mRNA_H-canaliculatus_M_contigs75203.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75203.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75203.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs75203.1.1 vs.
Match: Short (chain dehydrogenase n=12 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A1H2Y546_9RHOB)

HSP 1 Score: 259 bits (661), Expect = 5.130e-85
Identity = 129/179 (72.07%), Postives = 152/179 (84.92%), Query Frame = 1
Query:    4 QVAFLGRNAERLATVEAEALAAGAPKAAGLLCDMQNIAQITATVARIIADFGGIDILINNAGIWHKAGPLDTIAPDMLEATVQTNLTGLMQITQAALPAIREAEQGAVLNVVSKSGVVAQAGQSVYSATKYGVRGFTDVLKEDEIGNGVRVAGLYQSGTNTGMFAKADEDVPNHIFTEP 540
            ++A LGR+A+RLA VEAE +AAGA +A G+ CD+QN   I+  V ++ A FGG+DILINNAGIWHK GPLD I P +L+ATVQTNLTGLMQITQAA+PA+R  ++G +LNVVSKSGVVAQAGQSVY+ATKYGVRGFT+VLK DE   GVRV G+YQSGTNTGMF+KA EDVPNHIFTEP
Sbjct:   31 RLAILGRDADRLAAVEAECVAAGASEAIGIACDVQNPDAISGAVEQVTAAFGGLDILINNAGIWHKTGPLDEIPPQLLQATVQTNLTGLMQITQAAIPALRANDEGIILNVVSKSGVVAQAGQSVYTATKYGVRGFTEVLKADEENTGVRVGGVYQSGTNTGMFSKAGEDVPNHIFTEP 209          
BLAST of mRNA_H-canaliculatus_M_contigs75203.1.1 vs.
Match: NADP-dependent (3-hydroxy acid dehydrogenase YdfG n=2 Tax=Sulfitobacter TaxID=60136 RepID=A0A1G7Y883_9RHOB)

HSP 1 Score: 256 bits (654), Expect = 5.950e-84
Identity = 131/180 (72.78%), Postives = 149/180 (82.78%), Query Frame = 1
Query:    1 AQVAFLGRNAERLATVEAEALAAGAPKAAGLLCDMQNIAQITATVARIIADFGGIDILINNAGIWHKAGPLDTIAPDMLEATVQTNLTGLMQITQAALPAIREAEQGAVLNVVSKSGVVAQAGQSVYSATKYGVRGFTDVLKEDEIGNGVRVAGLYQSGTNTGMFAKADEDVPNHIFTEP 540
            A++A LGRNAERL  V      AGAP+A  L CD+Q+ A I+A  A ++  FGG+DI+INNAGIWHKAGPLDTIAP+ML+ATVQTNLTGLMQ+TQA LPA+RE ++  VLNVVSKSGVVAQ GQSVY+ATKYGVRGFT+VLK DE   GVRV GLYQSGTNT MFAKA EDVPNHIFTEP
Sbjct:   30 ARLAILGRNAERLEAVAQACKEAGAPEALPLTCDLQDPAAISAVTADVLESFGGLDIVINNAGIWHKAGPLDTIAPEMLQATVQTNLTGLMQMTQALLPALRENDESIVLNVVSKSGVVAQVGQSVYTATKYGVRGFTEVLKADEAETGVRVGGLYQSGTNTEMFAKAGEDVPNHIFTEP 209          
BLAST of mRNA_H-canaliculatus_M_contigs75203.1.1 vs.
Match: Short (chain dehydrogenase n=11 Tax=Rhodobacterales TaxID=204455 RepID=A9DRR9_9RHOB)

HSP 1 Score: 255 bits (651), Expect = 1.700e-83
Identity = 129/180 (71.67%), Postives = 149/180 (82.78%), Query Frame = 1
Query:    1 AQVAFLGRNAERLATVEAEALAAGAPKAAGLLCDMQNIAQITATVARIIADFGGIDILINNAGIWHKAGPLDTIAPDMLEATVQTNLTGLMQITQAALPAIREAEQGAVLNVVSKSGVVAQAGQSVYSATKYGVRGFTDVLKEDEIGNGVRVAGLYQSGTNTGMFAKADEDVPNHIFTEP 540
            A++A LGR+  RL  V     AAGA +A GL CD+Q+   I  T A+++  FGG+DILINNAGIWHKAGPLDTIAP+ML+ATVQTNLTGLMQ+TQA LPA+R+ ++  +LNVVSKSGVVAQAGQSVY+ATKYGVRGFT+VLK DE   GVRV GLYQSGTNTGMFAKA EDVPNHIFTEP
Sbjct:   30 ARLAILGRDGTRLQAVAEACKAAGASEAIGLTCDLQDPLAIDQTAAQVVERFGGLDILINNAGIWHKAGPLDTIAPEMLQATVQTNLTGLMQMTQATLPALRDNDEAIILNVVSKSGVVAQAGQSVYTATKYGVRGFTEVLKADEENTGVRVGGLYQSGTNTGMFAKAGEDVPNHIFTEP 209          
BLAST of mRNA_H-canaliculatus_M_contigs75203.1.1 vs.
Match: 3-ketoacyl-(Acyl-carrier-protein) (reductase n=1 Tax=Roseobacter sp. SK209-2-6 TaxID=388739 RepID=A4ET39_9RHOB)

HSP 1 Score: 246 bits (628), Expect = 5.330e-80
Identity = 126/178 (70.79%), Postives = 144/178 (80.90%), Query Frame = 1
Query:    7 VAFLGRNAERLATVEAEALAAGAPKAAGLLCDMQNIAQITATVARIIADFGGIDILINNAGIWHKAGPLDTIAPDMLEATVQTNLTGLMQITQAALPAIREAEQGAVLNVVSKSGVVAQAGQSVYSATKYGVRGFTDVLKEDEIGNGVRVAGLYQSGTNTGMFAKADEDVPNHIFTEP 540
            +A LGRN  RL+ V  EA   GA KA G   DM + A + + VA I ADF G+DIL+NNAGIWHKAGPLDTI+ +ML ATVQTNLTGLMQ+T+A LP +R  ++ A+LNV SKSGVVAQAGQSVY+ATKYGVRGFTDVLKEDE  +GVRVAGLYQSGTNTGMF KA E+VPNHIFTEP
Sbjct:   32 LAILGRNEARLSAVAVEARTLGAAKARGYSADMTDAAALQSVVAEIEADFDGVDILVNNAGIWHKAGPLDTISDEMLIATVQTNLTGLMQLTKAVLPRLRSRDEAAILNVSSKSGVVAQAGQSVYTATKYGVRGFTDVLKEDEAESGVRVAGLYQSGTNTGMFVKAGEEVPNHIFTEP 209          
BLAST of mRNA_H-canaliculatus_M_contigs75203.1.1 vs.
Match: Oxidoreductase (n=6 Tax=Sulfitobacter mediterraneus TaxID=83219 RepID=A0A061SST1_9RHOB)

HSP 1 Score: 244 bits (624), Expect = 2.160e-79
Identity = 123/180 (68.33%), Postives = 147/180 (81.67%), Query Frame = 1
Query:    1 AQVAFLGRNAERLATVEAEALAAGAPKAAGLLCDMQNIAQITATVARIIADFGGIDILINNAGIWHKAGPLDTIAPDMLEATVQTNLTGLMQITQAALPAIREAEQGAVLNVVSKSGVVAQAGQSVYSATKYGVRGFTDVLKEDEIGNGVRVAGLYQSGTNTGMFAKADEDVPNHIFTEP 540
            A++A LGRN +RL  V AEAL AGAP A G +CD+ + AQI      I+ DFG IDILINNAGIWHKAGPLD+I P M+EAT+ TNL+G + +T+A LP +R  ++ A+LNVVSKSGV+AQAGQSVY+A+KYG+RGFTDVLK+DE  +GVRVAGLYQSGTNTGMF KA EDVPNHIFTEP
Sbjct:   30 ARIAALGRNKDRLDAVAAEALQAGAPAAQGFVCDLTHKAQIDTAATAILDDFGPIDILINNAGIWHKAGPLDSIDPAMIEATLATNLSGAIHLTRALLPGLRSRKEAAILNVVSKSGVLAQAGQSVYTASKYGMRGFTDVLKDDEAESGVRVAGLYQSGTNTGMFDKAGEDVPNHIFTEP 209          
BLAST of mRNA_H-canaliculatus_M_contigs75203.1.1 vs.
Match: Short (chain dehydrogenase n=1 Tax=Epibacterium ulvae TaxID=1156985 RepID=A0A1G5PXU5_9RHOB)

HSP 1 Score: 244 bits (623), Expect = 3.060e-79
Identity = 128/179 (71.51%), Postives = 142/179 (79.33%), Query Frame = 1
Query:    4 QVAFLGRNAERLATVEAEALAAGAPKAAGLLCDMQNIAQITATVARIIADFGGIDILINNAGIWHKAGPLDTIAPDMLEATVQTNLTGLMQITQAALPAIREAEQGAVLNVVSKSGVVAQAGQSVYSATKYGVRGFTDVLKEDEIGNGVRVAGLYQSGTNTGMFAKADEDVPNHIFTEP 540
            ++A LGRN  RL TV AE LA GA +A     D+ + A I     +I+ADFGG DILINNAGIWHKAGPLD+I  DML  TVQTNLT LMQ+T+  LPA+R  ++ AVLNV SKSGVVAQAGQSVYSATKYGVRGFTDVLKEDE   GVRVAGLYQSGTNTGMFAKA E+VPNHIFTEP
Sbjct:   31 RIAVLGRNQTRLDTVVAETLALGAAEARAYAVDLMDPAAIETGAQQILADFGGADILINNAGIWHKAGPLDSIDADMLVTTVQTNLTALMQLTRHVLPALRTRDEAAVLNVASKSGVVAQAGQSVYSATKYGVRGFTDVLKEDEAETGVRVAGLYQSGTNTGMFAKASEEVPNHIFTEP 209          
BLAST of mRNA_H-canaliculatus_M_contigs75203.1.1 vs.
Match: SDR (family oxidoreductase n=1 Tax=Parasedimentitalea marina TaxID=2483033 RepID=A0A3T0N7A9_9RHOB)

HSP 1 Score: 243 bits (620), Expect = 8.750e-79
Identity = 124/179 (69.27%), Postives = 143/179 (79.89%), Query Frame = 1
Query:    4 QVAFLGRNAERLATVEAEALAAGAPKAAGLLCDMQNIAQITATVARIIADFGGIDILINNAGIWHKAGPLDTIAPDMLEATVQTNLTGLMQITQAALPAIREAEQGAVLNVVSKSGVVAQAGQSVYSATKYGVRGFTDVLKEDEIGNGVRVAGLYQSGTNTGMFAKADEDVPNHIFTEP 540
            ++A LGRN+ RL  V AEA+  GA +A G   D  + A + +T   I ADFGG+DIL+NNAGIWHKAGPLDTI  D+L ATVQTNLT LMQ+T+  LPA+R  ++  +LNV SKSGVVAQAGQSVYSATKYGVRGFT+VLKEDE   GVRVAGLYQSGTNTGMFAKA E+VPNHIFTEP
Sbjct:   31 KLAILGRNSARLEAVVAEAMTLGAAEARGYAVDFMDSAALDSTAQAIQADFGGVDILVNNAGIWHKAGPLDTIDADLLVATVQTNLTALMQLTRHVLPALRNQDEAIILNVASKSGVVAQAGQSVYSATKYGVRGFTEVLKEDEAETGVRVAGLYQSGTNTGMFAKAGEEVPNHIFTEP 209          
BLAST of mRNA_H-canaliculatus_M_contigs75203.1.1 vs.
Match: SDR (family oxidoreductase n=1 Tax=Pseudophaeobacter sp. EL27 TaxID=2107580 RepID=UPI000EFACD59)

HSP 1 Score: 242 bits (617), Expect = 2.500e-78
Identity = 125/179 (69.83%), Postives = 145/179 (81.01%), Query Frame = 1
Query:    4 QVAFLGRNAERLATVEAEALAAGAPKAAGLLCDMQNIAQITATVARIIADFGGIDILINNAGIWHKAGPLDTIAPDMLEATVQTNLTGLMQITQAALPAIREAEQGAVLNVVSKSGVVAQAGQSVYSATKYGVRGFTDVLKEDEIGNGVRVAGLYQSGTNTGMFAKADEDVPNHIFTEP 540
            ++A LGR+  RL  V   A++ GA +A     D+ +   I A  A+I+ADFGGIDILINNAGIWHKAGPLDTI P +L  TVQTNLTGLMQ+TQA LP++R AE+ A+LNVVSKSGVVAQAGQSVY+ATKYGVRGF+DVLK+DE   GVRVA LYQSGTNTGMFAKA E+VPNHIFTEP
Sbjct:   31 RLAILGRDEARLNLVCKAAVSEGATEARSYAMDLMDAQTIAAIAAQILADFGGIDILINNAGIWHKAGPLDTIPPALLSETVQTNLTGLMQLTQAFLPSLRTAEEAAILNVVSKSGVVAQAGQSVYTATKYGVRGFSDVLKQDEAETGVRVAALYQSGTNTGMFAKAGEEVPNHIFTEP 209          
BLAST of mRNA_H-canaliculatus_M_contigs75203.1.1 vs.
Match: SDR (family oxidoreductase n=1 Tax=unclassified Roseobacter TaxID=196798 RepID=UPI0014915FD9)

HSP 1 Score: 242 bits (617), Expect = 2.500e-78
Identity = 124/179 (69.27%), Postives = 145/179 (81.01%), Query Frame = 1
Query:    4 QVAFLGRNAERLATVEAEALAAGAPKAAGLLCDMQNIAQITATVARIIADFGGIDILINNAGIWHKAGPLDTIAPDMLEATVQTNLTGLMQITQAALPAIREAEQGAVLNVVSKSGVVAQAGQSVYSATKYGVRGFTDVLKEDEIGNGVRVAGLYQSGTNTGMFAKADEDVPNHIFTEP 540
            ++A LGRNAERL  V AEA+AAGA +A     D+ + A + AT   I+ADF  +DILINNAGIWHKAGPLD+I+PD+L ATVQTNLT LMQ+T+  LP +R  ++ A+LN+ SKSGV+AQAGQSVYSATKYGVRGFTDVLKEDE   GVRVAGLYQSGTNT MFAKA E+VPN IFTEP
Sbjct:   31 RLAILGRNAERLDRVVAEAIAAGAKEARAYAFDLTDSAALDATATTILADFDAVDILINNAGIWHKAGPLDSISPDLLVATVQTNLTALMQLTRHILPHLRARDEAAILNIASKSGVIAQAGQSVYSATKYGVRGFTDVLKEDEAETGVRVAGLYQSGTNTQMFAKAGEEVPNQIFTEP 209          
BLAST of mRNA_H-canaliculatus_M_contigs75203.1.1 vs.
Match: 3-oxoacyl-[acyl-carrier-protein] (reductase FabG n=4 Tax=Phaeobacter italicus TaxID=481446 RepID=A0A0H5DJ53_9RHOB)

HSP 1 Score: 241 bits (616), Expect = 3.550e-78
Identity = 125/178 (70.22%), Postives = 140/178 (78.65%), Query Frame = 1
Query:    7 VAFLGRNAERLATVEAEALAAGAPKAAGLLCDMQNIAQITATVARIIADFGGIDILINNAGIWHKAGPLDTIAPDMLEATVQTNLTGLMQITQAALPAIREAEQGAVLNVVSKSGVVAQAGQSVYSATKYGVRGFTDVLKEDEIGNGVRVAGLYQSGTNTGMFAKADEDVPNHIFTEP 540
            +A +GRN  RL  V AE  A GA +A     D+ + A I    A ++ DFGG+DILINNAGIWHKAGPLD+I  DML ATVQTNLT LMQ+T+  LP +R+ E+ A+LNV SKSGVVAQAGQSVYSATKYGVRGFTDVLK DE   GVRVAGLYQSGTNTGMFAKADEDVPNHIFTEP
Sbjct:   32 IAIVGRNQARLDAVVAECKARGAAEARAYAADLTDAAAIEQAAAAMLDDFGGMDILINNAGIWHKAGPLDSIDADMLVATVQTNLTALMQLTRHVLPVLRQQEEAAILNVASKSGVVAQAGQSVYSATKYGVRGFTDVLKVDEAETGVRVAGLYQSGTNTGMFAKADEDVPNHIFTEP 209          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75203.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Short5.130e-8572.07chain dehydrogenase n=12 Tax=Roseobacteraceae TaxI... [more]
NADP-dependent5.950e-8472.783-hydroxy acid dehydrogenase YdfG n=2 Tax=Sulfitob... [more]
Short1.700e-8371.67chain dehydrogenase n=11 Tax=Rhodobacterales TaxID... [more]
3-ketoacyl-(Acyl-carrier-protein)5.330e-8070.79reductase n=1 Tax=Roseobacter sp. SK209-2-6 TaxID=... [more]
Oxidoreductase2.160e-7968.33n=6 Tax=Sulfitobacter mediterraneus TaxID=83219 Re... [more]
Short3.060e-7971.51chain dehydrogenase n=1 Tax=Epibacterium ulvae Tax... [more]
SDR8.750e-7969.27family oxidoreductase n=1 Tax=Parasedimentitalea m... [more]
SDR2.500e-7869.83family oxidoreductase n=1 Tax=Pseudophaeobacter sp... [more]
SDR2.500e-7869.27family oxidoreductase n=1 Tax=unclassified Roseoba... [more]
3-oxoacyl-[acyl-carrier-protein]3.550e-7870.22reductase FabG n=4 Tax=Phaeobacter italicus TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75203contigH-canaliculatus_M_contigs75203:3..542 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog52598.EE36_09620
PFAMsadh_short
Model size540
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.7e-85
EggNOG OGsCOG4221@1|root,COG4221@2|Bacteria,1QTXD@1224|Proteobacteria,2TW4Q@28211|Alphaproteobacteria,3ZVP0@60136|Sulfitobacter
DescriptionKR domain
Cds size540
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854089.710218-CDS-H-canaliculatus_M_contigs75203:2..5421696854089.710218-CDS-H-canaliculatus_M_contigs75203:2..542Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75203 3..542 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75203.1.1prot_H-canaliculatus_M_contigs75203.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75203 3..542 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75203.1.1

>prot_H-canaliculatus_M_contigs75203.1.1 ID=prot_H-canaliculatus_M_contigs75203.1.1|Name=mRNA_H-canaliculatus_M_contigs75203.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=180bp
AQVAFLGRNAERLATVEAEALAAGAPKAAGLLCDMQNIAQITATVARIIA
DFGGIDILINNAGIWHKAGPLDTIAPDMLEATVQTNLTGLMQITQAALPA
IREAEQGAVLNVVSKSGVVAQAGQSVYSATKYGVRGFTDVLKEDEIGNGV
RVAGLYQSGTNTGMFAKADEDVPNHIFTEP
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mRNA from alignment at H-canaliculatus_M_contigs75203:3..542+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75203.1.1 ID=mRNA_H-canaliculatus_M_contigs75203.1.1|Name=mRNA_H-canaliculatus_M_contigs75203.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=540bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75203:3..542+ (Hapterophycus canaliculatus Oshoro7m male)
GCCCAGGTCGCGTTTTTAGGACGCAACGCAGAACGGCTGGCGACAGTAGA GGCAGAAGCTTTGGCGGCGGGTGCCCCCAAAGCCGCAGGTTTGCTGTGTG ACATGCAGAACATCGCGCAAATTACTGCCACCGTTGCTCGGATAATCGCA GATTTTGGTGGCATAGACATTTTGATCAACAACGCCGGAATTTGGCACAA GGCAGGGCCGCTCGACACCATCGCGCCCGACATGCTTGAGGCGACAGTGC AGACAAACCTGACAGGCTTGATGCAAATCACCCAAGCCGCGCTGCCCGCG ATCCGAGAGGCGGAACAGGGTGCTGTGCTGAATGTTGTCTCGAAATCTGG CGTGGTCGCTCAGGCCGGCCAATCGGTCTATTCGGCGACAAAATATGGGG TGCGCGGGTTCACGGATGTTTTGAAAGAGGACGAGATCGGCAATGGCGTG CGCGTGGCGGGGTTGTACCAAAGCGGGACCAACACCGGCATGTTTGCCAA AGCGGATGAAGATGTTCCGAACCACATTTTCACCGAGCCT
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75203:3..542+

>mRNA_H-canaliculatus_M_contigs75203.1.1 ID=mRNA_H-canaliculatus_M_contigs75203.1.1|Name=mRNA_H-canaliculatus_M_contigs75203.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=540bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75203:3..542+ (Hapterophycus canaliculatus Oshoro7m male)
GCCCAGGTCGCGTTTTTAGGACGCAACGCAGAACGGCTGGCGACAGTAGA
GGCAGAAGCTTTGGCGGCGGGTGCCCCCAAAGCCGCAGGTTTGCTGTGTG
ACATGCAGAACATCGCGCAAATTACTGCCACCGTTGCTCGGATAATCGCA
GATTTTGGTGGCATAGACATTTTGATCAACAACGCCGGAATTTGGCACAA
GGCAGGGCCGCTCGACACCATCGCGCCCGACATGCTTGAGGCGACAGTGC
AGACAAACCTGACAGGCTTGATGCAAATCACCCAAGCCGCGCTGCCCGCG
ATCCGAGAGGCGGAACAGGGTGCTGTGCTGAATGTTGTCTCGAAATCTGG
CGTGGTCGCTCAGGCCGGCCAATCGGTCTATTCGGCGACAAAATATGGGG
TGCGCGGGTTCACGGATGTTTTGAAAGAGGACGAGATCGGCAATGGCGTG
CGCGTGGCGGGGTTGTACCAAAGCGGGACCAACACCGGCATGTTTGCCAA
AGCGGATGAAGATGTTCCGAACCACATTTTCACCGAGCCT
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