mRNA_H-canaliculatus_M_contigs75175.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75175.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75175.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs75175.1.1 vs.
Match: Putative (HTH-type transcriptional regulator YttP n=2 Tax=Rhodopirellula pilleata TaxID=2714738 RepID=A0A5C6A469_9BACT)

HSP 1 Score: 198 bits (504), Expect = 4.310e-61
Identity = 101/147 (68.71%), Postives = 121/147 (82.31%), Query Frame = 1
Query:    1 EAALLGLTVSMLARMLSGDEEGWEALLMMREMQHPTAALEEMIQEYFKPLYDAVCQTIAELLRLSAETSSDDDHVNPTHGWRSEAMVPQMALGVVGQCLYFRIGRPVIERLIAPEIRDRHYDVESLCQHITATTLAACGHQDMPHFR 441
            E  L  L  ++L+RML+GDE+GWEA LMMREMQHPTAALEEM++EYF+PLYDA+CQTI +L  L A    D D V+  + WR+EAMVPQMALGVVGQCLY+RIGRPV+E+LIAPEIR RHY VESL +HITATTLAACG++ +P  R
Sbjct:  114 EETLFRLVRTLLSRMLAGDEKGWEAQLMMREMQHPTAALEEMVREYFQPLYDALCQTIGDL--LPAIEVKDKDKVS-ANAWRTEAMVPQMALGVVGQCLYYRIGRPVMEQLIAPEIRARHYTVESLGRHITATTLAACGNRSLPEHR 257          
BLAST of mRNA_H-canaliculatus_M_contigs75175.1.1 vs.
Match: TetR (family transcriptional regulator n=2 Tax=Rhodopirellula TaxID=265488 RepID=M5U933_9BACT)

HSP 1 Score: 169 bits (429), Expect = 1.130e-49
Identity = 82/147 (55.78%), Postives = 109/147 (74.15%), Query Frame = 1
Query:    1 EAALLGLTVSMLARMLSGDEEGWEALLMMREMQHPTAALEEMIQEYFKPLYDAVCQTIAELLRLSAETSSDDDHVNPTHGWRSEAMVPQMALGVVGQCLYFRIGRPVIERLIAPEIRDRHYDVESLCQHITATTLAACGHQDMPHFR 441
            E  L  L  ++L+RML+ D  GWEA+LMMREMQ PT A+ E++QEYF+PL+DA+CQTIA+L+       S+     PT  W+  A+V Q ALGVVGQCL++ IG+PVIE+L+A EIR++H+D ESLC+HITA+TLAACG  D+   R
Sbjct:  107 EETLGKLVRTLLSRMLASDNTGWEAMLMMREMQQPTTAMSEVVQEYFRPLHDAMCQTIAQLMAPLPVADSE-----PTRSWQENALVAQTALGVVGQCLHYLIGKPVIEQLVASEIREQHFDTESLCRHITASTLAACGRSDIVQIR 248          
BLAST of mRNA_H-canaliculatus_M_contigs75175.1.1 vs.
Match: AcrR (family transcriptional regulator n=2 Tax=Rhodopirellula TaxID=265488 RepID=A0A7W5DUF9_9BACT)

HSP 1 Score: 167 bits (422), Expect = 9.220e-49
Identity = 80/143 (55.94%), Postives = 107/143 (74.83%), Query Frame = 1
Query:    1 EAALLGLTVSMLARMLSGDEEGWEALLMMREMQHPTAALEEMIQEYFKPLYDAVCQTIAELLRLSAETSSDDDHVNPTHGWRSEAMVPQMALGVVGQCLYFRIGRPVIERLIAPEIRDRHYDVESLCQHITATTLAACGHQDM 429
            E  L  L  ++L+RMLS D  GWE++LMMRE+Q PTAAL E+IQEYF+P++DA+CQTI +L+       S      PT  W+  A+V Q+ALGVVGQCL++ +G+ VIE+L+ PE+R RH+DV+SLC+HITATTLAACG  D+
Sbjct:  113 EETLRKLVRTLLSRMLSSDSTGWESMLMMREVQQPTAALSEVIQEYFRPIHDALCQTIEQLIAPLEAAKSQ-----PTRSWQENALVAQVALGVVGQCLHYLLGKQVIEQLVQPEVRARHFDVDSLCRHITATTLAACGRSDI 250          
BLAST of mRNA_H-canaliculatus_M_contigs75175.1.1 vs.
Match: Probable (transcriptional regulator n=12 Tax=Rhodopirellula TaxID=265488 RepID=Q7UY70_RHOBA)

HSP 1 Score: 159 bits (401), Expect = 6.410e-46
Identity = 78/135 (57.78%), Postives = 106/135 (78.52%), Query Frame = 1
Query:   28 SMLARMLSGDEEGWEALLMMREMQHPTAALEEMIQEYFKPLYDAVCQTIAELLR-LSAETSSDDDHVNPTHGWRSEAMVPQMALGVVGQCLYFRIGRPVIERLIAPEIRDRHYDVESLCQHITATTLAACGHQDM 429
            ++L+RML+ DE GWEA+LMMREMQHPT A E MI+ YF+PLYDA+C+TI  LL  L A++S           W+++A+VPQ+ALGVVGQCL++RIGRPV+  LI+PE+ + HY ++SLC+ ITA+TLAACG Q++
Sbjct:  108 TLLSRMLAADETGWEAMLMMREMQHPTPAFEGMIRGYFRPLYDALCKTIESLLPPLDAKSS-----------WQTDALVPQLALGVVGQCLHYRIGRPVMAHLISPEVIETHYGLDSLCRQITASTLAACGDQNV 231          
BLAST of mRNA_H-canaliculatus_M_contigs75175.1.1 vs.
Match: CerR (family C-terminal domain-containing protein n=2 Tax=unclassified Rhodopirellula TaxID=2624920 RepID=UPI001E332DFE)

HSP 1 Score: 158 bits (400), Expect = 1.130e-45
Identity = 76/137 (55.47%), Postives = 105/137 (76.64%), Query Frame = 1
Query:   19 LTVSMLARMLSGDEEGWEALLMMREMQHPTAALEEMIQEYFKPLYDAVCQTIAELLRLSAETSSDDDHVNPTHGWRSEAMVPQMALGVVGQCLYFRIGRPVIERLIAPEIRDRHYDVESLCQHITATTLAACGHQDM 429
            L  ++L+RML+ DE GWE++LMMREMQHPT+A++ ++++YFKPLYDA+CQTI  LL      SS          W+++A+VPQ+ALGVVGQCL++RIGRPV+  LIAPE+  +HY  ++LC+ ITATTLAAC  Q++
Sbjct:  112 LVRTLLSRMLASDETGWESMLMMREMQHPTSAIDGLVRDYFKPLYDALCQTIGTLLPPLDANSS----------WQTDALVPQLALGVVGQCLHYRIGRPVLNHLIAPELLQKHYGSDALCRMITATTLAACQDQNV 238          
BLAST of mRNA_H-canaliculatus_M_contigs75175.1.1 vs.
Match: Putative (HTH-type transcriptional regulator YttP n=1 Tax=Rhodopirellula solitaria TaxID=2527987 RepID=A0A5C5WY28_9BACT)

HSP 1 Score: 147 bits (372), Expect = 2.060e-41
Identity = 74/140 (52.86%), Postives = 101/140 (72.14%), Query Frame = 1
Query:   10 LLGLTVSMLARMLSGDEEGWEALLMMREMQHPTAALEEMIQEYFKPLYDAVCQTIAELLRLSAETSSDDDHVNPTHGWRSEAMVPQMALGVVGQCLYFRIGRPVIERLIAPEIRDRHYDVESLCQHITATTLAACGHQDM 429
            L  +  ++L+RML+GDEEG+EA+LMMREMQ PT  L  +I+EYF+PL+  +CQTI ELL+      +    ++     +   +V Q+ALGVV QCLY+RIGRPV ++LIA E   +HYD +SLC+HITA+TLAACGH D+
Sbjct:   97 LTRIVQTLLSRMLAGDEEGFEAMLMMREMQSPTPVLGVLIREYFQPLFVVLCQTIEELLKPDPALENTAISLDSGDSAQDGDVVTQLALGVVSQCLYYRIGRPVYQQLIAAETLTKHYDAQSLCRHITASTLAACGHFDI 236          
BLAST of mRNA_H-canaliculatus_M_contigs75175.1.1 vs.
Match: Transcriptional (regulator, TetR family n=1 Tax=Rhodopirellula islandica TaxID=595434 RepID=A0A0J1B427_RHOIS)

HSP 1 Score: 146 bits (369), Expect = 2.910e-41
Identity = 73/130 (56.15%), Postives = 95/130 (73.08%), Query Frame = 1
Query:   28 SMLARMLSGDEEGWEALLMMREMQHPTAALEEMIQEYFKPLYDAVCQTIAELLRLSAETSSDDDHVNPTHGWRSEAMVPQMALGVVGQCLYFRIGRPVIERLIAPEIRDRHYDVESLCQHITATTLAACG 417
            ++L+RML+ DE GWEA+LMMREMQ PT A E MI  YF+PLY+A+C+TI  LL      S+          W++ A+VPQMALGVVGQCL++RIGRPV+  LI+P++   HY ++SLC  ITA+TLAACG
Sbjct:   94 TLLSRMLAADETGWEAMLMMREMQTPTPAFEGMIHGYFQPLYEALCKTIESLLPPLDSKSA----------WQTSALVPQMALGVVGQCLHYRIGRPVMAHLISPKLIQTHYGLDSLCNQITASTLAACG 213          
BLAST of mRNA_H-canaliculatus_M_contigs75175.1.1 vs.
Match: Putative (HTH-type transcriptional regulator YttP n=1 Tax=Planctomycetes bacterium Poly21 TaxID=2528014 RepID=A0A5C6C7L5_9BACT)

HSP 1 Score: 147 bits (371), Expect = 4.630e-41
Identity = 75/136 (55.15%), Postives = 103/136 (75.74%), Query Frame = 1
Query:   28 SMLARMLSGDEEGWEALLMMREMQHPTAALEEMIQEYFKPLYDAVCQTIAELLR--LSAETSSDDDHVNPTHGWRSEAMVPQMALGVVGQCLYFRIGRPVIERLIAPEIRDRHYDVESLCQHITATTLAACGHQDM 429
            ++LARML+GD+ G+EA+LMMREM  PTA L  +++EYFKP +D +  TI +L+   L+ E ++   H   T    +E++V Q+ALGVVGQCLY+RIGRPV+E++IA E   +HYD+ESLCQHITA+TLAACG  D+
Sbjct:  121 TLLARMLAGDQRGFEAMLMMREMMSPTAVLGVLVREYFKPTFDVLRATIEQLIEPLLAGELNTQAAHEGSTKC--AESLVTQVALGVVGQCLYYRIGRPVLEQMIATETLAKHYDLESLCQHITASTLAACGRFDI 254          
BLAST of mRNA_H-canaliculatus_M_contigs75175.1.1 vs.
Match: CerR (family C-terminal domain-containing protein n=1 Tax=Pirellulaceae bacterium TaxID=2699754 RepID=A0A7Y2AFA4_9BACT)

HSP 1 Score: 118 bits (296), Expect = 3.310e-30
Identity = 62/145 (42.76%), Postives = 88/145 (60.69%), Query Frame = 1
Query:    1 EAALLGLTVSMLARMLSGDEEGWEALLMMREMQHPTAALEEMIQEYFKPLYDAVCQTIAELLRLSAETSSDDDHVNPTHGWRSEAMVPQMALGVVGQCLYFRIGRPVIERLIAPEIRDRHYDVESLCQHITATTLAACGHQDMPH 435
            E AL+ L  +ML+RML  D  GWE  L+MREM HPT   +E++ ++F+P++D +  TI  L+   A  S  D +         E++V Q AL VVGQCLY+R+GR VI+ LI    +   +D++SLCQHI A TL+A  +    H
Sbjct:   71 EVALVRLIHTMLSRMLKSDPSGWETQLLMREMDHPTVVFQELVNDFFRPVFDQLKSTIVRLIGRGAVDSDFDANAI------DESVVEQFALSVVGQCLYYRLGRGVIDVLIPRGRQQESFDIDSLCQHIAAVTLSAAHNASFLH 209          
BLAST of mRNA_H-canaliculatus_M_contigs75175.1.1 vs.
Match: CerR (family C-terminal domain-containing protein n=1 Tax=Roseimaritima sediminicola TaxID=2662066 RepID=UPI001387630F)

HSP 1 Score: 117 bits (292), Expect = 8.940e-30
Identity = 62/129 (48.06%), Postives = 84/129 (65.12%), Query Frame = 1
Query:   25 VSMLARMLSGDEEGWEALLMMREMQHPTAALEEMIQEYFKPLYDAVCQTIAELLRLSAETSSDDDHVNPTHGWRSEAMVPQMALGVVGQCLYFRIGRPVIERLIAPEIRDRHYDVESLCQHITATTLAA 411
            +++L RML GD+ GWEA LMMREMQ PT A  EM+QEYF+PL + +  TI  LL  + +     + + P         + Q+AL VVGQCLY+R+G  V++ ++A E R RH+D  SL +HITA TLAA
Sbjct:   97 LTLLQRMLDGDDSGWEAQLMMREMQRPTEAFHEMVQEYFRPLLEQLKATIGGLLEQAGQ-----ERIEPYQ-------LDQLALSVVGQCLYYRVGSEVLQIIVASEQRRRHFDTGSLARHITAFTLAA 213          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75175.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Putative4.310e-6168.71HTH-type transcriptional regulator YttP n=2 Tax=Rh... [more]
TetR1.130e-4955.78family transcriptional regulator n=2 Tax=Rhodopire... [more]
AcrR9.220e-4955.94family transcriptional regulator n=2 Tax=Rhodopire... [more]
Probable6.410e-4657.78transcriptional regulator n=12 Tax=Rhodopirellula ... [more]
CerR1.130e-4555.47family C-terminal domain-containing protein n=2 Ta... [more]
Putative2.060e-4152.86HTH-type transcriptional regulator YttP n=1 Tax=Rh... [more]
Transcriptional2.910e-4156.15regulator, TetR family n=1 Tax=Rhodopirellula isla... [more]
Putative4.630e-4155.15HTH-type transcriptional regulator YttP n=1 Tax=Pl... [more]
CerR3.310e-3042.76family C-terminal domain-containing protein n=1 Ta... [more]
CerR8.940e-3048.06family C-terminal domain-containing protein n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75175contigH-canaliculatus_M_contigs75175:2..442 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog595460.RRSWK_02415
PFAMsDUF1956,TetR_N
Model size441
Max annot lvl203682|Planctomycetes
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.25e-47
EggNOG OGsCOG1309@1|root,COG1309@2|Bacteria,2J08X@203682|Planctomycetes
DescriptionTranscriptional regulator
Cds size411
COG categoryK
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854089.3970392-UTR-H-canaliculatus_M_contigs75175:1..311696854089.3970392-UTR-H-canaliculatus_M_contigs75175:1..31Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs75175 2..31 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854089.4102654-CDS-H-canaliculatus_M_contigs75175:31..4421696854089.4102654-CDS-H-canaliculatus_M_contigs75175:31..442Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75175 32..442 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75175.1.1prot_H-canaliculatus_M_contigs75175.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75175 32..442 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75175.1.1

>prot_H-canaliculatus_M_contigs75175.1.1 ID=prot_H-canaliculatus_M_contigs75175.1.1|Name=mRNA_H-canaliculatus_M_contigs75175.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=137bp
MLARMLSGDEEGWEALLMMREMQHPTAALEEMIQEYFKPLYDAVCQTIAE
LLRLSAETSSDDDHVNPTHGWRSEAMVPQMALGVVGQCLYFRIGRPVIER
LIAPEIRDRHYDVESLCQHITATTLAACGHQDMPHFR
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mRNA from alignment at H-canaliculatus_M_contigs75175:2..442+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75175.1.1 ID=mRNA_H-canaliculatus_M_contigs75175.1.1|Name=mRNA_H-canaliculatus_M_contigs75175.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=441bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75175:2..442+ (Hapterophycus canaliculatus Oshoro7m male)
GAAGCCGCCTTACTGGGACTGACGGTTAGCATGCTCGCCCGAATGCTCTC CGGTGATGAAGAGGGTTGGGAAGCTCTACTGATGATGCGAGAGATGCAGC ATCCGACTGCGGCTCTTGAAGAGATGATTCAGGAGTACTTCAAGCCGCTT TACGATGCGGTTTGCCAAACGATCGCGGAGCTTTTGAGGCTTTCAGCAGA GACTAGTTCAGACGATGATCATGTTAATCCCACGCACGGATGGCGATCCG AGGCGATGGTTCCCCAAATGGCATTGGGGGTCGTTGGGCAATGCCTTTAT TTCCGAATCGGCCGACCGGTGATCGAACGATTGATCGCACCCGAAATTCG GGACCGCCACTACGACGTCGAGTCGTTATGCCAACACATTACCGCCACGA CGCTCGCCGCATGCGGGCACCAAGACATGCCGCACTTTCGT
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75175:2..442+

>mRNA_H-canaliculatus_M_contigs75175.1.1 ID=mRNA_H-canaliculatus_M_contigs75175.1.1|Name=mRNA_H-canaliculatus_M_contigs75175.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=411bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75175:2..442+ (Hapterophycus canaliculatus Oshoro7m male)
ATGCTCGCCCGAATGCTCTCCGGTGATGAAGAGGGTTGGGAAGCTCTACT
GATGATGCGAGAGATGCAGCATCCGACTGCGGCTCTTGAAGAGATGATTC
AGGAGTACTTCAAGCCGCTTTACGATGCGGTTTGCCAAACGATCGCGGAG
CTTTTGAGGCTTTCAGCAGAGACTAGTTCAGACGATGATCATGTTAATCC
CACGCACGGATGGCGATCCGAGGCGATGGTTCCCCAAATGGCATTGGGGG
TCGTTGGGCAATGCCTTTATTTCCGAATCGGCCGACCGGTGATCGAACGA
TTGATCGCACCCGAAATTCGGGACCGCCACTACGACGTCGAGTCGTTATG
CCAACACATTACCGCCACGACGCTCGCCGCATGCGGGCACCAAGACATGC
CGCACTTTCGT
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