mRNA_H-canaliculatus_M_contigs7522.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7522.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7522.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7522.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JI36_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 3.270e-51
Identity = 78/109 (71.56%), Postives = 90/109 (82.57%), Query Frame = 1
Query:    1 WCPHCFQSRGPAAVRERGEEFTDSAELDMYGGGAWPHLFSYQRGELLPNGNYFEPEGISLRHGICGDPEQTKSEGSNLYGKENSNYAVLETFQEGQIMETKVVFSTYHW 327
            WCPHCFQSRGP+AVRERGEE T+ A L MYG G WPHLFSY+R E+  NGNY+EPE IS+RHGICGDPEQTK+EG+NLYG+ENS Y V   + EG I+E K+V STYHW
Sbjct:   34 WCPHCFQSRGPSAVRERGEENTEEAVLAMYGRGEWPHLFSYERNEVHGNGNYYEPEEISVRHGICGDPEQTKAEGTNLYGQENSKYPVHGKYSEGGIIEIKIVVSTYHW 142          
BLAST of mRNA_H-canaliculatus_M_contigs7522.1.1 vs.
Match: EsV-1-166 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D7_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 1.240e-34
Identity = 54/109 (49.54%), Postives = 75/109 (68.81%), Query Frame = 1
Query:    1 WCPHCFQSRGPAAVRERGEEFTDSAELDMYGGGAWPHLFSYQRGELLPNGNYFEPEGISLRHGICGDPEQTKSEGSNLYGKENSNYAVLETFQEGQIMETKVVFSTYHW 327
            +CP C+ +RGP  V+ERG   TD A L  YG G WP  ++Y++GE+  NGNY E + I+ RHGICGDPEQ + EG+N Y   N ++ +L T+QEGQ++E K+  + YHW
Sbjct:   16 YCPSCYNARGPTYVKERGMVNTDPAVLAEYGDGEWPLRWAYEKGEMAENGNYLEKDEIAKRHGICGDPEQNEEEGANFYSTPNGDWPILNTYQEGQVLEIKLGMTAYHW 124          
BLAST of mRNA_H-canaliculatus_M_contigs7522.1.1 vs.
Match: EsV-1-166 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM93_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 1.740e-34
Identity = 63/109 (57.80%), Postives = 71/109 (65.14%), Query Frame = 1
Query:    1 WCPHCFQSRGPAAVRERGEEFTDSAELDMYGGGAWPHLFSYQRGELLPNGNYFEPEGISLRHGICGDPEQTKSEGSNLYGKENSNYAVLETFQEGQIMETKVVFSTYHW 327
            +CPHCFQSRGPAAVR RG            G   WPH      GE   NGNY E E ++ RHGICGDPEQT +E SN YG+ENSNY V ET+ EG I+E K+V STYHW
Sbjct:   56 YCPHCFQSRGPAAVRARG------------GDKPWPHF----NGERAENGNYIESEEVARRHGICGDPEQTAAESSNKYGQENSNYPVRETYAEGGILEVKIVVSTYHW 148          
BLAST of mRNA_H-canaliculatus_M_contigs7522.1.1 vs.
Match: EsV-1-166 (n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD67_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 1.790e-34
Identity = 62/109 (56.88%), Postives = 73/109 (66.97%), Query Frame = 1
Query:    1 WCPHCFQSRGPAAVRERGEEFTDSAELDMYGGGAWPHLFSYQRGELLPNGNYFEPEGISLRHGICGDPEQTKSEGSNLYGKENSNYAVLETFQEGQIMETKVVFSTYHW 327
            +CPHCFQSRGPAA+R RG            G   WPH      GE   NGNY E + ++ RHG+CGDPEQT +EGSN YG+ENSNY VLET+ EG I+E K+V STYHW
Sbjct:   53 YCPHCFQSRGPAAIRARG------------GDQPWPHF----NGERAKNGNYIESDEVAQRHGVCGDPEQTAAEGSNKYGQENSNYPVLETYAEGGILEVKIVVSTYHW 145          
BLAST of mRNA_H-canaliculatus_M_contigs7522.1.1 vs.
Match: CBM1 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD35_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 9.260e-34
Identity = 61/109 (55.96%), Postives = 72/109 (66.06%), Query Frame = 1
Query:    1 WCPHCFQSRGPAAVRERGEEFTDSAELDMYGGGAWPHLFSYQRGELLPNGNYFEPEGISLRHGICGDPEQTKSEGSNLYGKENSNYAVLETFQEGQIMETKVVFSTYHW 327
            +CPHCFQSRGPAA+R RG            G   WPH      GE   NGNY E + ++ RHG+CGDPEQT +EGSN YG+ENS Y VLET+ EG I+E K+V STYHW
Sbjct:   24 YCPHCFQSRGPAAIRARG------------GDQPWPHF----NGERAENGNYIESDEVAQRHGVCGDPEQTAAEGSNKYGQENSKYPVLETYAEGGILEVKIVVSTYHW 116          
BLAST of mRNA_H-canaliculatus_M_contigs7522.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY6_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 6.150e-33
Identity = 64/109 (58.72%), Postives = 72/109 (66.06%), Query Frame = 1
Query:    1 WCPHCFQSRGPAAVRERGEEFTDSAELDMYGGGAWPHLFSYQRGELLPNGNYFEPEGISLRHGICGDPEQTKSEGSNLYGKENSNYAVLETFQEGQIMETKVVFSTYHW 327
            +CPHCFQSRG AAVR RG            G   WPH      G+   NGNY E E ++ RHGICGDPEQT +EGSNLYG ENSNY VLET+ EG I+E K+V STYHW
Sbjct:   55 YCPHCFQSRGAAAVRARG------------GDQPWPHF----NGDRAANGNYIESEEVAQRHGICGDPEQTAAEGSNLYGLENSNYPVLETYAEGGILEFKMVVSTYHW 147          
BLAST of mRNA_H-canaliculatus_M_contigs7522.1.1 vs.
Match: EsV-1-166 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM92_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 1.430e-32
Identity = 63/109 (57.80%), Postives = 71/109 (65.14%), Query Frame = 1
Query:    1 WCPHCFQSRGPAAVRERGEEFTDSAELDMYGGGAWPHLFSYQRGELLPNGNYFEPEGISLRHGICGDPEQTKSEGSNLYGKENSNYAVLETFQEGQIMETKVVFSTYHW 327
            +CPHCFQSRGPAA+R RG            G   WPH      GE   NGNY E E ++ RHGICGDPEQT +E SN YG ENSNY VLET+ EG I+E K+V STYHW
Sbjct:   55 YCPHCFQSRGPAAIRARG------------GDKPWPHF----NGERAENGNYIESEEVAQRHGICGDPEQTAAEDSNKYGLENSNYPVLETYAEGGILEFKMVVSTYHW 147          
BLAST of mRNA_H-canaliculatus_M_contigs7522.1.1 vs.
Match: EsV-1-166 (n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMF4_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 2.960e-30
Identity = 58/109 (53.21%), Postives = 71/109 (65.14%), Query Frame = 1
Query:    1 WCPHCFQSRGPAAVRERGEEFTDSAELDMYGGGAWPHLFSYQRGELLPNGNYFEPEGISLRHGICGDPEQTKSEGSNLYGKENSNYAVLETFQEGQIMETKVVFSTYHW 327
            +CPHC+QSRGPAA+RER             G   WPH   YQ G    NGNY E + ++ RHGICGDPEQT +EG N YG+EN NY VL T+ EG ++E K++ STYHW
Sbjct:   60 FCPHCYQSRGPAAIRERS------------GDKPWPH---YQ-GARAANGNYLESDEVAQRHGICGDPEQTAAEGDNKYGRENYNYPVLGTYAEGGVLEVKILVSTYHW 152          
BLAST of mRNA_H-canaliculatus_M_contigs7522.1.1 vs.
Match: EsV-1-166 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G892_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 7.190e-28
Identity = 48/106 (45.28%), Postives = 68/106 (64.15%), Query Frame = 1
Query:    4 CPHCFQSRGPAAVRERGEEFTDSAELDMYGGGAWPHLFSYQRGELLPNGNYFEPEGISLRHGICGDPEQTKSEGSNLYGKENSNYAVLETFQEGQIMETKVVFSTY 321
            CP C  S GP  V+E+G  +T+   L  YG G WP L +Y +GE+  NGN++E + IS RHGICGDP+Q   E +N Y    S+++ LET +EG +++ KVV + Y
Sbjct:   50 CPGCLDSGGPVYVKEKGIGYTNGGLLAEYGDGEWPLLAAYNKGEMCDNGNFYERDEISARHGICGDPKQFALESTNAYSSSLSDWSALETLKEGGVLDIKVVVAEY 155          
BLAST of mRNA_H-canaliculatus_M_contigs7522.1.1 vs.
Match: EsV-1-166 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZR0_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 1.580e-26
Identity = 49/109 (44.95%), Postives = 69/109 (63.30%), Query Frame = 1
Query:    4 CPHCFQSRGPAAVRERGEEFTDSAELDMYGGGA-WPHLFSYQRGELLPNGNYFEPEGISLRHGICGDPEQTKSEGSNLYGKENSNYAVLETFQEGQIMETKVVFSTYHW 327
            CPHC+ + G A  + RG E  D   L+ +GGG+ +P  F      L PNGNY EP  +++RHG+CGDPEQTK  GSN Y   +SN+  L T++ GQ++E  +V + +HW
Sbjct:   47 CPHCYNAHGSAGTKARGIELMDPDVLESHGGGSEFPLAFV----PLAPNGNYLEPNEVAVRHGVCGDPEQTKPAGSNTYSTASSNWEPLATYRSGQVLEFVIVMNAHHW 151          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7522.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
Uncharacterized3.270e-5171.56protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5... [more]
EsV-1-1661.240e-3449.54n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
EsV-1-1661.740e-3457.80n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8... [more]
EsV-1-1661.790e-3456.88n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8... [more]
CBM19.260e-3455.96domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized6.150e-3358.72protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
EsV-1-1661.430e-3257.80n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8... [more]
EsV-1-1662.960e-3053.21n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMF4_ECTSI[more]
EsV-1-1667.190e-2845.28n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
EsV-1-1661.580e-2644.95n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7522contigH-canaliculatus_M_contigs7522:261..1386 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FSZ8
PFAMsCBM_1,LPMO_10
Model size327
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.2e-52
EggNOG OGs2CZUJ@1|root,2SBQR@2759|Eukaryota
Ec32 ortholog descriptionCellulose/chitin-binding protein
Ec32 orthologEc-24_004240.1
DescriptionFungal-type cellulose-binding domain
Cds size327
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854089.8210537-CDS-H-canaliculatus_M_contigs7522:260..3771696854089.8210537-CDS-H-canaliculatus_M_contigs7522:260..377Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7522 261..377 -
1696854089.8354301-CDS-H-canaliculatus_M_contigs7522:740..8651696854089.8354301-CDS-H-canaliculatus_M_contigs7522:740..865Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7522 741..865 -
1696854089.8464875-CDS-H-canaliculatus_M_contigs7522:1301..13861696854089.8464875-CDS-H-canaliculatus_M_contigs7522:1301..1386Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7522 1302..1386 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7522.1.1prot_H-canaliculatus_M_contigs7522.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7522 261..1386 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7522.1.1

>prot_H-canaliculatus_M_contigs7522.1.1 ID=prot_H-canaliculatus_M_contigs7522.1.1|Name=mRNA_H-canaliculatus_M_contigs7522.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=109bp
WCPHCFQSRGPAAVRERGEEFTDSAELDMYGGGAWPHLFSYQRGELLPNG
NYFEPEGISLRHGICGDPEQTKSEGSNLYGKENSNYAVLETFQEGQIMET
KVVFSTYHW
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mRNA from alignment at H-canaliculatus_M_contigs7522:261..1386-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7522.1.1 ID=mRNA_H-canaliculatus_M_contigs7522.1.1|Name=mRNA_H-canaliculatus_M_contigs7522.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1126bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7522:261..1386- (Hapterophycus canaliculatus Oshoro7m male)
TGGTGCCCTCACTGCTTCCAGAGCCGGGGACCTGCCGCTGTGCGGGAACG CGGCGAAGAGTTCACTGATTCAGCCGAGCTCGACAGTGAGACAATTTGAA TGTACTGTATTAGTTCCCGTTCAGAAAGGAGGCGTTTGGCTCGATAAACA TGATGTCTCCGAACGCTTGTAGAAGCACGGATATACAGATTCTTTTGGCC ACACTTGACAGCATGCAGTAACCACCGGTGAGCCAGTAGAAAGCGCGTTT CCAACAGTTTGTTCTCGTGCCAGCTGCTGCGCAGCATCATCGTTCTTCTG GTGCTGGTGTGAATTGCCGTGCTGAGGTATCGGTTTCGAGGGTGTGCATG TACCCATCGCGACCGTTTCTACGTCGTACACCACAACAGCTGTGACCACA TTGCCCTTCTCGGCCGTTGTTCTAACTACGTCTACCATCGCCGATTTTTG CGCGACTGCGCATCGTCCCCGCTGCTGCTTTCCCTCTTTCTTCTTCCCGC TACGGTATCACCATGTGGCAGTGTACGGCGGCGGAGCCTGGCCTCATCTA TTTTCCTACCAGAGAGGCGAGCTGCTTCCCAACGGAAACTACTTCGAGCC GGAGGGCATCTCACTCAGGCACGGGATCTGCGGAGACCCCGAGCAGGTCG GTTGCAAACTCTGCCTTGTTCTGGGGGATGTCGACATCCTTTCTCTGACC TTGTCGATACCTTCCGATCCTGAGTTGCTCGTTACTTTTTCGTCTTGTAT CATCTCTCCAAGGCGCATCTGGAAAGGCTCAATCTACCTACTTCTTCGAA GCTCGTCTGAGCTGAATCGCTTCCCACCTACTGATCCACCCCCCTCTGCG CACTGATGAATCGCCTCCACACGCTGGTGCATGCACGCTTACTTGCATGT CTGCCTGCTTGTTTCTCTGTCGATTTTGCGCGAGTGTTGCTTGGGTGTGC ACACCCCGATGCGCCTCTCACGGCCGTTTACGCTTGCCCCTCTCCCGCGA CTGTTCCAGACCAAGTCCGAGGGATCCAATCTCTACGGGAAGGAGAACAG CAACTACGCCGTGCTCGAGACGTTCCAAGAGGGTCAAATCATGGAGACCA AGGTCGTATTCTCGACGTACCACTGG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7522:261..1386-

>mRNA_H-canaliculatus_M_contigs7522.1.1 ID=mRNA_H-canaliculatus_M_contigs7522.1.1|Name=mRNA_H-canaliculatus_M_contigs7522.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=327bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7522:261..1386- (Hapterophycus canaliculatus Oshoro7m male)
TGGTGCCCTCACTGCTTCCAGAGCCGGGGACCTGCCGCTGTGCGGGAACG
CGGCGAAGAGTTCACTGATTCAGCCGAGCTCGACATGTACGGCGGCGGAG
CCTGGCCTCATCTATTTTCCTACCAGAGAGGCGAGCTGCTTCCCAACGGA
AACTACTTCGAGCCGGAGGGCATCTCACTCAGGCACGGGATCTGCGGAGA
CCCCGAGCAGACCAAGTCCGAGGGATCCAATCTCTACGGGAAGGAGAACA
GCAACTACGCCGTGCTCGAGACGTTCCAAGAGGGTCAAATCATGGAGACC
AAGGTCGTATTCTCGACGTACCACTGG
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