mRNA_H-canaliculatus_M_contigs75231.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75231.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75231.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs75231.1.1 vs.
Match: Dicer-like (3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW2_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 7.380e-23
Identity = 45/52 (86.54%), Postives = 50/52 (96.15%), Query Frame = 1 
Query:   10 VGHGVRKPDFEAADKSQRLL-GVPAPALRHSFAQHLIRGERVMDPDAGVRGR 162
            VGHGVRKPD++AADKSQRLL GVPAPAL+HSFAQHL+RGE+VMDPDAGVR R
Sbjct:  955 VGHGVRKPDYDAADKSQRLLLGVPAPALKHSFAQHLVRGEKVMDPDAGVRSR 1006
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BLAST of mRNA_H-canaliculatus_M_contigs75231.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQM7_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 7.390e-23
Identity = 45/52 (86.54%), Postives = 50/52 (96.15%), Query Frame = 1 
Query:   10 VGHGVRKPDFEAADKSQRLL-GVPAPALRHSFAQHLIRGERVMDPDAGVRGR 162
            VGHGVRKPD++AADKSQRLL GVPAPAL+HSFAQHL+RGE+VMDPDAGVR R
Sbjct: 1374 VGHGVRKPDYDAADKSQRLLLGVPAPALKHSFAQHLVRGEKVMDPDAGVRSR 1425
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BLAST of mRNA_H-canaliculatus_M_contigs75231.1.1 vs.
Match: Putative (dicer (Fragment) n=1 Tax=Fucus serratus TaxID=87148 RepID=A0A2S1PRV6_FUCSE)

HSP 1 Score: 79.0 bits (193), Expect = 8.050e-16
Identity = 38/52 (73.08%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:   10 VGHGVRKPDFEAADKSQRLL-GVPAPALRHSFAQHLIRGERVMDPDAGVRGR 162
            V  G+ + D++AA KSQRLL GVP PALRHSF QHL+RGERVMDPDAGVR R
Sbjct:  661 VVRGIHEHDYKAACKSQRLLLGVPVPALRHSFVQHLMRGERVMDPDAGVRRR 712
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75231.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Dicer-like7.380e-2386.543 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=... [more]
Uncharacterized7.390e-2386.54protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Putative8.050e-1673.08dicer (Fragment) n=1 Tax=Fucus serratus TaxID=8714... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75231contigH-canaliculatus_M_contigs75231:286..447 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FZW2
PFAMsDEAD,Dicer_dimer,Helicase_C
Model size162
Max annot lvl2759|Eukaryota
KEGG koko:K11592
KEGG Pathwayko05206,map05206
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.21e-23
EggNOG OGsCOG0571@1|root,KOG0701@2759|Eukaryota
Descriptionribonuclease III activity
Cds size162
COG categoryK
BRITEko00000,ko00001,ko01000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854089.942585-CDS-H-canaliculatus_M_contigs75231:285..4471696854089.942585-CDS-H-canaliculatus_M_contigs75231:285..447Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75231 286..447 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75231.1.1prot_H-canaliculatus_M_contigs75231.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75231 286..447 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75231.1.1

>prot_H-canaliculatus_M_contigs75231.1.1 ID=prot_H-canaliculatus_M_contigs75231.1.1|Name=mRNA_H-canaliculatus_M_contigs75231.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=54bp
SRKVGHGVRKPDFEAADKSQRLLGVPAPALRHSFAQHLIRGERVMDPDAG
VRGR
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mRNA from alignment at H-canaliculatus_M_contigs75231:286..447-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75231.1.1 ID=mRNA_H-canaliculatus_M_contigs75231.1.1|Name=mRNA_H-canaliculatus_M_contigs75231.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=162bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75231:286..447- (Hapterophycus canaliculatus Oshoro7m male)
TCCCGCAAAGTCGGGCACGGCGTCCGGAAGCCGGACTTCGAGGCCGCGGA
CAAGTCCCAGCGTTTGCTGGGCGTCCCGGCTCCCGCCCTTCGCCACTCCT
TCGCACAGCACCTCATCCGCGGGGAGAGGGTCATGGATCCCGACGCGGGC
GTTCGGGGAAGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75231:286..447-

>mRNA_H-canaliculatus_M_contigs75231.1.1 ID=mRNA_H-canaliculatus_M_contigs75231.1.1|Name=mRNA_H-canaliculatus_M_contigs75231.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=162bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75231:286..447- (Hapterophycus canaliculatus Oshoro7m male)
TCCCGCAAAGTCGGGCACGGCGTCCGGAAGCCGGACTTCGAGGCCGCGGA
CAAGTCCCAGCGTTTGCTGGGCGTCCCGGCTCCCGCCCTTCGCCACTCCT
TCGCACAGCACCTCATCCGCGGGGAGAGGGTCATGGATCCCGACGCGGGC
GTTCGGGGAAGA
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