mRNA_H-canaliculatus_M_contigs75252.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75252.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75252.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75252.1.1 vs.
Match: Similar (to Calcium-independent phospholipase A2-gamma, C terminal part n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL86_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 7.440e-34
Identity = 59/66 (89.39%), Postives = 60/66 (90.91%), Query Frame = 1 
Query:   31 QAQYSSADWEAILEDILGDRRMIDTMTRPNNPKVVICSTIMNVAPLEMMLWRNYGYRSDQEPVYKA 228
            QAQYSS DWEAILEDILGDRRMIDTMT PNNPKVVICSTIMNV PLEMMLWRNYGYR +QEP YK 
Sbjct:  103 QAQYSSTDWEAILEDILGDRRMIDTMTLPNNPKVVICSTIMNVDPLEMMLWRNYGYRPEQEPPYKG 168
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75252.1.1 vs.
Match: PNPLA (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSL4_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 1.470e-32
Identity = 59/66 (89.39%), Postives = 60/66 (90.91%), Query Frame = 1 
Query:   31 QAQYSSADWEAILEDILGDRRMIDTMTRPNNPKVVICSTIMNVAPLEMMLWRNYGYRSDQEPVYKA 228
            QAQYSS DWEAILEDILGDRRMIDTMT PNNPKVVICSTIMNV PLEMMLWRNYGYR +QEP YK 
Sbjct: 1336 QAQYSSTDWEAILEDILGDRRMIDTMTLPNNPKVVICSTIMNVDPLEMMLWRNYGYRPEQEPPYKG 1401
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75252.1.1 vs.
Match: PNPLA (domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F2X6_VITBC)

HSP 1 Score: 65.5 bits (158), Expect = 1.200e-10
Identity = 31/66 (46.97%), Postives = 39/66 (59.09%), Query Frame = 1 
Query:    1 PLSMPRTGSCQAQYSSADWEAILEDILGDRRMIDTMTRPNNPKVVICSTIMNVAPLEMMLWRNYGY 198
            P+S  R    QA Y    WE ILE+ LGD RMIDT   P+ PK    ST+++  P  ++LWRNY Y
Sbjct: 1500 PISGARLVVKQAYYDETAWELILENTLGDIRMIDTAADPDVPKTFCLSTMVSANPSSLILWRNYNY 1565
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75252.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Similar7.440e-3489.39to Calcium-independent phospholipase A2-gamma, C t... [more]
PNPLA1.470e-3289.39domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
PNPLA1.200e-1046.97domain-containing protein n=1 Tax=Vitrella brassic... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75252contigH-canaliculatus_M_contigs75252:48..278 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LL86
Preferred namePNPLA8
PFAMsPatatin
Model size231
Max annot lvl2759|Eukaryota
KEGG koko:K16815
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0001516,GO:0001676,GO:0003674,GO:0003824,GO:0004620,GO:0004623,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005778,GO:0005783,GO:0005789,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006636,GO:0006644,GO:0006650,GO:0006690,GO:0006692,GO:0006693,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0008144,GO:0008150,GO:0008152,GO:0008219,GO:0008610,GO:0009056,GO:0009058,GO:0009395,GO:0009987,GO:0010876,GO:0012505,GO:0015711,GO:0015718,GO:0015849,GO:0015908,GO:0015909,GO:0016020,GO:0016042,GO:0016053,GO:0016298,GO:0016787,GO:0016788,GO:0017076,GO:0019369,GO:0019637,GO:0019752,GO:0030554,GO:0031090,GO:0031903,GO:0031984,GO:0032309,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0033036,GO:0033559,GO:0034638,GO:0035639,GO:0036094,GO:0036151,GO:0036152,GO:0042175,GO:0042579,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043651,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0046337,GO:0046338,GO:0046394,GO:0046434,GO:0046456,GO:0046457,GO:0046470,GO:0046475,GO:0046486,GO:0046503,GO:0046717,GO:0046903,GO:0046942,GO:0047499,GO:0050482,GO:0051179,GO:0051234,GO:0052689,GO:0071702,GO:0071704,GO:0071715,GO:0072330,GO:0097159,GO:0097164,GO:0097367,GO:0098588,GO:0098805,GO:0098827,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901568,GO:1901570,GO:1901571,GO:1901575,GO:1901576,GO:1903963
Exons1
Evalue1.08e-34
EggNOG OGsKOG4231@1|root,KOG4231@2759|Eukaryota
Descriptionphosphatidylethanolamine catabolic process
Cds size222
COG categoryU
BRITEko00000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854090.0147114-UTR-H-canaliculatus_M_contigs75252:47..561696854090.0147114-UTR-H-canaliculatus_M_contigs75252:47..56Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs75252 48..56 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854090.0272794-CDS-H-canaliculatus_M_contigs75252:56..2781696854090.0272794-CDS-H-canaliculatus_M_contigs75252:56..278Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75252 57..278 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75252.1.1prot_H-canaliculatus_M_contigs75252.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75252 57..278 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75252.1.1

>prot_H-canaliculatus_M_contigs75252.1.1 ID=prot_H-canaliculatus_M_contigs75252.1.1|Name=mRNA_H-canaliculatus_M_contigs75252.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=74bp
MPRTGSCQAQYSSADWEAILEDILGDRRMIDTMTRPNNPKVVICSTIMNV
APLEMMLWRNYGYRSDQEPVYKAS
back to top

mRNA from alignment at H-canaliculatus_M_contigs75252:48..278+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75252.1.1 ID=mRNA_H-canaliculatus_M_contigs75252.1.1|Name=mRNA_H-canaliculatus_M_contigs75252.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=231bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75252:48..278+ (Hapterophycus canaliculatus Oshoro7m male)
CCTCTTTCCATGCCGCGCACCGGGTCGTGCCAGGCGCAATACTCGAGCGC
CGATTGGGAGGCGATCCTGGAGGACATCCTGGGCGACCGGCGCATGATCG
ACACCATGACTCGCCCCAACAACCCCAAGGTGGTGATCTGCTCGACCATC
ATGAACGTGGCTCCGCTGGAGATGATGCTCTGGAGGAACTACGGTTACCG
CTCGGACCAGGAGCCGGTGTACAAGGCAAGC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75252:48..278+

>mRNA_H-canaliculatus_M_contigs75252.1.1 ID=mRNA_H-canaliculatus_M_contigs75252.1.1|Name=mRNA_H-canaliculatus_M_contigs75252.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=222bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75252:48..278+ (Hapterophycus canaliculatus Oshoro7m male)
ATGCCGCGCACCGGGTCGTGCCAGGCGCAATACTCGAGCGCCGATTGGGA
GGCGATCCTGGAGGACATCCTGGGCGACCGGCGCATGATCGACACCATGA
CTCGCCCCAACAACCCCAAGGTGGTGATCTGCTCGACCATCATGAACGTG
GCTCCGCTGGAGATGATGCTCTGGAGGAACTACGGTTACCGCTCGGACCA
GGAGCCGGTGTACAAGGCAAGC
back to top