mRNA_H-canaliculatus_M_contigs75255.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75255.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75255.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs75255.1.1 vs.
Match: Flagellar (associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIR7_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 4.780e-30
Identity = 60/61 (98.36%), Postives = 60/61 (98.36%), Query Frame = 1 
Query:    1 DGLRTRLVFAEIALMRPHILLLDEPTNHASMEMIDSMAHAIKQFQGGVIVISHDFRLLQQV 183
            DGLRTRLVFAEIALMRPHILLLDEPTNHASMEMIDSMA AIKQFQGGVIVISHDFRLLQQV
Sbjct:  387 DGLRTRLVFAEIALMRPHILLLDEPTNHASMEMIDSMARAIKQFQGGVIVISHDFRLLQQV 447
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BLAST of mRNA_H-canaliculatus_M_contigs75255.1.1 vs.
Match: ABC (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9L9_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 9.940e-30
Identity = 60/61 (98.36%), Postives = 60/61 (98.36%), Query Frame = 1 
Query:    1 DGLRTRLVFAEIALMRPHILLLDEPTNHASMEMIDSMAHAIKQFQGGVIVISHDFRLLQQV 183
            DGLRTRLVFAEIALMRPHILLLDEPTNHASMEMIDSMA AIKQFQGGVIVISHDFRLLQQV
Sbjct:  509 DGLRTRLVFAEIALMRPHILLLDEPTNHASMEMIDSMARAIKQFQGGVIVISHDFRLLQQV 569
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BLAST of mRNA_H-canaliculatus_M_contigs75255.1.1 vs.
Match: P-loop (containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA40_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.610e-24
Identity = 51/61 (83.61%), Postives = 56/61 (91.80%), Query Frame = 1 
Query:    1 DGLRTRLVFAEIALMRPHILLLDEPTNHASMEMIDSMAHAIKQFQGGVIVISHDFRLLQQV 183
            DGL+TRLVFAEIAL  PHILLLDEPTNHASMEMIDS+A A KQF+GG+IVISHDFRLL +V
Sbjct:  508 DGLKTRLVFAEIALTNPHILLLDEPTNHASMEMIDSLAEACKQFEGGLIVISHDFRLLTKV 568
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BLAST of mRNA_H-canaliculatus_M_contigs75255.1.1 vs.
Match: Probable (ATP-dependent transporter ycf16 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z7G4_PORPP)

HSP 1 Score: 98.6 bits (244), Expect = 1.790e-22
Identity = 45/61 (73.77%), Postives = 53/61 (86.89%), Query Frame = 1 
Query:    1 DGLRTRLVFAEIALMRPHILLLDEPTNHASMEMIDSMAHAIKQFQGGVIVISHDFRLLQQV 183
            DGL+TRLVFA+IAL +PH+LLLDEPTNH  MEMIDS+A AI  F GGV+++SHDFRLL QV
Sbjct:  519 DGLKTRLVFADIALQKPHVLLLDEPTNHCDMEMIDSLADAINAFDGGVVLVSHDFRLLSQV 579
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BLAST of mRNA_H-canaliculatus_M_contigs75255.1.1 vs.
Match: p-loop (containing nucleoside triphosphate hydrolase protein n=1 Tax=Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638) TaxID=796925 RepID=A0A137PEX8_CONC2)

HSP 1 Score: 97.8 bits (242), Expect = 3.280e-22
Identity = 45/68 (66.18%), Postives = 57/68 (83.82%), Query Frame = 1 
Query:    1 DGLRTRLVFAEIALMRPHILLLDEPTNHASMEMIDSMAHAIKQFQGGVIVISHDFRLLQQVRLTVCFV 204
            DGL++RLVFAEIAL RPHI+LLDEPTNH  ME IDS+A+AI +F GG++++SHDFRL+ QV  T+  V
Sbjct:  495 DGLKSRLVFAEIALSRPHIILLDEPTNHLDMESIDSLANAINEFDGGMVLVSHDFRLISQVAQTIWLV 562
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BLAST of mRNA_H-canaliculatus_M_contigs75255.1.1 vs.
Match: P-loop (containing nucleoside triphosphate hydrolase protein n=6 Tax=Rhizopus TaxID=4842 RepID=A0A2G4T5B9_RHIZD)

HSP 1 Score: 97.4 bits (241), Expect = 4.530e-22
Identity = 43/61 (70.49%), Postives = 55/61 (90.16%), Query Frame = 1 
Query:    1 DGLRTRLVFAEIALMRPHILLLDEPTNHASMEMIDSMAHAIKQFQGGVIVISHDFRLLQQV 183
            DGL++RLVFAE+A++RPHI+LLDEPTNH  ME IDS+A AIK+F GGV+++SHDFRL+ QV
Sbjct:  508 DGLKSRLVFAELAILRPHIILLDEPTNHLDMESIDSLADAIKRFSGGVVLVSHDFRLISQV 568
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BLAST of mRNA_H-canaliculatus_M_contigs75255.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7BTI6_9FUNG)

HSP 1 Score: 97.1 bits (240), Expect = 6.200e-22
Identity = 43/61 (70.49%), Postives = 54/61 (88.52%), Query Frame = 1 
Query:    1 DGLRTRLVFAEIALMRPHILLLDEPTNHASMEMIDSMAHAIKQFQGGVIVISHDFRLLQQV 183
            DGL++RLVFAE+A+MRPHI+LLDEPTNH  ME IDS+A AI +F GGV+++SHDFRL+ QV
Sbjct:  510 DGLKSRLVFAELAVMRPHIILLDEPTNHLDMESIDSLAEAINEFSGGVVLVSHDFRLISQV 570
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BLAST of mRNA_H-canaliculatus_M_contigs75255.1.1 vs.
Match: ABC (transporter domain-containing protein (Fragment) n=1 Tax=Rhizopus stolonifer TaxID=4846 RepID=A0A367KQD0_RHIST)

HSP 1 Score: 96.7 bits (239), Expect = 6.520e-22
Identity = 42/61 (68.85%), Postives = 55/61 (90.16%), Query Frame = 1 
Query:    1 DGLRTRLVFAEIALMRPHILLLDEPTNHASMEMIDSMAHAIKQFQGGVIVISHDFRLLQQV 183
            DGL++RLVFAE+A++RPHI+LLDEPTNH  ME IDS+A AIK+F GGV+++SHDFRL+ Q+
Sbjct:  381 DGLKSRLVFAELAVLRPHIILLDEPTNHLDMESIDSLADAIKRFSGGVVLVSHDFRLISQI 441
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BLAST of mRNA_H-canaliculatus_M_contigs75255.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MB21_9CRYP)

HSP 1 Score: 92.0 bits (227), Expect = 8.060e-22
Identity = 41/61 (67.21%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:    1 DGLRTRLVFAEIALMRPHILLLDEPTNHASMEMIDSMAHAIKQFQGGVIVISHDFRLLQQV 183
            DGL++RLVF EIAL  PH+LLLDEPTNH  ME IDS+A AIK + GG++++SHDFRL++QV
Sbjct:   95 DGLKSRLVFTEIALAGPHVLLLDEPTNHLDMESIDSLAEAIKAYDGGLVLVSHDFRLIEQV 155
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BLAST of mRNA_H-canaliculatus_M_contigs75255.1.1 vs.
Match: p-loop (containing nucleoside triphosphate hydrolase protein n=2 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Y684_9FUNG)

HSP 1 Score: 96.7 bits (239), Expect = 8.390e-22
Identity = 44/61 (72.13%), Postives = 53/61 (86.89%), Query Frame = 1 
Query:    1 DGLRTRLVFAEIALMRPHILLLDEPTNHASMEMIDSMAHAIKQFQGGVIVISHDFRLLQQV 183
            DGL+TRLVFAE+AL +PHI+LLDEPTNH  ME IDS+A AI QF GGV+++SHDFRL+ QV
Sbjct:  495 DGLKTRLVFAELALAQPHIILLDEPTNHLDMESIDSLADAINQFSGGVVLVSHDFRLISQV 555
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75255.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Flagellar4.780e-3098.36associated protein n=1 Tax=Ectocarpus siliculosus ... [more]
ABC9.940e-3098.36protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
P-loop1.610e-2483.61containing nucleoside triphosphate hydrolase prote... [more]
Probable1.790e-2273.77ATP-dependent transporter ycf16 n=1 Tax=Porphyridi... [more]
p-loop3.280e-2266.18containing nucleoside triphosphate hydrolase prote... [more]
P-loop4.530e-2270.49containing nucleoside triphosphate hydrolase prote... [more]
Uncharacterized6.200e-2270.49protein n=1 Tax=Apophysomyces ossiformis TaxID=679... [more]
ABC6.520e-2268.85transporter domain-containing protein (Fragment) n... [more]
Hypothetical8.060e-2267.21protein (Fragment) n=1 Tax=Cryptomonas curvata Tax... [more]
p-loop8.390e-2272.13containing nucleoside triphosphate hydrolase prote... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75255contigH-canaliculatus_M_contigs75255:42..245 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LIR7
Preferred nameARB1
PFAMsABC_tran,ABC_tran_Xtn
Model size204
Max annot lvl2759|Eukaryota
KEGG koko:K06185
Hectar predicted targeting categoryother localisation
GOsGO:0000054,GO:0000056,GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006403,GO:0006405,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0007154,GO:0008104,GO:0008144,GO:0008150,GO:0009267,GO:0009605,GO:0009653,GO:0009987,GO:0009991,GO:0015031,GO:0015833,GO:0015931,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022613,GO:0030554,GO:0030587,GO:0030684,GO:0030687,GO:0031152,GO:0031288,GO:0031503,GO:0031667,GO:0031668,GO:0031669,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0033554,GO:0033750,GO:0034613,GO:0035639,GO:0036094,GO:0042254,GO:0042594,GO:0042624,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044424,GO:0044464,GO:0044764,GO:0045184,GO:0046907,GO:0048856,GO:0050657,GO:0050658,GO:0050896,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051703,GO:0051704,GO:0051716,GO:0070727,GO:0071166,GO:0071426,GO:0071428,GO:0071496,GO:0071702,GO:0071705,GO:0071840,GO:0090702,GO:0097159,GO:0097367,GO:0098630,GO:0098743,GO:0099120,GO:1901265,GO:1901363,GO:1990904
Exons1
Evalue7.84e-31
EggNOG OGsCOG0488@1|root,KOG0927@2759|Eukaryota
DescriptionATPase activity
Cds size204
COG categoryT
BRITEko00000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854090.0630283-CDS-H-canaliculatus_M_contigs75255:41..2451696854090.0630283-CDS-H-canaliculatus_M_contigs75255:41..245Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75255 42..245 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75255.1.1prot_H-canaliculatus_M_contigs75255.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75255 42..245 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75255.1.1

>prot_H-canaliculatus_M_contigs75255.1.1 ID=prot_H-canaliculatus_M_contigs75255.1.1|Name=mRNA_H-canaliculatus_M_contigs75255.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=68bp
DGLRTRLVFAEIALMRPHILLLDEPTNHASMEMIDSMAHAIKQFQGGVIV
ISHDFRLLQQVRLTVCFV
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mRNA from alignment at H-canaliculatus_M_contigs75255:42..245+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75255.1.1 ID=mRNA_H-canaliculatus_M_contigs75255.1.1|Name=mRNA_H-canaliculatus_M_contigs75255.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=204bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75255:42..245+ (Hapterophycus canaliculatus Oshoro7m male)
GACGGGTTGCGGACGCGTCTGGTGTTCGCCGAGATCGCGTTGATGAGGCC
GCACATCCTGCTTCTCGACGAGCCAACCAACCACGCGAGTATGGAGATGA
TCGACTCCATGGCGCACGCCATCAAGCAGTTCCAGGGAGGGGTGATCGTC
ATCAGCCACGACTTCCGCCTCCTGCAGCAGGTGCGCCTGACCGTCTGTTT
CGTT
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75255:42..245+

>mRNA_H-canaliculatus_M_contigs75255.1.1 ID=mRNA_H-canaliculatus_M_contigs75255.1.1|Name=mRNA_H-canaliculatus_M_contigs75255.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=204bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75255:42..245+ (Hapterophycus canaliculatus Oshoro7m male)
GACGGGTTGCGGACGCGTCTGGTGTTCGCCGAGATCGCGTTGATGAGGCC
GCACATCCTGCTTCTCGACGAGCCAACCAACCACGCGAGTATGGAGATGA
TCGACTCCATGGCGCACGCCATCAAGCAGTTCCAGGGAGGGGTGATCGTC
ATCAGCCACGACTTCCGCCTCCTGCAGCAGGTGCGCCTGACCGTCTGTTT
CGTT
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