mRNA_H-canaliculatus_M_contigs75175.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
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Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs75175.1.1 vs.
Match: Putative (HTH-type transcriptional regulator YttP n=2 Tax=Rhodopirellula pilleata TaxID=2714738 RepID=A0A5C6A469_9BACT) HSP 1 Score: 198 bits (504), Expect = 4.310e-61 Identity = 101/147 (68.71%), Postives = 121/147 (82.31%), Query Frame = 1
Query: 1 EAALLGLTVSMLARMLSGDEEGWEALLMMREMQHPTAALEEMIQEYFKPLYDAVCQTIAELLRLSAETSSDDDHVNPTHGWRSEAMVPQMALGVVGQCLYFRIGRPVIERLIAPEIRDRHYDVESLCQHITATTLAACGHQDMPHFR 441
E L L ++L+RML+GDE+GWEA LMMREMQHPTAALEEM++EYF+PLYDA+CQTI +L L A D D V+ + WR+EAMVPQMALGVVGQCLY+RIGRPV+E+LIAPEIR RHY VESL +HITATTLAACG++ +P R
Sbjct: 114 EETLFRLVRTLLSRMLAGDEKGWEAQLMMREMQHPTAALEEMVREYFQPLYDALCQTIGDL--LPAIEVKDKDKVS-ANAWRTEAMVPQMALGVVGQCLYYRIGRPVMEQLIAPEIRARHYTVESLGRHITATTLAACGNRSLPEHR 257
BLAST of mRNA_H-canaliculatus_M_contigs75175.1.1 vs.
Match: TetR (family transcriptional regulator n=2 Tax=Rhodopirellula TaxID=265488 RepID=M5U933_9BACT) HSP 1 Score: 169 bits (429), Expect = 1.130e-49 Identity = 82/147 (55.78%), Postives = 109/147 (74.15%), Query Frame = 1
Query: 1 EAALLGLTVSMLARMLSGDEEGWEALLMMREMQHPTAALEEMIQEYFKPLYDAVCQTIAELLRLSAETSSDDDHVNPTHGWRSEAMVPQMALGVVGQCLYFRIGRPVIERLIAPEIRDRHYDVESLCQHITATTLAACGHQDMPHFR 441
E L L ++L+RML+ D GWEA+LMMREMQ PT A+ E++QEYF+PL+DA+CQTIA+L+ S+ PT W+ A+V Q ALGVVGQCL++ IG+PVIE+L+A EIR++H+D ESLC+HITA+TLAACG D+ R
Sbjct: 107 EETLGKLVRTLLSRMLASDNTGWEAMLMMREMQQPTTAMSEVVQEYFRPLHDAMCQTIAQLMAPLPVADSE-----PTRSWQENALVAQTALGVVGQCLHYLIGKPVIEQLVASEIREQHFDTESLCRHITASTLAACGRSDIVQIR 248
BLAST of mRNA_H-canaliculatus_M_contigs75175.1.1 vs.
Match: AcrR (family transcriptional regulator n=2 Tax=Rhodopirellula TaxID=265488 RepID=A0A7W5DUF9_9BACT) HSP 1 Score: 167 bits (422), Expect = 9.220e-49 Identity = 80/143 (55.94%), Postives = 107/143 (74.83%), Query Frame = 1
Query: 1 EAALLGLTVSMLARMLSGDEEGWEALLMMREMQHPTAALEEMIQEYFKPLYDAVCQTIAELLRLSAETSSDDDHVNPTHGWRSEAMVPQMALGVVGQCLYFRIGRPVIERLIAPEIRDRHYDVESLCQHITATTLAACGHQDM 429
E L L ++L+RMLS D GWE++LMMRE+Q PTAAL E+IQEYF+P++DA+CQTI +L+ S PT W+ A+V Q+ALGVVGQCL++ +G+ VIE+L+ PE+R RH+DV+SLC+HITATTLAACG D+
Sbjct: 113 EETLRKLVRTLLSRMLSSDSTGWESMLMMREVQQPTAALSEVIQEYFRPIHDALCQTIEQLIAPLEAAKSQ-----PTRSWQENALVAQVALGVVGQCLHYLLGKQVIEQLVQPEVRARHFDVDSLCRHITATTLAACGRSDI 250
BLAST of mRNA_H-canaliculatus_M_contigs75175.1.1 vs.
Match: Probable (transcriptional regulator n=12 Tax=Rhodopirellula TaxID=265488 RepID=Q7UY70_RHOBA) HSP 1 Score: 159 bits (401), Expect = 6.410e-46 Identity = 78/135 (57.78%), Postives = 106/135 (78.52%), Query Frame = 1
Query: 28 SMLARMLSGDEEGWEALLMMREMQHPTAALEEMIQEYFKPLYDAVCQTIAELLR-LSAETSSDDDHVNPTHGWRSEAMVPQMALGVVGQCLYFRIGRPVIERLIAPEIRDRHYDVESLCQHITATTLAACGHQDM 429
++L+RML+ DE GWEA+LMMREMQHPT A E MI+ YF+PLYDA+C+TI LL L A++S W+++A+VPQ+ALGVVGQCL++RIGRPV+ LI+PE+ + HY ++SLC+ ITA+TLAACG Q++
Sbjct: 108 TLLSRMLAADETGWEAMLMMREMQHPTPAFEGMIRGYFRPLYDALCKTIESLLPPLDAKSS-----------WQTDALVPQLALGVVGQCLHYRIGRPVMAHLISPEVIETHYGLDSLCRQITASTLAACGDQNV 231
BLAST of mRNA_H-canaliculatus_M_contigs75175.1.1 vs.
Match: CerR (family C-terminal domain-containing protein n=2 Tax=unclassified Rhodopirellula TaxID=2624920 RepID=UPI001E332DFE) HSP 1 Score: 158 bits (400), Expect = 1.130e-45 Identity = 76/137 (55.47%), Postives = 105/137 (76.64%), Query Frame = 1
Query: 19 LTVSMLARMLSGDEEGWEALLMMREMQHPTAALEEMIQEYFKPLYDAVCQTIAELLRLSAETSSDDDHVNPTHGWRSEAMVPQMALGVVGQCLYFRIGRPVIERLIAPEIRDRHYDVESLCQHITATTLAACGHQDM 429
L ++L+RML+ DE GWE++LMMREMQHPT+A++ ++++YFKPLYDA+CQTI LL SS W+++A+VPQ+ALGVVGQCL++RIGRPV+ LIAPE+ +HY ++LC+ ITATTLAAC Q++
Sbjct: 112 LVRTLLSRMLASDETGWESMLMMREMQHPTSAIDGLVRDYFKPLYDALCQTIGTLLPPLDANSS----------WQTDALVPQLALGVVGQCLHYRIGRPVLNHLIAPELLQKHYGSDALCRMITATTLAACQDQNV 238
BLAST of mRNA_H-canaliculatus_M_contigs75175.1.1 vs.
Match: Putative (HTH-type transcriptional regulator YttP n=1 Tax=Rhodopirellula solitaria TaxID=2527987 RepID=A0A5C5WY28_9BACT) HSP 1 Score: 147 bits (372), Expect = 2.060e-41 Identity = 74/140 (52.86%), Postives = 101/140 (72.14%), Query Frame = 1
Query: 10 LLGLTVSMLARMLSGDEEGWEALLMMREMQHPTAALEEMIQEYFKPLYDAVCQTIAELLRLSAETSSDDDHVNPTHGWRSEAMVPQMALGVVGQCLYFRIGRPVIERLIAPEIRDRHYDVESLCQHITATTLAACGHQDM 429
L + ++L+RML+GDEEG+EA+LMMREMQ PT L +I+EYF+PL+ +CQTI ELL+ + ++ + +V Q+ALGVV QCLY+RIGRPV ++LIA E +HYD +SLC+HITA+TLAACGH D+
Sbjct: 97 LTRIVQTLLSRMLAGDEEGFEAMLMMREMQSPTPVLGVLIREYFQPLFVVLCQTIEELLKPDPALENTAISLDSGDSAQDGDVVTQLALGVVSQCLYYRIGRPVYQQLIAAETLTKHYDAQSLCRHITASTLAACGHFDI 236
BLAST of mRNA_H-canaliculatus_M_contigs75175.1.1 vs.
Match: Transcriptional (regulator, TetR family n=1 Tax=Rhodopirellula islandica TaxID=595434 RepID=A0A0J1B427_RHOIS) HSP 1 Score: 146 bits (369), Expect = 2.910e-41 Identity = 73/130 (56.15%), Postives = 95/130 (73.08%), Query Frame = 1
Query: 28 SMLARMLSGDEEGWEALLMMREMQHPTAALEEMIQEYFKPLYDAVCQTIAELLRLSAETSSDDDHVNPTHGWRSEAMVPQMALGVVGQCLYFRIGRPVIERLIAPEIRDRHYDVESLCQHITATTLAACG 417
++L+RML+ DE GWEA+LMMREMQ PT A E MI YF+PLY+A+C+TI LL S+ W++ A+VPQMALGVVGQCL++RIGRPV+ LI+P++ HY ++SLC ITA+TLAACG
Sbjct: 94 TLLSRMLAADETGWEAMLMMREMQTPTPAFEGMIHGYFQPLYEALCKTIESLLPPLDSKSA----------WQTSALVPQMALGVVGQCLHYRIGRPVMAHLISPKLIQTHYGLDSLCNQITASTLAACG 213
BLAST of mRNA_H-canaliculatus_M_contigs75175.1.1 vs.
Match: Putative (HTH-type transcriptional regulator YttP n=1 Tax=Planctomycetes bacterium Poly21 TaxID=2528014 RepID=A0A5C6C7L5_9BACT) HSP 1 Score: 147 bits (371), Expect = 4.630e-41 Identity = 75/136 (55.15%), Postives = 103/136 (75.74%), Query Frame = 1
Query: 28 SMLARMLSGDEEGWEALLMMREMQHPTAALEEMIQEYFKPLYDAVCQTIAELLR--LSAETSSDDDHVNPTHGWRSEAMVPQMALGVVGQCLYFRIGRPVIERLIAPEIRDRHYDVESLCQHITATTLAACGHQDM 429
++LARML+GD+ G+EA+LMMREM PTA L +++EYFKP +D + TI +L+ L+ E ++ H T +E++V Q+ALGVVGQCLY+RIGRPV+E++IA E +HYD+ESLCQHITA+TLAACG D+
Sbjct: 121 TLLARMLAGDQRGFEAMLMMREMMSPTAVLGVLVREYFKPTFDVLRATIEQLIEPLLAGELNTQAAHEGSTKC--AESLVTQVALGVVGQCLYYRIGRPVLEQMIATETLAKHYDLESLCQHITASTLAACGRFDI 254
BLAST of mRNA_H-canaliculatus_M_contigs75175.1.1 vs.
Match: CerR (family C-terminal domain-containing protein n=1 Tax=Pirellulaceae bacterium TaxID=2699754 RepID=A0A7Y2AFA4_9BACT) HSP 1 Score: 118 bits (296), Expect = 3.310e-30 Identity = 62/145 (42.76%), Postives = 88/145 (60.69%), Query Frame = 1
Query: 1 EAALLGLTVSMLARMLSGDEEGWEALLMMREMQHPTAALEEMIQEYFKPLYDAVCQTIAELLRLSAETSSDDDHVNPTHGWRSEAMVPQMALGVVGQCLYFRIGRPVIERLIAPEIRDRHYDVESLCQHITATTLAACGHQDMPH 435
E AL+ L +ML+RML D GWE L+MREM HPT +E++ ++F+P++D + TI L+ A S D + E++V Q AL VVGQCLY+R+GR VI+ LI + +D++SLCQHI A TL+A + H
Sbjct: 71 EVALVRLIHTMLSRMLKSDPSGWETQLLMREMDHPTVVFQELVNDFFRPVFDQLKSTIVRLIGRGAVDSDFDANAI------DESVVEQFALSVVGQCLYYRLGRGVIDVLIPRGRQQESFDIDSLCQHIAAVTLSAAHNASFLH 209
BLAST of mRNA_H-canaliculatus_M_contigs75175.1.1 vs.
Match: CerR (family C-terminal domain-containing protein n=1 Tax=Roseimaritima sediminicola TaxID=2662066 RepID=UPI001387630F) HSP 1 Score: 117 bits (292), Expect = 8.940e-30 Identity = 62/129 (48.06%), Postives = 84/129 (65.12%), Query Frame = 1
Query: 25 VSMLARMLSGDEEGWEALLMMREMQHPTAALEEMIQEYFKPLYDAVCQTIAELLRLSAETSSDDDHVNPTHGWRSEAMVPQMALGVVGQCLYFRIGRPVIERLIAPEIRDRHYDVESLCQHITATTLAA 411
+++L RML GD+ GWEA LMMREMQ PT A EM+QEYF+PL + + TI LL + + + + P + Q+AL VVGQCLY+R+G V++ ++A E R RH+D SL +HITA TLAA
Sbjct: 97 LTLLQRMLDGDDSGWEAQLMMREMQRPTEAFHEMVQEYFRPLLEQLKATIGGLLEQAGQ-----ERIEPYQ-------LDQLALSVVGQCLYYRVGSEVLQIIVASEQRRRHFDTGSLARHITAFTLAA 213 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75175.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs75175.1.1 >prot_H-canaliculatus_M_contigs75175.1.1 ID=prot_H-canaliculatus_M_contigs75175.1.1|Name=mRNA_H-canaliculatus_M_contigs75175.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=137bp MLARMLSGDEEGWEALLMMREMQHPTAALEEMIQEYFKPLYDAVCQTIAEback to top mRNA from alignment at H-canaliculatus_M_contigs75175:2..442+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs75175.1.1 ID=mRNA_H-canaliculatus_M_contigs75175.1.1|Name=mRNA_H-canaliculatus_M_contigs75175.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=441bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75175:2..442+ (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75175:2..442+ >mRNA_H-canaliculatus_M_contigs75175.1.1 ID=mRNA_H-canaliculatus_M_contigs75175.1.1|Name=mRNA_H-canaliculatus_M_contigs75175.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=411bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75175:2..442+ (Hapterophycus canaliculatus Oshoro7m male)back to top |