
            +G    IFNI ++A+PL++  KV++TRS   M  PLS+ +T  A +W  YG+  +D ++  P  +G L G++Q+ L+L +  A NN
Sbjct:  133 VGMICTIFNIGMFAAPLSIMKKVIKTRSVEYMPFPLSLFLTICATMWFFYGFFDKDKYIMLPNGLGFLLGVSQMILYLIYKNAKNN 218
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7527.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized2.510e-5883.19protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.450e-5884.96protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Nodulin1.310e-1234.04MtN3 family protein n=1 Tax=Prunus dulcis TaxID=37... [more]
Bidirectional1.370e-1237.65sugar transporter SWEET n=4 Tax=Coffea TaxID=13442... [more]
Bidirectional1.970e-1234.04sugar transporter SWEET n=7 Tax=Prunus TaxID=3754 ... [more]
bidirectional2.540e-1237.18sugar transporter NEC1-like n=1 Tax=Olea europaea ... [more]
Bidirectional3.110e-1235.05sugar transporter SWEET n=2 Tax=Cuscuta sect. Clei... [more]
Bidirectional9.670e-1235.23sugar transporter SWEET n=5 Tax=Maleae TaxID=72181... [more]
Bidirectional1.090e-1134.48sugar transporter SWEET n=4 Tax=Nicotiana TaxID=40... [more]
Bidirectional1.120e-1138.37sugar transporter SWEET n=2 Tax=Medicago truncatul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7527contigH-canaliculatus_M_contigs7527:1..2556 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LS37
PFAMsMtN3_slv
Model size549
Max annot lvl2759|Eukaryota
KEGG koko:K15382
KEGG TC9.A.58.1
Hectar predicted targeting categorysignal peptide
Exons3
Evalue4.11e-59
EggNOG OGsKOG1623@1|root,KOG1623@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-12_004940.1
Descriptionsugar transmembrane transporter activity
Cds size549
COG categoryU
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854090.260507-CDS-H-canaliculatus_M_contigs7527:0..2531696854090.260507-CDS-H-canaliculatus_M_contigs7527:0..253Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7527 1..253 -
1696854090.279821-CDS-H-canaliculatus_M_contigs7527:1171..13411696854090.279821-CDS-H-canaliculatus_M_contigs7527:1171..1341Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7527 1172..1341 -
1696854090.2935529-CDS-H-canaliculatus_M_contigs7527:2430..25561696854090.2935529-CDS-H-canaliculatus_M_contigs7527:2430..2556Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7527 2431..2556 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7527.1.1prot_H-canaliculatus_M_contigs7527.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7527 1..2556 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7527.1.1

>prot_H-canaliculatus_M_contigs7527.1.1 ID=prot_H-canaliculatus_M_contigs7527.1.1|Name=mRNA_H-canaliculatus_M_contigs7527.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=183bp
MAIAAGVIAVVWSEETAADRIGYFVDIFNICLYASPLALAWKVLRTRSTS
GMYLPLSITITAAAALWATYGYLTEDWFVAAPQSVGLLAGLAQLSLFLRF
GVADNNEPSEAAARGGAVAVETGLDAGFGNDSGKDPADSPFDNDAAPSSA
GAGDGNDNQPPGALSDGSTLPNGGSPRRGGGGG
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mRNA from alignment at H-canaliculatus_M_contigs7527:1..2556-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7527.1.1 ID=mRNA_H-canaliculatus_M_contigs7527.1.1|Name=mRNA_H-canaliculatus_M_contigs7527.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=2556bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7527:1..2556- (Hapterophycus canaliculatus Oshoro7m male)
ATGGCGATCGCTGCTGGTGTGATCGCTGTTGTCTGGTCTGAAGAGACGGC
GGCCGACCGTATCGGCTACTTCGTCGACATATTCAATATCTGCCTCTACG
CCTCGCCCCTCGCCCTAGCCTGGAAGGTGAGGAGGAGGAGAAACACGCCC
GGGGAGCGGCAGGGCCGGGAGCGTTCGTTCGGGAGCTGTCTCGTTTCTTG
CGCGGCTTACTCGTGTTGCGAGTCCCTCGTCTTTTTTTTTGGCTGCGTGC
TTGATTGGACGTCGCCCCCGTTGGCAAGGTTTATGTTTGACGGCGTGCGC
CTCTTCGGGGGTCCACCGGGGGATCGACATCTCCGGTTGTCTTTGGCTGG
CACATAACTGTCCTGTAAGTGTCAAGCGACTGTCCTGTAAGTGTCCAGCG
ACCGTCGATCTCTCCCCTCCCTGCCGCTGTTTGTGCTCGGGGTGTTGTTC
TACCACGCGTTCGCAGCGCCGGCAGTGACACGAGCGGTGTCCGTTTTGTG
CGGTGAATTCCTCGCGCACAACGGCTTATCCTTTGCGGCCGTTCTTCTTG
CGGTGGATGAAGTGTCTTGCTCGCTTGAGACATTTTTTGGGGTTGACACG
TGAGGGCAAGATAAGAGTAAGGAAGCAGTCGACGTTCGAGGAACTCGAGC
TCGAGCTACGACCGAAAATTGTGAAACAGATGAGAGCGCGGAGCGAGACA
ACTTGCAGCATTCCTCGTGTCTAAGTTCGGCTGTATTCTCTTTTTATTAA
AGAAAGCGCAAGACACGGGCTATTGGCGTCCAAATCGCCAGGAAGGGTGC
TGGCCAAGAGTACTGTTTTCATCCCCCGCGACCGACGTACCAAGAAACGA
CGAAGAACAAACGACAGCCTAACACCCACAACAACAACACCACCTACAAC
AACAACGTTTTCAACAAAGAGATCTGCAACCGAATGCCCGAAAAAAAACA
TCGCTCGGGACAACAATCGCGACACCTTGAACCCAAACAAAGACAGAAAA
AAAAACGTAGGTCACGATGATGACAAGTTCGATTTCATACAATTCCGGTA
AGTTACACAAGACTCTGTCCTGTTCATGCATTTGTGCCCATCAATGATCC
CTCAATGTTTGGACCTCAAGAGAAGCGTCGAGCTAGGCCTCGCACGACGT
ACCTCAGGAGGTGTTCTAACGGTGTTGTTATGTTTTCTTCCAAAAAAACG
CTCACGACGACACAGGTGCTTCGTACCCGCTCCACTTCGGGCATGTACCT
GCCTCTGTCCATCACCATCACGGCGGCGGCAGCCCTATGGGCAACGTACG
GCTATCTCACAGAGGACTGGTTCGTCGCCGCGCCGCAATCGGTTGGCCTC
CTGGCCGGCCTGGCGCAGCTCTCGCTCTTCCTCAGGTCAGCGAAGCGTTG
AAGATATTTTGTCGCGAACACTGCAGCTCTACAGGTTTCCATCCGTTCTT
TTTTTACTATAATCTATGCTTTTCTCGCGGCGACGCGCGATCTCAATTGA
TCGATATTATATAGGACGCACATGGGGGGATGTTCATGATGGGTGCAGAT
ACTTCACATTCTTTATATCCTACGTCGAAGAGCTTGGATTTTTAGCACCC
TTTTTTCAGTTGTTTTTCCGGCGGTATCAAGAGGCAGCAGTGTCGAGAGG
CAGCACGCGGCCTCTCGCTAAGAAACGATACATAAGGGCCAAAGACTATC
GATACAACCTGGGTTATAATTCTCGACAACCAGCTAACTTGAGAAGGGCA
GTTTGGGCAAGTAAATATCCTTGCCCGCGAGATCCAGAGACTCCTTATAC
TCGTCTGCGCGTGTATCGGGTGTGAAAGGAACGACTGAGTTGACCTTAAG
AAGAGATGCAACCGGCAGAGGAACGCAGTGGGAAGAGCAGATAGGCAGGC
TCGGTTCTGCGCTTGCAAGCAAGACAGGTCTTTGGATCGCTATCTGAACA
TCCGAAAATTGGCTGATGTCTTCGTAGAGACCCCAACAGACGTTGATGTC
TTAGGGGAGATGTGGCGTGGTGTAATCGTGAGTGTCATCTTCGAAGCACC
CTGTTGCGACGTTCCACCAAGTCTCGGCTCCACCCAAAAACAAGGGACAG
GTGGAAACAACGCTTTTGATTGAGCCTACTGCTGTTGCTCTTTTTGTTTT
CGCCTTTGCACCGTGCGGCAAGCACCTTTTACATTGCACCGCGCGCCTCA
CCCGACTACCCGTGAGTCACTCGGCGAAACTTCGCCCTAACATAGCGCGC
ACGCGTGGGCCGCGTCACTTGGTATCGTGCTGTACTCGACAAAAACATGG
CAGGTTCGGCGTTGCAGACAACAACGAGCCGTCCGAGGCGGCGGCGCGGG
GGGGGGCAGTGGCAGTGGAGACGGGCCTTGACGCCGGTTTCGGGAACGAT
TCTGGGAAGGATCCCGCTGACTCTCCGTTCGACAATGATGCGGCACCATC
ATCGGCAGGGGCGGGTGACGGTAACGACAACCAGCCGCCGGGGGCACTGT
CGGACGGCTCCACCCTGCCCAATGGCGGAAGTCCGCGAAGAGGTGGGGGG
GGAGGT
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7527:1..2556-

>mRNA_H-canaliculatus_M_contigs7527.1.1 ID=mRNA_H-canaliculatus_M_contigs7527.1.1|Name=mRNA_H-canaliculatus_M_contigs7527.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=549bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7527:1..2556- (Hapterophycus canaliculatus Oshoro7m male)
ATGGCGATCGCTGCTGGTGTGATCGCTGTTGTCTGGTCTGAAGAGACGGC
GGCCGACCGTATCGGCTACTTCGTCGACATATTCAATATCTGCCTCTACG
CCTCGCCCCTCGCCCTAGCCTGGAAGGTGCTTCGTACCCGCTCCACTTCG
GGCATGTACCTGCCTCTGTCCATCACCATCACGGCGGCGGCAGCCCTATG
GGCAACGTACGGCTATCTCACAGAGGACTGGTTCGTCGCCGCGCCGCAAT
CGGTTGGCCTCCTGGCCGGCCTGGCGCAGCTCTCGCTCTTCCTCAGGTTC
GGCGTTGCAGACAACAACGAGCCGTCCGAGGCGGCGGCGCGGGGGGGGGC
AGTGGCAGTGGAGACGGGCCTTGACGCCGGTTTCGGGAACGATTCTGGGA
AGGATCCCGCTGACTCTCCGTTCGACAATGATGCGGCACCATCATCGGCA
GGGGCGGGTGACGGTAACGACAACCAGCCGCCGGGGGCACTGTCGGACGG
CTCCACCCTGCCCAATGGCGGAAGTCCGCGAAGAGGTGGGGGGGGAGGT
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