mRNA_H-canaliculatus_M_contigs7524.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7524.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7524.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7524.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRK3_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 6.050e-39
Identity = 69/96 (71.88%), Postives = 78/96 (81.25%), Query Frame = 1
Query:    1 YQSSKVLTIAGEGFNPAGTRFRFGNTLVEGKNYTVSVASVSATFTLVDGSKWRQNTAALPGPLVLLSADYGDGFVPLGATTAKAGRKVATIFADPK 288
            YQSSKVLTIAG+GFN   TRFRFGN L+EGKN+T  V   SATFTL +GSKWRQ+  A P PL+LL+AD GDGFVPLGAT AK GRKVATI+ DP+
Sbjct:  181 YQSSKVLTIAGQGFNTGNTRFRFGNGLLEGKNFTQIVTPESATFTLEEGSKWRQDAPAWPAPLILLAADAGDGFVPLGATIAKTGRKVATIYEDPR 276          
BLAST of mRNA_H-canaliculatus_M_contigs7524.1.1 vs.
Match: Trypsin (domain protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRJ9_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 5.030e-38
Identity = 71/96 (73.96%), Postives = 80/96 (83.33%), Query Frame = 1
Query:    1 YQSSKVLTIAGEGFNPAGTRFRFGNTLVEGKNYTVSVASVSATFTLVDGSKWRQNTAALPGPLVLLSADYGDGFVPLGATTAKAGRKVATIFADPK 288
            YQSSKVLTIAG+GFN + TRFRF N+LVEGKN+T  V   SATF L +GSKWRQ+  + P PLVLL+AD GDGFVPLGATTAKAGRKVATIF DP+
Sbjct:  181 YQSSKVLTIAGQGFNSSYTRFRFANSLVEGKNFTQVVTPESATFALEEGSKWRQDAPSWPAPLVLLAADAGDGFVPLGATTAKAGRKVATIFEDPR 276          
BLAST of mRNA_H-canaliculatus_M_contigs7524.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDJ8_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 3.490e-35
Identity = 65/96 (67.71%), Postives = 78/96 (81.25%), Query Frame = 1
Query:    1 YQSSKVLTIAGEGFNPAGTRFRFGNTLVEGKNYTVSVASVSATFTLVDGSKWRQNTAALPGPLVLLSADYGDGFVPLGATTAKAGRKVATIFADPK 288
            YQSSKVLTIAG+GFN + T+FRF  ++VEG+NYT  V   SATFTL +GSKWRQ+  + P PLVLL+A+ GDGFVPLGAT  KAGRKVATI+ DP+
Sbjct:  159 YQSSKVLTIAGQGFNASYTKFRFAASIVEGRNYTQVVTPESATFTLEEGSKWRQDAPSWPTPLVLLAANAGDGFVPLGAT--KAGRKVATIYEDPR 252          
BLAST of mRNA_H-canaliculatus_M_contigs7524.1.1 vs.
Match: Peptidase (S1 and S6, chymotrypsin/Hap n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLV2_9STRA)

HSP 1 Score: 101 bits (251), Expect = 6.880e-23
Identity = 56/97 (57.73%), Postives = 62/97 (63.92%), Query Frame = 1
Query:    1 YQSSKVLTIAGEGFNPAGTRFRFGNTLVEG-KNYTVS-VASVSATFTLVDGSKWRQNTAALPGPLVLLSADYGDGFVPLGATTAKAGRKVATIFADP 285
            YQS+  L I G GFNP GT+ RF N L  G  NYT S V     T  L  GSKWR N   LPG LVLL+AD G GFV LGAT  K+GRKVAT++ DP
Sbjct:  236 YQSTPTLEIDGVGFNPDGTQLRFANGLRGGGANYTASTVTPTRMTLDLAPGSKWRGNVDNLPGALVLLAADAGAGFVALGATAVKSGRKVATVYEDP 332          
BLAST of mRNA_H-canaliculatus_M_contigs7524.1.1 vs.
Match: Peptidase (S1 and S6, chymotrypsin/Hap n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG95_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 2.390e-22
Identity = 55/97 (56.70%), Postives = 67/97 (69.07%), Query Frame = 1
Query:    1 YQSSKVLTIAGEGFNPAGTRFRFGNTLVEG-KNYTVSVASVSA-TFTLVDGSKWRQNTAALPGPLVLLSADYGDGFVPLGATTAKAGRKVATIFADP 285
            YQSSK   I+G GF   GT+ RF N L  G  N+T++ +     T  L +GSKWR+N +ALPG LVLL+AD GDG+VPLG T AKAG KVAT+F DP
Sbjct:  232 YQSSKSFQISGSGFVD-GTKVRFANALRGGGTNFTITDSQPELLTLELAEGSKWRKNPSALPGALVLLAADSGDGWVPLGPTQAKAGSKVATVFEDP 327          
BLAST of mRNA_H-canaliculatus_M_contigs7524.1.1 vs.
Match: Hypothetical (protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A1T6_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 4.450e-22
Identity = 55/99 (55.56%), Postives = 66/99 (66.67%), Query Frame = 1
Query:    1 YQSSKVLTIAGEGFNPAG--TRFRFGNTLV-EGKNYTVSVASVSA-TFTLVDGSKWRQNTAALPGPLVLLSADYGDGFVPLGATTAKAGRKVATIFADP 285
            YQS+  L + G GFN      R R+GN L   G NYTV+ A+ +A T +L+ GSKWR N A LPGPL LL+ D G G VP+GAT AK GR VATI+ADP
Sbjct:  238 YQSAPELKVIGHGFNETAPMNRLRWGNKLQGRGVNYTVTSATTNALTLSLLAGSKWRPNAANLPGPLTLLAVDAGAGLVPVGATDAKKGRVVATIYADP 336          
BLAST of mRNA_H-canaliculatus_M_contigs7524.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XT65_HETAK)

HSP 1 Score: 97.4 bits (241), Expect = 1.540e-21
Identity = 51/97 (52.58%), Postives = 62/97 (63.92%), Query Frame = 1
Query:    1 YQSSKVLTIAGEGFNPAGTRFRFGNTLV-EGKNYTVSVASV-SATFTLVDGSKWRQNTAALPGPLVLLSADYGDGFVPLGATTAKAGRKVATIFADP 285
            YQS+  + I G GFNP GT+ RF N L   G NYT   A+  S T  L  G KWR+N   LPGPL +L+AD G G+V LGAT AK GR +AT++ DP
Sbjct:  274 YQSTPTVMITGSGFNPEGTKLRFYNNLRGSGANYTTIAATPNSLTLQLNPGVKWRENVRQLPGPLTVLAADGGAGWVALGATAAKRGRTIATVYEDP 370          
BLAST of mRNA_H-canaliculatus_M_contigs7524.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XT52_HETAK)

HSP 1 Score: 97.4 bits (241), Expect = 1.550e-21
Identity = 51/97 (52.58%), Postives = 62/97 (63.92%), Query Frame = 1
Query:    1 YQSSKVLTIAGEGFNPAGTRFRFGNTLV-EGKNYTVSVASV-SATFTLVDGSKWRQNTAALPGPLVLLSADYGDGFVPLGATTAKAGRKVATIFADP 285
            YQS+  + I G GFNP GT+ RF N L   G NYT   A+  S T  L  G KWR+N   LPGPL +L+AD G G+V LGAT AK GR +AT++ DP
Sbjct:  274 YQSTPTVMITGSGFNPEGTKLRFYNNLRGSGANYTTIAATPNSLTLQLNPGVKWRENVRQLPGPLTVLAADGGAGWVALGATAAKRGRTIATVYEDP 370          
BLAST of mRNA_H-canaliculatus_M_contigs7524.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM60_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.010e-20
Identity = 51/93 (54.84%), Postives = 59/93 (63.44%), Query Frame = 1
Query:    1 YQSSKVLTIAGEGFNPAGTRFRFGNTLVEG-KNYTVS-VASVSATFTLVDGSKWRQNTAALPGPLVLLSADYGDGFVPLGATTAKAGRKVATI 273
            YQS+  L + G GFNP GT  RF N L  G  NYT S +     T  L  GS+WR N   LPG LVLL+AD GDG+V LGAT AKAGRK+A +
Sbjct:  223 YQSTPTLELDGAGFNPKGTSLRFANALRGGGANYTASAITPTHMTLELAPGSRWRGNADNLPGALVLLAADAGDGYVALGATAAKAGRKIAMV 315          
BLAST of mRNA_H-canaliculatus_M_contigs7524.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y596_AURAN)

HSP 1 Score: 79.0 bits (193), Expect = 4.680e-15
Identity = 48/105 (45.71%), Postives = 59/105 (56.19%), Query Frame = 1
Query:    1 YQSSKVLTIAGEGF-------NPAGTRFRFGNTLV-EGKNYTVSVASVSAT-FTLVDGSKWRQNTAALPGPLVLLSADYGDGFVPLGATTAKAGRKVATIFADPK 288
            YQ++  L I G GF       N    R R+GN L+  G NYTVS    +     L  GS WR+N A LP PL LL+AD G G V +GAT A+ G +VAT+F  PK
Sbjct:   90 YQNAPSLVIKGSGFAHVNEVANFGSPRLRWGNGLLGRGVNYTVSTFDDNKVELVLKPGSVWRRNGANLPAPLTLLAADVGSGLVAMGATEARKGVRVATVFEAPK 194          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7524.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
Uncharacterized6.050e-3971.88protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Trypsin5.030e-3873.96domain protein n=2 Tax=Ectocarpus siliculosus TaxI... [more]
Uncharacterized3.490e-3567.71protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Peptidase6.880e-2357.73S1 and S6, chymotrypsin/Hap n=1 Tax=Tribonema minu... [more]
Peptidase2.390e-2256.70S1 and S6, chymotrypsin/Hap n=1 Tax=Ectocarpus sil... [more]
Hypothetical4.450e-2255.56protein n=2 Tax=Pelagomonas calceolata TaxID=35677... [more]
Hypothetical1.540e-2152.58protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
Hypothetical1.550e-2152.58protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
Uncharacterized1.010e-2054.84protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Uncharacterized4.680e-1545.71protein n=1 Tax=Aureococcus anophagefferens TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7524contigH-canaliculatus_M_contigs7524:4784..5264 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LG95
PFAMsTrypsin_2
Model size291
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.91e-23
EggNOG OGs2D060@1|root,2SCYI@2759|Eukaryota
Cds size291
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854089.972446-CDS-H-canaliculatus_M_contigs7524:4783..49121696854089.972446-CDS-H-canaliculatus_M_contigs7524:4783..4912Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7524 4784..4912 -
1696854089.984365-CDS-H-canaliculatus_M_contigs7524:5102..52641696854089.984365-CDS-H-canaliculatus_M_contigs7524:5102..5264Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7524 5103..5264 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7524.1.1prot_H-canaliculatus_M_contigs7524.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7524 4784..5264 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7524.1.1

>prot_H-canaliculatus_M_contigs7524.1.1 ID=prot_H-canaliculatus_M_contigs7524.1.1|Name=mRNA_H-canaliculatus_M_contigs7524.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=97bp
YQSSKVLTIAGEGFNPAGTRFRFGNTLVEGKNYTVSVASVSATFTLVDGS
KWRQNTAALPGPLVLLSADYGDGFVPLGATTAKAGRKVATIFADPK*
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mRNA from alignment at H-canaliculatus_M_contigs7524:4784..5264-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7524.1.1 ID=mRNA_H-canaliculatus_M_contigs7524.1.1|Name=mRNA_H-canaliculatus_M_contigs7524.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=481bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7524:4784..5264- (Hapterophycus canaliculatus Oshoro7m male)
TACCAATCGAGCAAGGTCCTCACCATCGCCGGAGAAGGCTTCAACCCCGC CGGCACAAGGTTCCGGTTCGGCAACACTCTTGTCGAGGGGAAGAACTACA CCGTGTCTGTCGCGAGCGTCTCGGCGACGTTCACGCTTGTGGACGGCAGC AAGTGGAGACAGGTAGGCAGGCCTCGGACATTGCGCCTGTCCCGCCCGTT CACCGGGGGTTGTGGGTGCGGCGTGTGCTCGGCCGAAGTTTCGTGAGAGG AATGCTTGAGTGTTTACGCGGCAATGCTTGTGCACACGGCGTCCAACTAA ATCGGGGTGCACGGATGAATGGATCGTCTGTTCCGTTGCTTCGGGTTTCC AGAACACGGCGGCGTTGCCGGGGCCTCTGGTGCTGCTGTCGGCCGACTAC GGGGACGGTTTCGTGCCTTTGGGAGCCACGACGGCGAAGGCAGGACGGAA AGTGGCCACCATTTTCGCGGACCCCAAGTAA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7524:4784..5264-

>mRNA_H-canaliculatus_M_contigs7524.1.1 ID=mRNA_H-canaliculatus_M_contigs7524.1.1|Name=mRNA_H-canaliculatus_M_contigs7524.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=291bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7524:4784..5264- (Hapterophycus canaliculatus Oshoro7m male)
TACCAATCGAGCAAGGTCCTCACCATCGCCGGAGAAGGCTTCAACCCCGC
CGGCACAAGGTTCCGGTTCGGCAACACTCTTGTCGAGGGGAAGAACTACA
CCGTGTCTGTCGCGAGCGTCTCGGCGACGTTCACGCTTGTGGACGGCAGC
AAGTGGAGACAGAACACGGCGGCGTTGCCGGGGCCTCTGGTGCTGCTGTC
GGCCGACTACGGGGACGGTTTCGTGCCTTTGGGAGCCACGACGGCGAAGG
CAGGACGGAAAGTGGCCACCATTTTCGCGGACCCCAAGTAA
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