mRNA_H-canaliculatus_M_contigs7522.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
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Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7522.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JI36_9PHAE) HSP 1 Score: 177 bits (450), Expect = 3.270e-51 Identity = 78/109 (71.56%), Postives = 90/109 (82.57%), Query Frame = 1
Query: 1 WCPHCFQSRGPAAVRERGEEFTDSAELDMYGGGAWPHLFSYQRGELLPNGNYFEPEGISLRHGICGDPEQTKSEGSNLYGKENSNYAVLETFQEGQIMETKVVFSTYHW 327
WCPHCFQSRGP+AVRERGEE T+ A L MYG G WPHLFSY+R E+ NGNY+EPE IS+RHGICGDPEQTK+EG+NLYG+ENS Y V + EG I+E K+V STYHW
Sbjct: 34 WCPHCFQSRGPSAVRERGEENTEEAVLAMYGRGEWPHLFSYERNEVHGNGNYYEPEEISVRHGICGDPEQTKAEGTNLYGQENSKYPVHGKYSEGGIIEIKIVVSTYHW 142
BLAST of mRNA_H-canaliculatus_M_contigs7522.1.1 vs.
Match: EsV-1-166 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D7_ECTSI) HSP 1 Score: 131 bits (330), Expect = 1.240e-34 Identity = 54/109 (49.54%), Postives = 75/109 (68.81%), Query Frame = 1
Query: 1 WCPHCFQSRGPAAVRERGEEFTDSAELDMYGGGAWPHLFSYQRGELLPNGNYFEPEGISLRHGICGDPEQTKSEGSNLYGKENSNYAVLETFQEGQIMETKVVFSTYHW 327
+CP C+ +RGP V+ERG TD A L YG G WP ++Y++GE+ NGNY E + I+ RHGICGDPEQ + EG+N Y N ++ +L T+QEGQ++E K+ + YHW
Sbjct: 16 YCPSCYNARGPTYVKERGMVNTDPAVLAEYGDGEWPLRWAYEKGEMAENGNYLEKDEIAKRHGICGDPEQNEEEGANFYSTPNGDWPILNTYQEGQVLEIKLGMTAYHW 124
BLAST of mRNA_H-canaliculatus_M_contigs7522.1.1 vs.
Match: EsV-1-166 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM93_ECTSI) HSP 1 Score: 130 bits (327), Expect = 1.740e-34 Identity = 63/109 (57.80%), Postives = 71/109 (65.14%), Query Frame = 1
Query: 1 WCPHCFQSRGPAAVRERGEEFTDSAELDMYGGGAWPHLFSYQRGELLPNGNYFEPEGISLRHGICGDPEQTKSEGSNLYGKENSNYAVLETFQEGQIMETKVVFSTYHW 327
+CPHCFQSRGPAAVR RG G WPH GE NGNY E E ++ RHGICGDPEQT +E SN YG+ENSNY V ET+ EG I+E K+V STYHW
Sbjct: 56 YCPHCFQSRGPAAVRARG------------GDKPWPHF----NGERAENGNYIESEEVARRHGICGDPEQTAAESSNKYGQENSNYPVRETYAEGGILEVKIVVSTYHW 148
BLAST of mRNA_H-canaliculatus_M_contigs7522.1.1 vs.
Match: EsV-1-166 (n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD67_ECTSI) HSP 1 Score: 133 bits (334), Expect = 1.790e-34 Identity = 62/109 (56.88%), Postives = 73/109 (66.97%), Query Frame = 1
Query: 1 WCPHCFQSRGPAAVRERGEEFTDSAELDMYGGGAWPHLFSYQRGELLPNGNYFEPEGISLRHGICGDPEQTKSEGSNLYGKENSNYAVLETFQEGQIMETKVVFSTYHW 327
+CPHCFQSRGPAA+R RG G WPH GE NGNY E + ++ RHG+CGDPEQT +EGSN YG+ENSNY VLET+ EG I+E K+V STYHW
Sbjct: 53 YCPHCFQSRGPAAIRARG------------GDQPWPHF----NGERAKNGNYIESDEVAQRHGVCGDPEQTAAEGSNKYGQENSNYPVLETYAEGGILEVKIVVSTYHW 145
BLAST of mRNA_H-canaliculatus_M_contigs7522.1.1 vs.
Match: CBM1 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD35_9PHAE) HSP 1 Score: 130 bits (328), Expect = 9.260e-34 Identity = 61/109 (55.96%), Postives = 72/109 (66.06%), Query Frame = 1
Query: 1 WCPHCFQSRGPAAVRERGEEFTDSAELDMYGGGAWPHLFSYQRGELLPNGNYFEPEGISLRHGICGDPEQTKSEGSNLYGKENSNYAVLETFQEGQIMETKVVFSTYHW 327
+CPHCFQSRGPAA+R RG G WPH GE NGNY E + ++ RHG+CGDPEQT +EGSN YG+ENS Y VLET+ EG I+E K+V STYHW
Sbjct: 24 YCPHCFQSRGPAAIRARG------------GDQPWPHF----NGERAENGNYIESDEVAQRHGVCGDPEQTAAEGSNKYGQENSKYPVLETYAEGGILEVKIVVSTYHW 116
BLAST of mRNA_H-canaliculatus_M_contigs7522.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY6_9PHAE) HSP 1 Score: 130 bits (327), Expect = 6.150e-33 Identity = 64/109 (58.72%), Postives = 72/109 (66.06%), Query Frame = 1
Query: 1 WCPHCFQSRGPAAVRERGEEFTDSAELDMYGGGAWPHLFSYQRGELLPNGNYFEPEGISLRHGICGDPEQTKSEGSNLYGKENSNYAVLETFQEGQIMETKVVFSTYHW 327
+CPHCFQSRG AAVR RG G WPH G+ NGNY E E ++ RHGICGDPEQT +EGSNLYG ENSNY VLET+ EG I+E K+V STYHW
Sbjct: 55 YCPHCFQSRGAAAVRARG------------GDQPWPHF----NGDRAANGNYIESEEVAQRHGICGDPEQTAAEGSNLYGLENSNYPVLETYAEGGILEFKMVVSTYHW 147
BLAST of mRNA_H-canaliculatus_M_contigs7522.1.1 vs.
Match: EsV-1-166 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM92_ECTSI) HSP 1 Score: 129 bits (324), Expect = 1.430e-32 Identity = 63/109 (57.80%), Postives = 71/109 (65.14%), Query Frame = 1
Query: 1 WCPHCFQSRGPAAVRERGEEFTDSAELDMYGGGAWPHLFSYQRGELLPNGNYFEPEGISLRHGICGDPEQTKSEGSNLYGKENSNYAVLETFQEGQIMETKVVFSTYHW 327
+CPHCFQSRGPAA+R RG G WPH GE NGNY E E ++ RHGICGDPEQT +E SN YG ENSNY VLET+ EG I+E K+V STYHW
Sbjct: 55 YCPHCFQSRGPAAIRARG------------GDKPWPHF----NGERAENGNYIESEEVAQRHGICGDPEQTAAEDSNKYGLENSNYPVLETYAEGGILEFKMVVSTYHW 147
BLAST of mRNA_H-canaliculatus_M_contigs7522.1.1 vs.
Match: EsV-1-166 (n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMF4_ECTSI) HSP 1 Score: 122 bits (305), Expect = 2.960e-30 Identity = 58/109 (53.21%), Postives = 71/109 (65.14%), Query Frame = 1
Query: 1 WCPHCFQSRGPAAVRERGEEFTDSAELDMYGGGAWPHLFSYQRGELLPNGNYFEPEGISLRHGICGDPEQTKSEGSNLYGKENSNYAVLETFQEGQIMETKVVFSTYHW 327
+CPHC+QSRGPAA+RER G WPH YQ G NGNY E + ++ RHGICGDPEQT +EG N YG+EN NY VL T+ EG ++E K++ STYHW
Sbjct: 60 FCPHCYQSRGPAAIRERS------------GDKPWPH---YQ-GARAANGNYLESDEVAQRHGICGDPEQTAAEGDNKYGRENYNYPVLGTYAEGGVLEVKILVSTYHW 152
BLAST of mRNA_H-canaliculatus_M_contigs7522.1.1 vs.
Match: EsV-1-166 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G892_ECTSI) HSP 1 Score: 109 bits (272), Expect = 7.190e-28 Identity = 48/106 (45.28%), Postives = 68/106 (64.15%), Query Frame = 1
Query: 4 CPHCFQSRGPAAVRERGEEFTDSAELDMYGGGAWPHLFSYQRGELLPNGNYFEPEGISLRHGICGDPEQTKSEGSNLYGKENSNYAVLETFQEGQIMETKVVFSTY 321
CP C S GP V+E+G +T+ L YG G WP L +Y +GE+ NGN++E + IS RHGICGDP+Q E +N Y S+++ LET +EG +++ KVV + Y
Sbjct: 50 CPGCLDSGGPVYVKEKGIGYTNGGLLAEYGDGEWPLLAAYNKGEMCDNGNFYERDEISARHGICGDPKQFALESTNAYSSSLSDWSALETLKEGGVLDIKVVVAEY 155
BLAST of mRNA_H-canaliculatus_M_contigs7522.1.1 vs.
Match: EsV-1-166 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZR0_ECTSI) HSP 1 Score: 110 bits (276), Expect = 1.580e-26 Identity = 49/109 (44.95%), Postives = 69/109 (63.30%), Query Frame = 1
Query: 4 CPHCFQSRGPAAVRERGEEFTDSAELDMYGGGA-WPHLFSYQRGELLPNGNYFEPEGISLRHGICGDPEQTKSEGSNLYGKENSNYAVLETFQEGQIMETKVVFSTYHW 327
CPHC+ + G A + RG E D L+ +GGG+ +P F L PNGNY EP +++RHG+CGDPEQTK GSN Y +SN+ L T++ GQ++E +V + +HW
Sbjct: 47 CPHCYNAHGSAGTKARGIELMDPDVLESHGGGSEFPLAFV----PLAPNGNYLEPNEVAVRHGVCGDPEQTKPAGSNTYSTASSNWEPLATYRSGQVLEFVIVMNAHHW 151 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7522.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs7522.1.1 >prot_H-canaliculatus_M_contigs7522.1.1 ID=prot_H-canaliculatus_M_contigs7522.1.1|Name=mRNA_H-canaliculatus_M_contigs7522.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=109bp WCPHCFQSRGPAAVRERGEEFTDSAELDMYGGGAWPHLFSYQRGELLPNGback to top mRNA from alignment at H-canaliculatus_M_contigs7522:261..1386- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs7522.1.1 ID=mRNA_H-canaliculatus_M_contigs7522.1.1|Name=mRNA_H-canaliculatus_M_contigs7522.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1126bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7522:261..1386- (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7522:261..1386- >mRNA_H-canaliculatus_M_contigs7522.1.1 ID=mRNA_H-canaliculatus_M_contigs7522.1.1|Name=mRNA_H-canaliculatus_M_contigs7522.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=327bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7522:261..1386- (Hapterophycus canaliculatus Oshoro7m male)back to top |