mRNA_H-canaliculatus_M_contigs75262.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75262.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75262.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs75262.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLB6_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 6.840e-17
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:    4 KNNIPVFCPALTDGSIGDMIYFHKYKRPEFILDISG 111
            KN+IPVFCPALTDGSIGDMIYFHKYKRPEFILDISG
Sbjct:  237 KNDIPVFCPALTDGSIGDMIYFHKYKRPEFILDISG 272
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BLAST of mRNA_H-canaliculatus_M_contigs75262.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYK4_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 3.230e-16
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:    1 HKNNIPVFCPALTDGSIGDMIYFHKYKRPEFILDIS 108
            HKN IPVFCPALTDGSIGDMI+FH YKRPEFILDI+
Sbjct:   35 HKNQIPVFCPALTDGSIGDMIFFHMYKRPEFILDIA 70
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BLAST of mRNA_H-canaliculatus_M_contigs75262.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HQ73_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 5.950e-16
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:    1 HKNNIPVFCPALTDGSIGDMIYFHKYKRPEFILDI 105
            HKNNIPVFCPALTDGS+GDM+YFH YKRPEF +DI
Sbjct:    8 HKNNIPVFCPALTDGSLGDMMYFHSYKRPEFCVDI 42
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BLAST of mRNA_H-canaliculatus_M_contigs75262.1.1 vs.
Match: DHS-like (NAD/FAD-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZK5_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.850e-15
Identity = 32/40 (80.00%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:    4 KNNIPVFCPALTDGSIGDMIYFHKYKRPEFILDISGTKRS 123
            K+ IPVFCPALTDGSIGDMIYFHKYKRPEF+LD++G  +S
Sbjct:  238 KHGIPVFCPALTDGSIGDMIYFHKYKRPEFMLDVTGDIKS 277
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BLAST of mRNA_H-canaliculatus_M_contigs75262.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EA19_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 5.710e-15
Identity = 31/40 (77.50%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:    1 HKNNIPVFCPALTDGSIGDMIYFHKYKRPEFILDISGTKR 120
            HKNNIPVFCPA+TDGSIGDM+YFH YKRP FI+DI+   R
Sbjct:  227 HKNNIPVFCPAITDGSIGDMLYFHSYKRPGFIVDIARDIR 266
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BLAST of mRNA_H-canaliculatus_M_contigs75262.1.1 vs.
Match: Deoxyhypusine (synthase, putative n=7 Tax=Perkinsus TaxID=28000 RepID=C5KKG2_PERM5)

HSP 1 Score: 75.1 bits (183), Expect = 9.130e-15
Identity = 31/40 (77.50%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:    1 HKNNIPVFCPALTDGSIGDMIYFHKYKRPEFILDISGTKR 120
            +KNNIPVFCPA+TDGSIGDMIYFH YKRP FI+DI+   R
Sbjct:  232 YKNNIPVFCPAITDGSIGDMIYFHSYKRPGFIIDIAADIR 271
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BLAST of mRNA_H-canaliculatus_M_contigs75262.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RWM9_9ARCH)

HSP 1 Score: 69.3 bits (168), Expect = 1.080e-14
Identity = 27/35 (77.14%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:    1 HKNNIPVFCPALTDGSIGDMIYFHKYKRPEFILDI 105
            H+N+IPVFCPALTDGS+GDM+YFH YKRPE  +DI
Sbjct:   12 HRNDIPVFCPALTDGSLGDMLYFHSYKRPELQVDI 46
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BLAST of mRNA_H-canaliculatus_M_contigs75262.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9X7B6_PHATR)

HSP 1 Score: 71.2 bits (173), Expect = 1.210e-14
Identity = 30/39 (76.92%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    4 KNNIPVFCPALTDGSIGDMIYFHKYKRPEFILDISGTKR 120
            K+NIPVFCPALTDGSIGDM+YFH YKRP F+LDI+   R
Sbjct:   28 KHNIPVFCPALTDGSIGDMLYFHSYKRPGFLLDINEDIR 66
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BLAST of mRNA_H-canaliculatus_M_contigs75262.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812WM17_SYMMI)

HSP 1 Score: 72.8 bits (177), Expect = 2.720e-14
Identity = 28/40 (70.00%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:    1 HKNNIPVFCPALTDGSIGDMIYFHKYKRPEFILDISGTKR 120
            +KN+IPVFCPA+TDGS+GDM+YFH Y+RPEF++DI G  R
Sbjct:  119 YKNDIPVFCPAITDGSLGDMMYFHSYRRPEFLVDIVGDIR 158
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BLAST of mRNA_H-canaliculatus_M_contigs75262.1.1 vs.
Match: Deoxyhypusine (synthase n=2 Tax=Spironucleus salmonicida TaxID=348837 RepID=V6LHW8_9EUKA)

HSP 1 Score: 73.6 bits (179), Expect = 3.110e-14
Identity = 27/41 (65.85%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:    1 HKNNIPVFCPALTDGSIGDMIYFHKYKRPEFILDISGTKRS 123
            HKNNIP+FCPA+TDGS+GDM+YFH YK+P  +LD+ G  R+
Sbjct:  220 HKNNIPIFCPAITDGSLGDMLYFHSYKKPGLVLDVIGDIRA 260
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75262.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized6.840e-1797.22protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLB6... [more]
Hypothetical3.230e-1688.89protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
Hypothetical5.950e-1685.71protein n=1 Tax=Spumella elongata TaxID=89044 RepI... [more]
DHS-like1.850e-1580.00NAD/FAD-binding domain-containing protein n=1 Tax=... [more]
Hypothetical5.710e-1577.50protein n=1 Tax=Pelagomonas calceolata TaxID=35677... [more]
Deoxyhypusine9.130e-1577.50synthase, putative n=7 Tax=Perkinsus TaxID=28000 R... [more]
Uncharacterized1.080e-1477.14protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A48... [more]
Hypothetical1.210e-1476.92protein (Fragment) n=1 Tax=Phaeodactylum tricornut... [more]
Hypothetical2.720e-1470.00protein n=1 Tax=Symbiodinium microadriaticum TaxID... [more]
Deoxyhypusine3.110e-1465.85synthase n=2 Tax=Spironucleus salmonicida TaxID=34... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75262contigH-canaliculatus_M_contigs75262:160..282 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LLB6
PFAMsDS
Model size123
Max annot lvl2759|Eukaryota
KEGG koko:K00809
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006464,GO:0006518,GO:0006576,GO:0006595,GO:0006807,GO:0008047,GO:0008150,GO:0008152,GO:0008216,GO:0008284,GO:0008612,GO:0009058,GO:0009059,GO:0009308,GO:0009405,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0016043,GO:0016740,GO:0016765,GO:0018193,GO:0018205,GO:0019222,GO:0019538,GO:0019899,GO:0022607,GO:0030234,GO:0032991,GO:0034038,GO:0034641,GO:0034645,GO:0036211,GO:0042127,GO:0042802,GO:0042803,GO:0043043,GO:0043085,GO:0043170,GO:0043412,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044093,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044403,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0046983,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0051094,GO:0051259,GO:0051262,GO:0051290,GO:0051291,GO:0051604,GO:0051704,GO:0060255,GO:0065003,GO:0065007,GO:0065009,GO:0071704,GO:0071840,GO:0090342,GO:0090343,GO:0097164,GO:0098772,GO:1901564,GO:1901566,GO:1901576,GO:1902494
Exons1
Evalue1.12e-17
EggNOG OGsCOG1899@1|root,KOG2924@2759|Eukaryota
EC2.5.1.46
Descriptiondeoxyhypusine synthase activity
Cds size123
COG categoryO
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854090.1810842-CDS-H-canaliculatus_M_contigs75262:159..2821696854090.1810842-CDS-H-canaliculatus_M_contigs75262:159..282Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75262 160..282 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75262.1.1prot_H-canaliculatus_M_contigs75262.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75262 160..282 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75262.1.1

>prot_H-canaliculatus_M_contigs75262.1.1 ID=prot_H-canaliculatus_M_contigs75262.1.1|Name=mRNA_H-canaliculatus_M_contigs75262.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=41bp
HKNNIPVFCPALTDGSIGDMIYFHKYKRPEFILDISGTKRS
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mRNA from alignment at H-canaliculatus_M_contigs75262:160..282-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75262.1.1 ID=mRNA_H-canaliculatus_M_contigs75262.1.1|Name=mRNA_H-canaliculatus_M_contigs75262.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=123bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75262:160..282- (Hapterophycus canaliculatus Oshoro7m male)
CACAAGAACAACATTCCGGTGTTCTGCCCGGCGCTTACGGACGGCTCGAT
CGGGGACATGATCTACTTCCATAAGTACAAGCGGCCAGAGTTTATCCTCG
ACATCTCGGGTACGAAGAGATCG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75262:160..282-

>mRNA_H-canaliculatus_M_contigs75262.1.1 ID=mRNA_H-canaliculatus_M_contigs75262.1.1|Name=mRNA_H-canaliculatus_M_contigs75262.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=123bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75262:160..282- (Hapterophycus canaliculatus Oshoro7m male)
CACAAGAACAACATTCCGGTGTTCTGCCCGGCGCTTACGGACGGCTCGAT
CGGGGACATGATCTACTTCCATAAGTACAAGCGGCCAGAGTTTATCCTCG
ACATCTCGGGTACGAAGAGATCG
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