mRNA_H-canaliculatus_M_contigs75266.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75266.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75266.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs75266.1.1 vs.
Match: Glycerol-3-phosphate (dehydrogenase [NAD(+)] n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZY6_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 5.130e-36
Identity = 61/71 (85.92%), Postives = 68/71 (95.77%), Query Frame = 1 
Query:    1 DGFEHEIRQWVFPERIVHNGREACLTEVINTEHENVKYLPGVKLPDNIVAEGDLALAVKDATIVIFVLPHQ 213
            +GFEH+IRQWVFPE++ HNG EACLTEVIN EHENVKYLPGVKLP+N+VAEGDLALAVKDATI+IFVLPHQ
Sbjct:   60 EGFEHQIRQWVFPEKVSHNGVEACLTEVINREHENVKYLPGVKLPENLVAEGDLALAVKDATILIFVLPHQ 130
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BLAST of mRNA_H-canaliculatus_M_contigs75266.1.1 vs.
Match: Glycerol-3-phosphate (dehydrogenase [NAD(+)] n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUR6_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 6.650e-36
Identity = 61/71 (85.92%), Postives = 68/71 (95.77%), Query Frame = 1 
Query:    1 DGFEHEIRQWVFPERIVHNGREACLTEVINTEHENVKYLPGVKLPDNIVAEGDLALAVKDATIVIFVLPHQ 213
            +GFEH+IRQWVFPE++ HNG EACLTEVIN EHENVKYLPGVKLP+N+VAEGDLALAVKDATI+IFVLPHQ
Sbjct:   76 EGFEHQIRQWVFPEKVSHNGVEACLTEVINKEHENVKYLPGVKLPENLVAEGDLALAVKDATILIFVLPHQ 146
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BLAST of mRNA_H-canaliculatus_M_contigs75266.1.1 vs.
Match: Glycerol-3-phosphate (dehydrogenase, putative (Fragment) n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5LJY9_PERM5)

HSP 1 Score: 90.1 bits (222), Expect = 3.080e-21
Identity = 40/69 (57.97%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:    7 FEHEIRQWVFPERIVHNGREACLTEVINTEHENVKYLPGVKLPDNIVAEGDLALAVKDATIVIFVLPHQ 213
            ++ E+R WVF E + + G +  L +VINT HENVKYLPG+ LPDN+VA+ DL  AV  A I+IFVLPHQ
Sbjct:   70 YDEEVRMWVFDEEVDYKGEKRSLVDVINTHHENVKYLPGITLPDNVVAKADLKEAVVGADILIFVLPHQ 138
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BLAST of mRNA_H-canaliculatus_M_contigs75266.1.1 vs.
Match: NAD_Gly3P_dh_N (domain-containing protein (Fragment) n=2 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6SQY3_PEROL)

HSP 1 Score: 90.9 bits (224), Expect = 7.220e-21
Identity = 39/69 (56.52%), Postives = 54/69 (78.26%), Query Frame = 1 
Query:    7 FEHEIRQWVFPERIVHNGREACLTEVINTEHENVKYLPGVKLPDNIVAEGDLALAVKDATIVIFVLPHQ 213
            ++ E+R WVF E++ ++G +  L E+INT HENVKYLPG+ LP+N+VA+ DL  AV+ A I+IFVLPHQ
Sbjct:   47 YDEEVRMWVFDEQVDYHGEQRSLVEIINTHHENVKYLPGIALPENVVAKPDLQEAVEGADILIFVLPHQ 115
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BLAST of mRNA_H-canaliculatus_M_contigs75266.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9SPK1_PHATR)

HSP 1 Score: 87.8 bits (216), Expect = 1.450e-20
Identity = 41/70 (58.57%), Postives = 53/70 (75.71%), Query Frame = 1 
Query:    7 FEHEIRQWVFPERI-VHNGREACLTEVINTEHENVKYLPGVKLPDNIVAEGDLALAVKDATIVIFVLPHQ 213
            FE ++  WVF E + + +G +  LTE+IN+ HENVKYLPG+ LP NIVA  DLA A +DAT++IFVLPHQ
Sbjct:   41 FESQVNMWVFEEMVELEDGSQKKLTEIINSRHENVKYLPGIPLPSNIVATPDLAEACRDATLLIFVLPHQ 110
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BLAST of mRNA_H-canaliculatus_M_contigs75266.1.1 vs.
Match: Glycerol-3-phosphate (dehydrogenase [NAD(+)] n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2J0T8_9FUNG)

HSP 1 Score: 90.9 bits (224), Expect = 4.790e-20
Identity = 45/72 (62.50%), Postives = 54/72 (75.00%), Query Frame = 1 
Query:    7 FEHEIRQWVFPERIVHNGREACLTEVINTEHENVKYLPGVKLPDNIVAEGDLALAVKDATIVIFVLPHQVGY 222
            FE EIR WVF E++  NGR   LTE+IN +HEN+KYLP VKLPDN+VA  D+  A KDA I++FVLPHQ  Y
Sbjct:   33 FEKEIRMWVFEEKV--NGRN--LTEIINEQHENIKYLPNVKLPDNVVAIPDVTEAAKDADILVFVLPHQFVY 100
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75266.1.1 vs.
Match: Glycerol-3-phosphate (dehydrogenase [NAD(+)] n=4 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6M5I0_PEROL)

HSP 1 Score: 91.7 bits (226), Expect = 6.760e-20
Identity = 40/69 (57.97%), Postives = 54/69 (78.26%), Query Frame = 1 
Query:    7 FEHEIRQWVFPERIVHNGREACLTEVINTEHENVKYLPGVKLPDNIVAEGDLALAVKDATIVIFVLPHQ 213
            ++ E+R WVF E++ ++G++  L ++INT HENVKYLPG+ LP N+VAE DL  AVK A I+IFVLPHQ
Sbjct:  819 YDEEVRMWVFDEQVDYHGQQRSLVDIINTHHENVKYLPGIALPANVVAEPDLQEAVKGADILIFVLPHQ 887
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75266.1.1 vs.
Match: Glycerol-3-phosphate (dehydrogenase [NAD(+)] n=1 Tax=Ramazzottius varieornatus TaxID=947166 RepID=A0A1D1W2T2_RAMVA)

HSP 1 Score: 90.5 bits (223), Expect = 7.830e-20
Identity = 42/69 (60.87%), Postives = 56/69 (81.16%), Query Frame = 1 
Query:    7 FEHEIRQWVFPERIVHNGREACLTEVINTEHENVKYLPGVKLPDNIVAEGDLALAVKDATIVIFVLPHQ 213
            F++E+R WVF E +  NGR+  LTE+IN +HENVKYLPG+KLPDNIVAE D+  A +DA +++FV+PHQ
Sbjct:   40 FQNEVRMWVFEEEV--NGRK--LTEIINQDHENVKYLPGIKLPDNIVAEPDVVKAAQDADMLLFVIPHQ 104
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75266.1.1 vs.
Match: Glycerol-3-phosphate (dehydrogenase [NAD(+)] n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BLG9_PYTIN)

HSP 1 Score: 90.1 bits (222), Expect = 8.530e-20
Identity = 46/71 (64.79%), Postives = 54/71 (76.06%), Query Frame = 1 
Query:    1 DGFEHEIRQWVFPERIVHNGREACLTEVINTEHENVKYLPGVKLPDNIVAEGDLALAVKDATIVIFVLPHQ 213
            D F+ +I  WVF E +  NGR+  LTE+INTEHENVKYLPG KLP+NI+A  DL  AVKDA I+IF LPHQ
Sbjct:   30 DVFQRDIPMWVFEEEV--NGRK--LTEIINTEHENVKYLPGYKLPENIIAVPDLLTAVKDADILIFCLPHQ 96
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75266.1.1 vs.
Match: Glycerol-3-phosphate (dehydrogenase [NAD(+)] n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5KYJ8_PERM5)

HSP 1 Score: 90.1 bits (222), Expect = 1.320e-19
Identity = 40/69 (57.97%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:    7 FEHEIRQWVFPERIVHNGREACLTEVINTEHENVKYLPGVKLPDNIVAEGDLALAVKDATIVIFVLPHQ 213
            ++ E+R WVF E + + G +  L +VINT HENVKYLPG+ LPDN+VA+ DL  AV  A I+IFVLPHQ
Sbjct:   48 YDEEVRMWVFDEEVDYKGEKRSLVDVINTHHENVKYLPGITLPDNVVAKADLKEAVVGADILIFVLPHQ 116
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75266.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Glycerol-3-phosphate5.130e-3685.92dehydrogenase [NAD(+)] n=1 Tax=Ectocarpus sp. CCAP... [more]
Glycerol-3-phosphate6.650e-3685.92dehydrogenase [NAD(+)] n=1 Tax=Ectocarpus siliculo... [more]
Glycerol-3-phosphate3.080e-2157.97dehydrogenase, putative (Fragment) n=1 Tax=Perkins... [more]
NAD_Gly3P_dh_N7.220e-2156.52domain-containing protein (Fragment) n=2 Tax=Perki... [more]
Hypothetical1.450e-2058.57protein (Fragment) n=1 Tax=Phaeodactylum tricornut... [more]
Glycerol-3-phosphate4.790e-2062.50dehydrogenase [NAD(+)] n=1 Tax=Absidia repens TaxI... [more]
Glycerol-3-phosphate6.760e-2057.97dehydrogenase [NAD(+)] n=4 Tax=Perkinsus olseni Ta... [more]
Glycerol-3-phosphate7.830e-2060.87dehydrogenase [NAD(+)] n=1 Tax=Ramazzottius varieo... [more]
Glycerol-3-phosphate8.530e-2064.79dehydrogenase [NAD(+)] n=2 Tax=Pythium TaxID=4797 ... [more]
Glycerol-3-phosphate1.320e-1957.97dehydrogenase [NAD(+)] n=1 Tax=Perkinsus marinus (... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75266contigH-canaliculatus_M_contigs75266:164..388 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog85929.M3BUB0
Preferred nameGPD1
PFAMsNAD_Gly3P_dh_C,NAD_Gly3P_dh_N
Model size225
Max annot lvl4751|Fungi
KEGG rclassRC00029
KEGG koko:K00006
KEGG ReactionR00842
KEGG Pathwayko00564,ko01110,ko04011,map00564,map01110,map04011
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004367,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005777,GO:0005829,GO:0005975,GO:0006066,GO:0006071,GO:0006072,GO:0006114,GO:0006116,GO:0006139,GO:0006605,GO:0006625,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006884,GO:0006886,GO:0006950,GO:0006970,GO:0006972,GO:0006973,GO:0006996,GO:0007031,GO:0008104,GO:0008150,GO:0008152,GO:0008361,GO:0009056,GO:0009058,GO:0009117,GO:0009628,GO:0009987,GO:0009992,GO:0015031,GO:0015833,GO:0015919,GO:0016043,GO:0016051,GO:0016491,GO:0016558,GO:0016614,GO:0016616,GO:0017038,GO:0019362,GO:0019400,GO:0019401,GO:0019637,GO:0019674,GO:0019725,GO:0019751,GO:0030104,GO:0032535,GO:0033036,GO:0033365,GO:0033554,GO:0034613,GO:0034637,GO:0034641,GO:0036094,GO:0042579,GO:0042592,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043574,GO:0044237,GO:0044238,GO:0044249,GO:0044262,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0044743,GO:0045184,GO:0046165,GO:0046168,GO:0046173,GO:0046434,GO:0046483,GO:0046496,GO:0046907,GO:0048037,GO:0048878,GO:0050662,GO:0050896,GO:0051179,GO:0051186,GO:0051234,GO:0051287,GO:0051641,GO:0051649,GO:0051716,GO:0052646,GO:0055082,GO:0055085,GO:0055086,GO:0055114,GO:0065002,GO:0065007,GO:0065008,GO:0070727,GO:0071214,GO:0071470,GO:0071474,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0072524,GO:0072594,GO:0072662,GO:0072663,GO:0090066,GO:0097159,GO:0104004,GO:1901135,GO:1901136,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901575,GO:1901576,GO:1901615,GO:1901617
Exons1
Evalue3.17e-20
EggNOG OGsCOG0240@1|root,KOG2711@2759|Eukaryota,38E7F@33154|Opisthokonta,3NVN7@4751|Fungi,3QKNN@4890|Ascomycota,1ZXRI@147541|Dothideomycetes,3MJH4@451867|Dothideomycetidae
Ec32 ortholog descriptionglycerol-3-phosphate dehydrogenase
Ec32 orthologEc-19_004200.1
EC1.1.1.8
DescriptionGlycerol-3-phosphate dehydrogenase NAD( )
Cds size225
COG categoryC
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854090.2192883-CDS-H-canaliculatus_M_contigs75266:163..3881696854090.2192883-CDS-H-canaliculatus_M_contigs75266:163..388Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75266 164..388 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75266.1.1prot_H-canaliculatus_M_contigs75266.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75266 164..388 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75266.1.1

>prot_H-canaliculatus_M_contigs75266.1.1 ID=prot_H-canaliculatus_M_contigs75266.1.1|Name=mRNA_H-canaliculatus_M_contigs75266.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=75bp
DGFEHEIRQWVFPERIVHNGREACLTEVINTEHENVKYLPGVKLPDNIVA
EGDLALAVKDATIVIFVLPHQVGY*
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mRNA from alignment at H-canaliculatus_M_contigs75266:164..388-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75266.1.1 ID=mRNA_H-canaliculatus_M_contigs75266.1.1|Name=mRNA_H-canaliculatus_M_contigs75266.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=225bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75266:164..388- (Hapterophycus canaliculatus Oshoro7m male)
GACGGCTTCGAGCACGAGATCCGGCAGTGGGTGTTCCCCGAAAGGATCGT
CCACAACGGCCGGGAGGCGTGCCTGACCGAGGTCATCAACACAGAGCACG
AGAATGTGAAGTACTTGCCTGGCGTCAAGCTCCCCGACAACATCGTCGCC
GAGGGCGACCTAGCGCTGGCCGTCAAAGACGCCACAATCGTCATCTTCGT
GCTGCCCCATCAGGTCGGTTATTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75266:164..388-

>mRNA_H-canaliculatus_M_contigs75266.1.1 ID=mRNA_H-canaliculatus_M_contigs75266.1.1|Name=mRNA_H-canaliculatus_M_contigs75266.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=225bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75266:164..388- (Hapterophycus canaliculatus Oshoro7m male)
GACGGCTTCGAGCACGAGATCCGGCAGTGGGTGTTCCCCGAAAGGATCGT
CCACAACGGCCGGGAGGCGTGCCTGACCGAGGTCATCAACACAGAGCACG
AGAATGTGAAGTACTTGCCTGGCGTCAAGCTCCCCGACAACATCGTCGCC
GAGGGCGACCTAGCGCTGGCCGTCAAAGACGCCACAATCGTCATCTTCGT
GCTGCCCCATCAGGTCGGTTATTGA
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