mRNA_H-canaliculatus_M_contigs7521.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7521.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7521.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7521.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKB3_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 1.080e-31
Identity = 65/109 (59.63%), Postives = 81/109 (74.31%), Query Frame = 1 
Query:    1 RGRREG-CIGTWLKVAAMG-LAVFATGAAASDSAGGRAPPPFAPGKYGGFRNFVDEMRVQMATLKSKLGGKDSQLFTEMNSCPPKPLQVFEYGPSRPTWARNPDKYKYQ 321
            +GRR G C+GTWLKVAA+G LA FA GAAASD    R+       KYGG R   D +R+Q+A L+S++GG++SQL  E+NS PPKPL+VFEYGPSR  W R+P+KYKYQ
Sbjct:   13 KGRRGGGCVGTWLKVAAVGVLAFFAAGAAASD----RSMRVGGMEKYGGLREISDNIRLQLAALRSQVGGEESQLSKEVNSVPPKPLEVFEYGPSRQAWMRDPEKYKYQ 117
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7521.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.080e-3159.63protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKB3... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7521contigH-canaliculatus_M_contigs7521:306..5058 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Model size321
Hectar predicted targeting categorysignal peptide
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-05_005560.1
Cds size321
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854089.7529774-CDS-H-canaliculatus_M_contigs7521:305..3681696854089.7529774-CDS-H-canaliculatus_M_contigs7521:305..368Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7521 306..368 -
1696854089.7643206-CDS-H-canaliculatus_M_contigs7521:640..7961696854089.7643206-CDS-H-canaliculatus_M_contigs7521:640..796Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7521 641..796 -
1696854089.7759688-CDS-H-canaliculatus_M_contigs7521:4956..50581696854089.7759688-CDS-H-canaliculatus_M_contigs7521:4956..5058Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7521 4957..5058 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7521.1.1prot_H-canaliculatus_M_contigs7521.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7521 306..5058 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7521.1.1

>prot_H-canaliculatus_M_contigs7521.1.1 ID=prot_H-canaliculatus_M_contigs7521.1.1|Name=mRNA_H-canaliculatus_M_contigs7521.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=107bp
RGRREGCIGTWLKVAAMGLAVFATGAAASDSAGGRAPPPFAPGKYGGFRN
FVDEMRVQMATLKSKLGGKDSQLFTEMNSCPPKPLQVFEYGPSRPTWARN
PDKYKYQ
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mRNA from alignment at H-canaliculatus_M_contigs7521:306..5058-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7521.1.1 ID=mRNA_H-canaliculatus_M_contigs7521.1.1|Name=mRNA_H-canaliculatus_M_contigs7521.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=4753bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7521:306..5058- (Hapterophycus canaliculatus Oshoro7m male)
AGGGGGAGGAGAGAAGGGTGCATTGGCACGTGGCTGAAGGTCGCTGCGAT
GGGCTTGGCTGTCTTTGCTACCGGAGCTGCTGCGTCTGATTCCGCCGGAG
GGGTGAGTAATGGATACGGAGAAACAGACGATTCGCTTTGGTGTCTCTTG
CTCTGATCTACTGGAACGGTATCGCCGGAGTACAGCAGTGAGAGCATTGA
ACTTGAACGCCATGTTAGCATGTGTGCGGCGGTTAGGCATCGAGTTCATC
CGTGTGGACCCCTCATGTGTTCAGCATCCAGAGGTGCTCTCCAAGCCGAA
TGTGCTGGGGGAAGCGAGTTGGATGGCTTGTGCTTCGTGTCCATGTGGTG
GATACACAGGCTAGCCTTGTTCTTACCATCCACAATGATGTAGGACGCTC
TGGGGGGCTGTCTATTACCTTTTACACGGTACGATCTCTCTCGCAGCGAT
CTACTCGTTAGGAAAACTTACAGCATCGGGATCTCCTCCTAACCCCAACT
CTGAAGCATTTTTGCCTAGACTGCTGTTGCGCACAGCGTGAGGGGCACCT
CTAAACCTACATAGGCTCAGAATTACGTGTACGAGTCGATCGAAAAGTAC
TTGTTCCCAGGGACTACCAACGCAGAGGCTGGAAAGTTCAAGTTTCGTCT
TGGAGTGTCCCTTTTCCCTATTCGCCATGTTCCTGTGGTTTCACGTGTTG
AATGGGTGTGCTGCTGGGGGTGTTGTGGCTCCTCGTAAGCGCGCATCTTT
CAGCAATCAGCACCCAGCGTTGAAAAGCACACCCAAGGTCTCGTGGCACG
TATCCAAAGCTTGGCCCTGAATCCAACGGCAGAGTTCGCTGCCCCCAGCC
CCTCGAAACAATCAGCCGAAGCACAACCCCGAGAAGATTCACAAGGAATG
GAGGGAGCAGAGAGAGATGGGACGGGGGGAAGGCGGGAGACAGGGAGAGA
GAGAGCGAAAGCCCTCCGCCTGTACCAGATATCCACAGGAGGCGTATTGG
CCCCCGGATTGTCTAGTCCGGCGTCACAGAGGAGGGAGTTGGGATCTGAG
CGATCAACACCGAGAAAGCGCGGGGCTTCTAGACGACCGTCCCCCGAAAT
CCACCGTCGCGCCAGGCAAAACCGCACTCGAACCTGGCTTTTCCCCCCGC
GGGCCTTGGGTTGGATCCAGACCCTGGGACTGAAAAGAGGTCGCGCGGGA
CGGGTCTAGTCTTGGTCGGGAATGGTGCAATGGTTCGACTGAGCGGTTTG
CATTCCTGGAGACATGAGGACTCGTGTTCCTCCTCATACCGAGCTTGGAA
TCGTTGGGTTATCGTTACTTGCGTACTTGCACAATCTATCGCTGGGAGTC
AAGGTGGGACAGCTCCGACTCAGCCGGATGTCGAGCCCGGCTCGCTCAGC
ACGGCTCTGCGGTGCAATTACTCGAACATAATCCCCTGGGAAGCCATATC
TTGTCAGCTTGCGTGTGGGAGCGAAATGCAGGTCTCCAGCGCCGACCGCT
CGCGTTTGGGGAGGTCTTGTAAAACGCGAGCTAAATGCTGGAGTTTGGCC
GACCTGTGCTGGCCCGGCTGGAAGCATGTCACCCTCCACACGATTGGTCC
CGCATACACGTGCTCCGTCCCTCCCCCACCCAAGAATTCAAGCTCATTAT
CTCCCGATCTATGAACGCCACAGCAGTGTACTCGTCGACACATCTGTGAG
TCCTCAGGGTTGGGTAGGACCTCCCTCTCTCGGTAGTCCTTGTGAAAGGC
TATTTCAATCGCCAGGACTTCAGCCACACCATTCGCAACGTTCCGTGGCA
AAGCCTTGCTTAGCTTCCCCCTGCCGCGTGCGCATCGCTGCCCTCGGGGA
ACGTAACTCTTCACACGGGCGGTTCCGCCGTACACCCCGCGGGCGGCAGC
AAGCGGCAAGTGAGGTCTCGTCACTTCCCGTGGCGAACAGACGTACATAG
TTCAAGGGCCCGAGTTGCCAAAAAAATTGAGAGAAATTGGAAAAATAAAC
AGCTGGACGCCCCCGGGCGATCGCCACCTGGAAGGGTTGCTCCTCTTTTC
GTGGCAACGGGTTGCGGTCTGAGCAGGGCGTTTGCACCCCCTTCTGTTGG
CTGTAACCAACGTCCTCGAGAGCAAGGCACCGTGGACGGTTTCCACCAAA
ACAAGTGGTGGAGTTCGGGCCCAAATTTTTGTAGGCTTGCGGTGGCAGCA
CGATATCTAGTTGTGTGCAAGTCACCCAGGTTCATCTCCCAACAGCTCGT
CCGACGTGGTCCCCACAGCGACCTGGAAGAGTTTTCCTTGAGCAGCTCGC
CCGGAGTCAGGCTGTTATTACCGTTCATTCTAATGCTGGATGGTTGTCGT
CTGCTCGTGCTTCGCCACCGAGAACATTGATAACAACCAAAGCCTTGAGT
TGCAACGGACCAGAAGCAACATAGGGGAACGCCTCTTGAGTTCGCTTCAT
CGCCGCACCCCAGAACGTGTAGTGCACCTTCCTCCTATTAGTGCTGTCTC
AACCACGGATGTGAAGTACCAGGAAGAATGAAAAAGATTGGCCGCCGCAT
TTGTATCCCGTCGGAAAAATTCAGACACTGATACACGCTGTCTCGAGTAA
TGTCAACCATCTACCACGAGTACACCATTGTACCACATTTGAACAACCTA
GACTTGCCTGCACCAGCGATTCCGCTTCGGCGGATCCTGCAACGCGTTCC
CGAAGATGACGAATTTTTGTGTGCTACATACGATGAAGAAAGGGTTTCTA
CCCTGGGTTGTGGTGCCTAGCGTCTCAAATTATTCCGCAACAAATGTCTT
ACTAAGGAAGTACTTTGTAGTTTCGTGGCTCAATGGAAGCCGTATTAGTT
ATTTTTTCCGATCATTGTGTCCCGATTGGCGTACTACACCCTCACTGTTA
CGAATTCTCCAACATGACATAACATGACATAACCTGTCCGGAGTCCTTTA
TCGAGGGATGCTTCTTCCGTGCCCTTCACCCTTCCTTTCTCCCTCTCAAG
AGAGTTTGCCTCAGGCGTTTCCTTTTGGGCGCCCTGTTTGGACCCTTGCA
CTAGCGTAAACAGAAGTAAGTGGTTCGTGACCTTCCTAAGGCCCCTGGTG
TGTGCATGTGTTGAAAGTCATGTTTTGGGCTCGAATCGCCTCCGTGCAGC
AGGTCGCCCTTTCCCGAAAAACCATTCACCACCATTCTTCTCATGTATAA
GCTGCCACGTTGTTTTTGTTGTTGTTGTTGTCTTCACATGAAAAATTCTG
TCTCGGCAACTCCCGTGGTCACAGGCGACCCCCCATAAACAAAGGTATAC
CCCCTTTTACCCTCACTTCGCAAGAAAAGAGCGACACACAATAAAAGTAG
ACTCCAGACAAGCCGCTTAAACCACTCAGACATGAAAAAGATGATGCAAT
AAAAATAAGTCAAGACTAAGGAGACAAACGACAAGTAGATGCAATTGCAT
GCGATCGACGACAGAGAAAGCGAGCCGAGGCAAGGCCGCTTCTGACGGAA
ACCCAAGCCACGAAAGACCGGCAGACCAAACATCACGGGAATCCCTTTTT
TTGTTGGCTATTTTTCCCTCACATCAGAAAGCAGCTGGCTGTCGTGTTGG
ATTGTAACGTGTACTAGCAAGGGTTGGGGCTGGACAGGTAGAGTCGACCG
CCATCATAAGCAACAACGACGGCGACGACGACAACAACAACAACAACAAC
ACCGGCGAACACGACAGGGCGCCGCTACTGTAGCGGCGCGTGCTGCCGTG
GTCACTCGCGAGCGGTTTCCCTCAAAAATGTCCGCACGAAATACTGCACA
GCAGCAAAAAACACGACGGAAAGAGACTCGCAAGAACCTCCCAGCCTTGT
GCGTCTTTTGAATGTTTTGTCCCGTCCGCCATACTGAACCGCCTCTCTAG
TTAATTTAACACGACCCCCCGGAGTCTCTGTGCCTTGTCTCAGATGAGCG
TTGTTGACTCCGTTTCCTACAGAAGAGCCTGCCGATTGGATGGCGCACAG
AAAAGGGCAGCACTCCGAAAACCTTGCTGAAGCGCCCACCAAGTACACTG
CTGCTGTACATGGGACGGGGAGCAATGGCGTGGGATGTCTAGAAATCCCG
CAAGCCCTGCTGGCTTCTGGCTCGTGCGTGCCCCCTTCCCTCGCGCCCTT
CGCCTCTCGCCGACCCTCTCCGTCTGTCCTGATCCTCCCCCACCCCATGT
CCCGCCCACCATCGAAATCCGACAACCTGCTGGGACATGAACGGCGATGG
CGTTGACAACAGCGGGCTCCGCCTCCTTTTGCACCCGGGAAGTACGGCGG
TTTCCGCAACTTCGTCGACGAGATGCGCGTCCAGATGGCCACCCTCAAGT
CCAAGCTCGGCGGCAAGGATTCTCAGCTCTTCACGGAGATGAACAGCTGC
CCGCCCAAGCCTTTGCAGGTGAGCGCTTGCGAGCAGGTTTTTGTTGTAGC
TGTTGTTTGCGTTTGTGCGGTGTTGATCGATGGTGACCGTCGACGATCCC
CCTTATGCACCACTGGGGTAGATCATTGTAAAGGAGGACGGCGACAACAG
TAGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACGTCTGCAACAACAA
CGACAACAACAGCAGCAGCAGCAGCAGCAGCATCAACAACAACTACAACA
ACCACAACAACAACGATGACGACGTTGCAAAATCACGCAGGTGTTTGAGT
ACGGCCCCTCAAGGCCTACCTGGGCTCGAAACCCCGACAAGTACAAGTAC
CAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7521:306..5058-

>mRNA_H-canaliculatus_M_contigs7521.1.1 ID=mRNA_H-canaliculatus_M_contigs7521.1.1|Name=mRNA_H-canaliculatus_M_contigs7521.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=321bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7521:306..5058- (Hapterophycus canaliculatus Oshoro7m male)
AGGGGGAGGAGAGAAGGGTGCATTGGCACGTGGCTGAAGGTCGCTGCGAT
GGGCTTGGCTGTCTTTGCTACCGGAGCTGCTGCGTCTGATTCCGCCGGAG
GGCGGGCTCCGCCTCCTTTTGCACCCGGGAAGTACGGCGGTTTCCGCAAC
TTCGTCGACGAGATGCGCGTCCAGATGGCCACCCTCAAGTCCAAGCTCGG
CGGCAAGGATTCTCAGCTCTTCACGGAGATGAACAGCTGCCCGCCCAAGC
CTTTGCAGGTGTTTGAGTACGGCCCCTCAAGGCCTACCTGGGCTCGAAAC
CCCGACAAGTACAAGTACCAG
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