mRNA_H-canaliculatus_M_contigs7523.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7523.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7523.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7523.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXG7_9PHAE)

HSP 1 Score: 328 bits (840), Expect = 1.380e-108
Identity = 179/266 (67.29%), Postives = 201/266 (75.56%), Query Frame = 1 
Query:    1 RRVGSLSPLAAGGIDGIDMDEFDPLEAGPDPDAILLQGEPELLRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGA--SDEMAMAGIDPKKKKAA-RVRIDPLMPRGGVAPNEWLEMGDLVDGVRGILVICHTGLPKDKKRAAEIFDAVKERYGDVIHTFEWWDDDEELTEDDREEAGTFEVWLEGPTLVHYHERADGKLDLNDEQLEKILDDLECRVVDEAILGLYVNEDIQFRLPGFTAAEQRSKQFP 789
            RR  SL PL  GG+D  +MD+ DPLE GPDPD ILLQGEPELLRQ  XXXXX                            XXX     AG    +DE+AMA + PK+KK A +VR+DPLMPRGGVAPNEWL+M +L +GVRGILV+CHTGLPKDKKRA E+ +AVKERYG VIHT EWWDDDEELT+DDRE+AGTFEVWLEGPT+VHYHERADGKLDL+DEQL+KILDDLE RV+DEAILG Y+NED QFRLPGFT  EQR KQFP
Sbjct:  105 RRCRSLQPLGLGGMD--EMDDIDPLEGGPDPDEILLQGEPELLRQQQXXXXXEAELAAAEAATVAAGKGPTKAELAEAAVXXXMASKTAGEGVGADEVAMAALGPKRKKRAEKVRVDPLMPRGGVAPNEWLDMANLAEGVRGILVVCHTGLPKDKKRATEVMNAVKERYGHVIHTHEWWDDDEELTDDDREDAGTFEVWLEGPTVVHYHERADGKLDLDDEQLDKILDDLEERVMDEAILGQYINEDFQFRLPGFTVPEQRFKQFP 368
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BLAST of mRNA_H-canaliculatus_M_contigs7523.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5D7_ECTSI)

HSP 1 Score: 321 bits (823), Expect = 6.190e-108
Identity = 177/251 (70.52%), Postives = 195/251 (77.69%), Query Frame = 1 
Query:   52 DMDEFDPLEAGPDPDAILLQGEPELLRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA--GGASDEMAMAGIDPKKKKAA-RVRIDPLMPRGGVAPNEWLEMGDLVDGVRGILVICHTGLPKDKKRAAEIFDAVKERYGDVIHTFEWWDDDEELTEDDREEAGTFEVWLEGPTLVHYHERADGKLDLNDEQLEKILDDLECRVVDEAILGLYVNEDIQFRLPGFTAAEQRSKQFPVL 795
            +M++ DPLEAGPDPD ILLQGEPELLRQ                                XXXXXXXXXXX   GG +DE AMA + PK+KK   + RIDPLMPRGGVAPNEWL+M DL +GVRGILV+CHTGLPKDKKRAAEI +AVKERYG VIHT EWWDDDEELT+DDRE+AGTFEVWLEGPT+VHYHERADGKLDL+DEQL+KILDDLE RV+DEAILG Y+NED QFRLPGFT  EQR KQFPVL
Sbjct:    3 EMEDMDPLEAGPDPDEILLQGEPELLRQQQEEEDYEVELAAAEAATVAAGKAPTKAELAEXXXXXXXXXXXXREGGGADEAAMAALGPKRKKRVEKARIDPLMPRGGVAPNEWLDMADLAEGVRGILVVCHTGLPKDKKRAAEIMNAVKERYGHVIHTHEWWDDDEELTDDDREDAGTFEVWLEGPTIVHYHERADGKLDLDDEQLDKILDDLEERVMDEAILGQYINEDFQFRLPGFTVPEQRFKQFPVL 253
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7523.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.380e-10867.29protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized6.190e-10870.52protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7523contigH-canaliculatus_M_contigs7523:1407..4161 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Model size798
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_008690.1
Cds size798
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854089.874418-CDS-H-canaliculatus_M_contigs7523:1406..16041696854089.874418-CDS-H-canaliculatus_M_contigs7523:1406..1604Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7523 1407..1604 +
1696854089.8894033-CDS-H-canaliculatus_M_contigs7523:1779..20041696854089.8894033-CDS-H-canaliculatus_M_contigs7523:1779..2004Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7523 1780..2004 +
1696854089.9018815-CDS-H-canaliculatus_M_contigs7523:3252..33421696854089.9018815-CDS-H-canaliculatus_M_contigs7523:3252..3342Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7523 3253..3342 +
1696854089.9130287-CDS-H-canaliculatus_M_contigs7523:3876..41611696854089.9130287-CDS-H-canaliculatus_M_contigs7523:3876..4161Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7523 3877..4161 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7523.1.1prot_H-canaliculatus_M_contigs7523.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7523 1407..4161 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7523.1.1

>prot_H-canaliculatus_M_contigs7523.1.1 ID=prot_H-canaliculatus_M_contigs7523.1.1|Name=mRNA_H-canaliculatus_M_contigs7523.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=266bp
RRVGSLSPLAAGGIDGIDMDEFDPLEAGPDPDAILLQGEPELLRQQQDEE
DYEAELAAAAAAATEKAPTKKEIAEAAVAAAVQMGGSEAGGASDEMAMAG
IDPKKKKAARVRIDPLMPRGGVAPNEWLEMGDLVDGVRGILVICHTGLPK
DKKRAAEIFDAVKERYGDVIHTFEWWDDDEELTEDDREEAGTFEVWLEGP
TLVHYHERADGKLDLNDEQLEKILDDLECRVVDEAILGLYVNEDIQFRLP
GFTAAEQRSKQFPVL*
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mRNA from alignment at H-canaliculatus_M_contigs7523:1407..4161+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7523.1.1 ID=mRNA_H-canaliculatus_M_contigs7523.1.1|Name=mRNA_H-canaliculatus_M_contigs7523.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=2755bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7523:1407..4161+ (Hapterophycus canaliculatus Oshoro7m male)
CGCCGTGTTGGATCCTTGTCGCCTCTGGCCGCCGGAGGCATAGACGGCAT
CGACATGGATGAATTCGACCCTCTCGAGGCTGGGCCCGACCCGGACGCGA
TCTTGCTGCAGGGCGAACCAGAGCTGCTGAGGCAGCAGCAGGACGAGGAG
GACTACGAGGCGGAGCTGGCGGCGGCGGCTGCGGCGGCGACCGAGAAGGT
GCATCGAAATTCAAGTGATGTTGAATAGGCAAAAGCAGTCGCAGCAGCAG
TGCCGGAACAAGAACAACAACAATAACAACAATTTCTGTCATGGACGTCG
TGTCATGGCCTCAAATTTTCGTCTTCTGCCCAAATGATCTGATAATCTCC
CACGAATACGGGAAAAAACAAAGGCGCCCACGAAGAAAGAGATAGCAGAG
GCGGCAGTGGCCGCAGCGGTCCAGATGGGCGGCAGCGAGGCCGGCGGGGC
GTCCGACGAGATGGCGATGGCAGGGATCGACCCCAAGAAGAAGAAGGCCG
CCAGGGTTAGGATCGACCCGCTCATGCCCAGGGGGGGCGTGGCGCCGAAC
GAATGGCTCGAGATGGGGGATCTCGTCGACGGCGTCCGCGGAATACTGGT
GAGGCTCGACAGCACTGCGATCTTCAAGAAAAACACGACAACACCGTAGG
AACACCTCCTGAGGTGTACGTCATGCCAGGCGTAGCTCGAGGCCTCCGTT
GAGTTTCAAACAGTGATGGTTCCTTGTGTATGGTTGGGACAAAAGCAGGA
AGTTTATTTGTTTCAAATGAAGAGTCAACGACACCGAAGGAAAATTCCCT
TCTGGGTCACGCCTCCGTAGGCGTCCCAGGAGACTCGTGTTGAATCCCTT
ACAAGGCGTGGTGCGTTGGATGGGAAAATAGTGTCAACATTTTTGTCTCG
TGTTTTGATCTAGTTGACAACTATTGCCGGAAATCAGTCTTGCACTACAT
GGTTCGAAATTTTGGGGGGAATGCGAAGGCGGGGTCGCACGGAAGGACTC
CTACTCCTGAAGCCGACACATTCCACTCCCCCTACCCATGAAAACGTCCT
CTGCGCATGAGAACAGTGAAAATACCGCGGAGGACCGCCTGGAGTGTTCG
CTTATTTGCGATCTCACCCGCGGCCGGCTGCGTGCAAGGGCCAAAGCACG
AAGAAAAAAGTTTACCTGCCGCGAGTAAGAGAGTCGCGCGCTCGTTTACC
CGACCCGACGACAAGCCAGCGGATCCACCTGGTTGATTCGTGCGTTGCGC
AGGCACTACCCGACAATTCGTGAAGTTTGTTCGGACCCCCCTTCGGACCA
CAGCCGCTTCCCCGCGGAGCCTACTGCTGTGCACGGGAAAAAGACTGCGT
TGCACGTGTACCACCGTCCTGCACCCTGTACATAGGGATGTTTAGTTTCA
GCACGTGTCGTCGTCTTTGGGACCCAGGAATAAAGTACGAGACGGACGGT
GCTTCCCAGCTTGCACGCGGAATCGCACTTCTCTCGGGCTTACCTTTTCT
GAAGAAAAATAGTTGACAGTTCAGAAGGCAAACCCTCTGAGGCAGGGCTC
TACTCGTAGGAGGATTTATGTTGGATTTTCCGCCGTGAGGAATCAGTAGG
CCGACCGGGAGGAAAGGATGAGAGAAGTTAATAATCGTGGCCCTGGTTTC
CTGCTGACACTTTCTTGTGAGAGATAATACCATGTATATACCGAAGGATT
CGCCCTTTCTATCCCCGAAGCCGCAACCCGATCCCATTCCAAATCGAAGC
GCGCCGCTGCTTGCAGCAGTCCGTACCCGATTGATTGAAACCGAACCAAA
ATATCCTTGTTCGCTAAACTTTCCGCCGCCGTTACATACAATCCAGGTTA
TTTGTCACACGGGTTTGCCGAAGGACAAGAAGAGAGCGGCTGAAATCTTT
GACGCGGTGAAGGAGCGCTACGGTGATGTCATTCACGTGAGTTGTCGCGC
TGTCGTTGCGAAATCTGTGACCGTACGCATACGGTACGGCAAAAGGTGTA
ACGCGATGCGGTGTGGTGCGTTGCGATGCAGTACATGGTTTTGCAAAGGG
ACATGTAAACGCCATTTTTGGCAGTCTGGAGTCTTGAGATGCGCGCGCAG
CGGAGAGAAGGAGACGAGGCGAAAAGCTAGCCGGTGACAACGAACCGCGA
GATTGGTCGGGCGGGACATGAATATTGCTTTCGCATTTGGTCATGGTCCA
TGTTTTCGTGTCGTTTGACGTCACCTAAGACTAAACGTGGTGGAAATGAG
GACACGGATAGGGGTATGGACGGAATTTTTGTTTCTGCGGTGGGAGCCAT
CGAGCGAATTCCGCTATCTTTGAAGTGATATGTTGCCAAAACAGTGTGTG
GGCGGCACGATAGTTTCCCCCTGTTGTCGCAGCTCGGAAGCCGCAGCTAT
CATACACAAAAGAGATACAACAACCGAATTGATAATGACGACGACATCGC
AACAACCCCAAACACAACAGACGTTCGAGTGGTGGGACGACGACGAGGAG
CTGACCGAGGATGACCGCGAGGAGGCCGGCACCTTCGAAGTCTGGCTCGA
GGGCCCCACCTTGGTGCACTACCACGAGAGGGCCGACGGCAAGCTGGACC
TCAACGACGAGCAGCTGGAGAAGATCCTCGACGACCTGGAGTGCCGGGTT
GTGGACGAGGCCATCCTCGGCCTGTACGTCAACGAGGACATCCAGTTCAG
GCTGCCGGGGTTCACGGCCGCCGAGCAGAGGTCCAAGCAGTTCCCGGTCC
TTTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7523:1407..4161+

>mRNA_H-canaliculatus_M_contigs7523.1.1 ID=mRNA_H-canaliculatus_M_contigs7523.1.1|Name=mRNA_H-canaliculatus_M_contigs7523.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=798bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7523:1407..4161+ (Hapterophycus canaliculatus Oshoro7m male)
CGCCGTGTTGGATCCTTGTCGCCTCTGGCCGCCGGAGGCATAGACGGCAT
CGACATGGATGAATTCGACCCTCTCGAGGCTGGGCCCGACCCGGACGCGA
TCTTGCTGCAGGGCGAACCAGAGCTGCTGAGGCAGCAGCAGGACGAGGAG
GACTACGAGGCGGAGCTGGCGGCGGCGGCTGCGGCGGCGACCGAGAAGGC
GCCCACGAAGAAAGAGATAGCAGAGGCGGCAGTGGCCGCAGCGGTCCAGA
TGGGCGGCAGCGAGGCCGGCGGGGCGTCCGACGAGATGGCGATGGCAGGG
ATCGACCCCAAGAAGAAGAAGGCCGCCAGGGTTAGGATCGACCCGCTCAT
GCCCAGGGGGGGCGTGGCGCCGAACGAATGGCTCGAGATGGGGGATCTCG
TCGACGGCGTCCGCGGAATACTGGTTATTTGTCACACGGGTTTGCCGAAG
GACAAGAAGAGAGCGGCTGAAATCTTTGACGCGGTGAAGGAGCGCTACGG
TGATGTCATTCACACGTTCGAGTGGTGGGACGACGACGAGGAGCTGACCG
AGGATGACCGCGAGGAGGCCGGCACCTTCGAAGTCTGGCTCGAGGGCCCC
ACCTTGGTGCACTACCACGAGAGGGCCGACGGCAAGCTGGACCTCAACGA
CGAGCAGCTGGAGAAGATCCTCGACGACCTGGAGTGCCGGGTTGTGGACG
AGGCCATCCTCGGCCTGTACGTCAACGAGGACATCCAGTTCAGGCTGCCG
GGGTTCACGGCCGCCGAGCAGAGGTCCAAGCAGTTCCCGGTCCTTTAG
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