mRNA_H-canaliculatus_M_contigs7517.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7517.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7517.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7517.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF55_ECTSI)

HSP 1 Score: 258 bits (658), Expect = 4.880e-66
Identity = 397/807 (49.19%), Postives = 441/807 (54.65%), Query Frame = 1
Query:  838 SSSQRARESDLAAGGGRHKLD-SRERGDGEKAERKRRRSDPSEPEG--ISGRHGGDRHSDEYAEDDRGSS--HRPSKKKSXXXXXXXXXXRGDRPLPDSLRAGRAGSEEASRGRKRSRDLGGADPQAEGYAAAAVLRSEPFRRSLDPHRQRPEPESGRNGGSGELRGVPRQSSARSRADSDLSPRRGDRRDRSEKRVRRGXXXXXXXXXXXDTSSVKSRTGASKDRPQGRRG--GRESAADASVSGGT-----GLPGMEGYSSAASPPPAGLELSGFA----TLSRGRADREHQGLGSLDKLDVYGPGPGDRGSSXXXXXXXXXXXXXXXXXXXXXXXXXS-------AHGRGXXXXXXXXXXXXXXXRSETDRSHXXXXXXXXXXXXXXXXXXXSERDASXXXXXXXXXXXXXXXXXXXXXXXXXXX----------------EYARMADKGCRESSGRRGDIGLRQSSSSTLGGIRRSPERGAQPKTAREGSSRWRAGSPSRNDSRGRSSSARDSRYSKSGXXXXXXXXXXXXFSSGSADRLAGAAAATGHSGMGMGDLGRGMGVSIIGGTRVLMPVSNMMEAVAAAAATSRGG----DRHA---GGRLDDRDGXXXXXXXXXXXXXEMRSSNRRXXXXXXXXEDLWRGRSRSEXDQRRARRGXXXSEDRGRRRETGGXXXXXSDGRRARGDSRDEATQALGQASPPQ-EEEPEEGELVIDPSTALPSPPAASASGSVRKSRWGNVETGPVLSVFSAGAGAAXXXXXADVQGISRPSR-----------DGGEGSIGDGDGEGNE 3084
            SSSQRARE D AA G R K D SRER   E  ERKRRRSD SE EG  +S RH GDRH D++AEDDR SS  HRPSKKK XXXXXXXXXX G        R GRAGS E+SR  KRS D   A PQ EGYAA A L+ +P  RS +  R R E ESGR   S ELR  PR+S  RSRADS LSPRR D    SEKR RRG           D  + + RTG S++RP  RRG   R+S   AS           LPGMEGY SA+SPP A LE SG      T  RGR   + QGLGS   LD Y PG G   S                                  +HGRG       XXXXXXXX        XXXXXXXXXXXXXXXXXXX      XXXXXXXXXXXXXXXXXXXXXXXXXXX                +Y+R+AD   RESSGRRGDIG   SS S   G R SPERG Q   AR+G++R R GSP+R+DSRGR             XXXXXXXXXXXX                      MG+LG GMGVSIIGGT VLMPV+ MMEA      + RGG    DRH+   G RLDDRD XXXXXX       + R             +D W  RSR  X       GXXX            XXXX +D RR+R DS++EA QALGQASP + EE+PEEGELV+DPS  LP+PPA SA    RKSRWG+VE     +    G G       A  +G SR S+           DGG+ + GDGD  G E
Sbjct:  708 SSSQRAREPDFAAEGVRRKSDNSRER---EGGERKRRRSDLSESEGASVSARHDGDRHPDDHAEDDRNSSNTHRPSKKKXXXXXXXXXXXXGXXHSEPHHRPGRAGSSESSR--KRSCDFDAA-PQLEGYAAVA-LQPDPLHRSAETRRHRSEQESGRT--SSELRDAPRRS--RSRADSGLSPRRDDGHSGSEKRARRGSNGGSG-----DGYAGQGRTGTSRERPSARRGMTPRDSVTGASSXXXXXXXXGALPGMEGYGSASSPP-ASLEFSGGGLGGKTSERGRDAHDRQGLGSWKALDAYEPGLGRDSSPDGGGRRRRGDGGKDGGARPRLASSVDRYGPGVDSHGRGGGGRSERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSELDYSRVADMNGRESSGRRGDIGSHPSSLSNARGSRWSPERGTQSTAARDGTNRRRPGSPARDDSRGRXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------------MGNLGMGMGVSIIGGTPVLMPVAKMMEA------SLRGGXXXXDRHSASGGNRLDDRDXXXXXXXHGTGRREDER-------------DDRWGVRSRXXXXXXXXXGGXXXXX-------XXXXXXXGADIRRSRADSKNEA-QALGQASPQEPEEKPEEGELVLDPSMGLPNPPAPSA----RKSRWGDVEKAATFAGTRGGGGGDRGFVAAAARGESRWSQEERGEKLVGSDDGGKRAPGDGDDAGGE 1446          
BLAST of mRNA_H-canaliculatus_M_contigs7517.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK50_9PHAE)

HSP 1 Score: 209 bits (532), Expect = 3.930e-51
Identity = 317/642 (49.38%), Postives = 346/642 (53.89%), Query Frame = 1
Query:  838 SSSQRARESDLAAGGGRHKLD-SRERGDGEKAERKRRRSDPSEPEG--ISGRHGGDRHSDEYAEDDRGSS--HRPSKKKSXXXXXXXXXXRGDRPLPDSLRAGRAGSEEASRGRKRSRDLGGADPQAEGYAAAAVLRSEPFRRSLDPHRQRPEPESGRNGGSGELRGVPRQSSARSRADSDLSPRRGDRRDRSEKRVRRGXXXXXXXXXXXDTSSVKSRTGASKDRPQGRRGG--RESAADASVSGGTG-----LPGMEGYSSAASPPPAGLELSGFA----TLSRGRADREHQGLGSLDKLDVYGPGPGDRGSSXXXXXXXXXXXXXXXXXXXXXXXXXS-------AHGRGXXXXXXXXXXXXXXXRSETDRSHXXXXXXXXXXXXXXXXXXXSERDASXXXXXXXXXXXXXXXXXXXXXXXXXXXEYARMADKGCRESSGRRGDIGLRQSSSSTLGGIRRSPERGAQPKTAREGSSRWRAGSPSRNDSRGRSSSARDSRYSKSGXXXXXXXXXXXXFSSGSADRLAGAAAATGHSGMGMGDLGRGMGVSIIGGTRVLMPVSNMMEAVAAAAATSRGG----DRHA---GGRLDDRDGXXXXXXXXXXXXXEMRSSNRRXXXXXXXXEDLWRGRSRSEXD 2673
            SSSQRARE D AA G R K D SRER   E  ERKRRRSD SE EG  IS RH  DRH D++AEDD  SS  HRPSKKKSXXXXXXXXXX          R GRAGS E+SR  KRSRD   A P  EGYAA A L+ +P  RS +  R R E ESGR   S ELR  PRQS  RSRADS LSPRR D    SEK  RRG           D+ + + RTG S++RP  RRG   R+S A AS SGG G     LPGMEGY SA+SPP A LE SG         RGR   + QGLGSL  LD YGPG G   S   XXXXXXXX                       +HGRG   XXXXXXXXXXXX        XXXXXXXXXXXXXXXXXXX      XXXXXXX                    +Y R+AD   RESSGRR DIG   SSSS   G R SPERG Q   +R+G++R R GSP+R+DSRG              XXXXXXXXXXXX                              GVSIIGGT VLMPV+ MMEA      + RGG    DRH+   G RLDDRD              E   ++RR        +D W  RSRSE D
Sbjct:  713 SSSQRAREPDFAAEGVRRKSDNSRER---EGGERKRRRSDLSESEGASISARHD-DRHPDDHAEDDHNSSSTHRPSKKKSXXXXXXXXXXXXXXXXXXXXRPGRAGSSESSR--KRSRDFDAAPPL-EGYAAVA-LQPDPLHRSTETRRHRSEQESGRT--SSELRDAPRQS--RSRADSGLSPRRDDGHGGSEKSARRGSNGGTG-----DSHAGQGRTGTSRERPSARRGAAPRDSVAGASFSGGNGXXGGALPGMEGYGSASSPP-ASLEFSGGGLGGKASERGRDAHDRQGLGSLKTLDAYGPGLGRDSSPDGXXXXXXXXGGKDGGVRPRLASSVDRYWPGVDSHGRGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSEL----------------DYLRVADMNGRESSGRRADIGSHPSSSSNARGSRWSPERGTQSTASRDGTNRRRPGSPARDDSRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------------GVSIIGGTPVLMPVAKMMEA------SLRGGXXXXDRHSASGGSRLDDRD-----------RDRERHGTSRREDER----DDRWGVRSRSEDD 1279          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7517.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized4.880e-6649.19protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.930e-5149.38protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7517contigH-canaliculatus_M_contigs7517:70..5248 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Model size3879
Hectar predicted targeting categoryother localisation
Exons5
Cds size3879
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854089.3221595-CDS-H-canaliculatus_M_contigs7517:69..4561696854089.3221595-CDS-H-canaliculatus_M_contigs7517:69..456Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7517 70..456 -
1696854089.3333645-CDS-H-canaliculatus_M_contigs7517:522..8631696854089.3333645-CDS-H-canaliculatus_M_contigs7517:522..863Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7517 523..863 -
1696854089.344059-CDS-H-canaliculatus_M_contigs7517:1518..17001696854089.344059-CDS-H-canaliculatus_M_contigs7517:1518..1700Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7517 1519..1700 -
1696854089.3567328-CDS-H-canaliculatus_M_contigs7517:1772..26021696854089.3567328-CDS-H-canaliculatus_M_contigs7517:1772..2602Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7517 1773..2602 -
1696854089.367062-CDS-H-canaliculatus_M_contigs7517:3109..52481696854089.367062-CDS-H-canaliculatus_M_contigs7517:3109..5248Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7517 3110..5248 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7517.1.1prot_H-canaliculatus_M_contigs7517.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7517 70..5248 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7517.1.1

>prot_H-canaliculatus_M_contigs7517.1.1 ID=prot_H-canaliculatus_M_contigs7517.1.1|Name=mRNA_H-canaliculatus_M_contigs7517.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=1293bp
TSSPKKRVLSKREREEEERRRRKEEARRAGKEKGKVKALERERQKKEREV
ERQKMIADSRRKKAEEEAARKERDARDKADEAARRGGGGGKAEDEQPPQR
QQQQQQQPPPPQQDPAGRRDRDRDRKRDQPSAKAAAPEESRRDHRDTAKS
RDRHDRARDREGRDKGGGSDAKASARGTERSGGGGGGGSGREKEDSRRPG
APGDSRGGRSDKEQRGRGKEADRSSGRRERDDGRLPHNLDDGREGPRAGV
GVGRGYEGQDGQQRVFEDKWRGDGVRNEGSSSQRARESDLAAGGGRHKLD
SRERGDGEKAERKRRRSDPSEPEGISGRHGGDRHSDEYAEDDRGSSHRPS
KKKSKKDKRDRKDKRGDRPLPDSLRAGRAGSEEASRGRKRSRDLGGADPQ
AEGYAAAAVLRSEPFRRSLDPHRQRPEPESGRNGGSGELRGVPRQSSARS
RADSDLSPRRGDRRDRSEKRVRRGGGVDDGGGGGGDTSSVKSRTGASKDR
PQGRRGGRESAADASVSGGTGLPGMEGYSSAASPPPAGLELSGFATLSRG
RADREHQGLGSLDKLDVYGPGPGDRGSSSDDSHRRRGDGGKEGGSSRSRL
AAMSAHGRGAADERLGGGGGGGGGRSETDRSHDRSRDRSRDRSERGRSRG
RSERDASERDRSERDRSDRDRSERDRSDRDRSEREYARMADKGCRESSGR
RGDIGLRQSSSSTLGGIRRSPERGAQPKTAREGSSRWRAGSPSRNDSRGR
SSSARDSRYSKSGGGGGGGGGGSSAFSSGSADRLAGAAAATGHSGMGMGD
LGRGMGVSIIGGTRVLMPVSNMMEAVAAAAATSRGGDRHAGGRLDDRDGD
NRNRDRDRDRDREMRSSNRRAGGLGDDREDLWRGRSRSEDDQRRARRGRS
RSEDRGRRRETGGGGGGGSDGRRARGDSRDEATQALGQASPPQEEEPEEG
ELVIDPSTALPSPPAASASGSVRKSRWGNVETGPVLSVFSAGAGAAAGAA
AADVQGISRPSRDGGEGSIGDGDGEGNEGEAGLVGRGDDDEDGEIEGGTQ
DAKSPRRSPGASSSPRTQRSSSRSGAAAEAAASNAGAGDRSQPSQDHAGE
RSFARSSEPPADPKVTDPGSDNPESTISPADDDAKGSGRPGRAAAEETEM
PVESTAAAAAAAAAAGLGHAGTGTGRSSERAGGKSGGKRASDGNKSERRQ
SEVEDGEASSSPPAAASQPSSLERNSSSDRSLGSSGAAAAAAAAADGAAA
GRSRRRSSGDLGQFLRKGGQKRSGQPSSSPGTPAASDAATDSS
back to top

mRNA from alignment at H-canaliculatus_M_contigs7517:70..5248-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7517.1.1 ID=mRNA_H-canaliculatus_M_contigs7517.1.1|Name=mRNA_H-canaliculatus_M_contigs7517.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=5179bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7517:70..5248- (Hapterophycus canaliculatus Oshoro7m male)
ACGAGCTCGCCCAAGAAGCGCGTGCTCTCGAAAAGAGAGAGGGAGGAGGA GGAGAGGCGGCGGCGGAAAGAGGAGGCCCGGCGTGCCGGTAAGGAGAAGG GGAAGGTGAAGGCGCTGGAGAGGGAGCGACAGAAGAAGGAGAGAGAGGTC GAGCGGCAAAAGATGATCGCGGACTCGAGGAGGAAGAAGGCGGAGGAGGA GGCCGCCAGGAAGGAGAGGGACGCCAGGGACAAGGCGGACGAAGCCGCGC GCCGCGGTGGCGGCGGCGGCAAGGCCGAGGACGAACAGCCTCCGCAGCGA CAGCAGCAGCAGCAGCAGCAGCCGCCGCCGCCGCAGCAGGACCCCGCCGG CAGGCGAGATCGCGACAGGGACCGAAAGCGAGACCAGCCTTCCGCGAAGG CAGCCGCGCCAGAGGAAAGTCGCCGCGACCACCGCGACACCGCGAAATCC AGGGACAGGCACGATCGGGCGAGAGACCGAGAGGGGAGAGACAAGGGCGG TGGTTCGGACGCGAAGGCTTCCGCGAGGGGCACGGAGCGCAGCGGCGGCG GCGGGGGCGGCGGCAGCGGCCGCGAGAAGGAGGATAGTCGCCGTCCCGGC GCCCCGGGGGACAGCCGGGGAGGGAGATCAGACAAGGAGCAGCGGGGGAG GGGCAAAGAGGCGGATCGTTCCTCGGGGCGGCGCGAGAGGGATGATGGTC GACTGCCGCACAACCTCGACGACGGCCGTGAGGGGCCCCGCGCGGGGGTC GGCGTCGGGAGGGGGTACGAGGGCCAGGATGGGCAGCAGCGTGTCTTCGA GGACAAGTGGAGGGGGGACGGGGTGCGGAACGAGGGGTCATCGTCGCAGC GGGCAAGAGAATCGGACCTCGCCGCCGGCGGGGGAAGGCATAAGCTCGAC AGCAGGGAACGCGGGGACGGAGAGAAGGCCGAGCGGAAGCGGAGGAGGAG CGACCCGAGTGAGCCGGAGGGGATCAGCGGCAGGCACGGCGGGGACAGGC ACTCCGACGAGTACGCCGAAGACGACCGGGGCAGCAGCCACCGCCCGAGC AAAAAGAAGAGCAAAAAGGACAAAAGGGATAGGAAGGACAAGAGAGGAGA CCGACCCCTGCCAGACTCCCTGCGGGCCGGCAGAGCAGGCAGCGAGGAAG CGTCGCGCGGCCGCAAGCGCTCGCGAGATCTTGGCGGGGCGGATCCGCAG GCGGAAGGTTACGCAGCCGCCGCCGTGCTCCGGAGCGAACCCTTTCGGCG CAGCTTGGATCCCCACAGGCAACGTCCGGAGCCGGAGTCGGGCCGCAACG GCGGTAGCGGCGAGCTTAGAGGCGTCCCTCGACAATCATCGGCGCGCTCC AGGGCAGACTCCGACCTGTCGCCGAGGAGAGGCGATCGCCGGGATAGATC AGAGAAGCGTGTCAGGCGTGGTGGTGGCGTAGATGACGGCGGCGGCGGCG GCGGTGACACCTCGAGCGTCAAGAGCCGAACAGGTGCCAGCAAGGATCGG CCACAAGGGCGCCGGGGCGGGCGCGAGTCGGCGGCAGATGCCTCTGTGTC CGGCGGCACCGGTCTGCCCGGAATGGAAGGGTACAGCTCGGCGGCCTCGC CGCCCCCTGCAGGCTTGGAGCTCAGCGGCTTCGCAACTTTGAGCCGAGGG CGCGCCGACCGCGAGCACCAGGGTCTCGGAAGTCTCGACAAGCTGGACGT CTATGGTCCCGGACCCGGCGACAGGGGAAGCTCCTCGGACGACAGCCACA GGAGGAGGGGGGACGGCGGAAAGGAAGGCGGGAGCTCCCGCTCACGCTTG GCCGCCATGAGTGCGCACGGGAGGGGCGCGGCCGATGAGCGTCTCGGCGG CGGCGGCGGCGGCGGCGGTGGCAGGTCCGAGACGGATCGCTCTCACGATC GCTCGCGGGATCGGTCGAGGGATCGATCCGAGAGAGGTCGCTCGAGGGGT CGATCAGAGAGGGATGCGTCAGAGAGGGATCGCTCAGAAAGGGACCGCTC GGACAGGGACCGTTCCGAAAGAGACCGCTCGGACAGGGATCGCTCGGAGC GTGAATACGCGCGAATGGCGGACAAGGGGTGCAGGGAATCGTCGGGGCGC CGTGGGGATATCGGTTTGCGCCAGTCGAGCTCGTCCACCGTGAGTCGAAA TCCATCGATCATGTCGATTTCATGTCTGTCACACCTTGGGAACGGAACAG CAGTGGGACTTCGCGCTTATGTTGTGAGCCCTCTTGTGCGAGCCGGTCAT CGGAAATCCGTTCCTTTTCCTATTGTTTTCTTCGGGACATGGAGGACAGC AGTTGTCTCACCCAATAAGCGATGTTTGATAAGCGGGCGTCGATGCCAAA CCGAACCGGCACGAGGTTTGCTGCCGGGAGCTCGGGCCGGCGCGAGGCAC GTGCCGAGCGAGCACCATCAGCGTTTAGGGGGCGATGGAACCAGCAACAA AGCGCTTGGATCAGAAAAAAAGCCCCGGCACTCGGCAGCCTTTATTTTCG CCCGTCCGTTTGTGCCTTCGTCTCCTTCTAGACCACTCCGCGGCGGCCAC CGAGCCAAACTCTCCGCACTCCTCGGCCCTCCTCGCTGCCTGCCTCATCC CCGTGCCTTGCCTCCCCACCGTCTCCCATTTCAACCCTCCGACCAGCTTG GCGGGATTCGCAGGTCTCCGGAGAGAGGGGCGCAACCCAAGACCGCGCGG GAAGGGTCGAGCCGCTGGCGCGCCGGGTCCCCAAGCAGAAACGATTCAAG GGGGCGCTCGTCCAGCGCTCGCGACTCGCGGTACTCAAAGAGCGGCGGCG GCGGCGGCGGCGGCGGCGGCGGGAGCTCGGCTTTCTCTTCTGGCAGCGCC GACCGGCTGGCGGGGGCGGCGGCGGCGACGGGTCACTCGGGCATGGGGAT GGGCGACCTGGGCAGGGGGATGGGCGTGTCGATCATCGGAGGGACTCGCG TCCTCATGCCCGTCTCGAACATGATGGAGGCGGTGGCGGCGGCCGCGGCG ACCTCCCGCGGCGGCGACCGTCACGCCGGCGGCAGGCTCGACGACCGCGA CGGCGACAACCGCAATCGCGATCGCGACCGCGATCGCGACCGCGAGATGC GGAGCAGCAACAGGCGTGCGGGGGGACTGGGCGACGACCGTGAAGACCTC TGGCGCGGGCGGTCGCGCTCCGAGGACGACCAACGCCGTGCGCGCAGAGG GAGGAGTCGCTCGGAGGATCGCGGCCGGCGCAGAGAGACCGGCGGCGGCG GCGGGGGTGGCAGCGACGGCCGCAGGGCCAGGGGCGATAGCAGGGACGAG GCGACGCAGGCGCTGGGGCAAGCGTCGCCGCCGCAGGAAGAGGAGCCGGA GGAGGGGGAGCTGGTCATCGACCCTTCGACAGCGCTGCCCAGCCCGCCGG CGGCCTCGGCGTCCGGCTCGGTGAGGAAGTCCCGCTGGGGGAACGTGGAG ACGGGGCCGGTGTTGTCGGTGTTTTCGTCGTTTGCGTCGGGTACGGGCAG GAACGAGGGCCCTAGGAGAAGCCACGGCGTCGGTGGTGCTGGTGCTAGTG CTGGTGCTGGTGCTGCCGCTGGTGCTGCCGCCGCGGACGTCCAGGGAATC TCACGACCATCTCGCGACGGAGGGGAAGGCTCCATCGGGGACGGGGACGG GGAAGGAAACGAGGGCGAAGCGGGTCTCGTGGGGCGCGGGGATGATGACG AGGACGGAGAGATCGAGGGGGGAACGCAAGGTATGGAGGGGGTTGGTGCG GCACGTACGCGAGAGATCCGGCGGGAGCTGAGTCGTTTCCAGCCTTTTGT TGCGCGGCGACGTTTTTTGAAGTAGGTGTCCTTTGCCGCCGCGGATTGCC TTTTTCGAGGGCGAAATGCGATGAGGCGTGCGTCGTAAGAGGCGGTACAG ATGCGGCTCGAGAATAAAAGCGCGTGCTTATTGAAGCATTCCGTCGGGTT CTCGTGTGGTCTTCTTGCCTCGCCGGTCCTAGCGTCGCATTGCGTTCGTT GCGGCGGGATTGCGCACTGTCGGGCGCTCGACCATATGCCCAGAGGCTGG AAAAAGTCGTCGCTCTGGAAAGCACCACACGCGCGCTCTTAGCGTGATTT CGTCAGGACGTGCAACCTCTGTTGTGATGTGCCCTTGTATTCGAACAACG CGCGTGTTGCTTGAATGGTCACCCCCCATCGAGCGCACGCATGTCATGTC GTGAGCTCACTTTCACCGGTGACGTTTCTCTTTTTTTCTCTCGTCTTGAG GTCCATGCCAAGAAATCACGAATGCTGCGGTGACGCACGCACGGTACACA CGTAGCCGACCGCGCCCGAAGGTGGTCTTAACGCACATCTTCTGCGCCCT TCCCACCGCCGCAGAAAACATGGACGCGAGGGGAGACGCGAAATCTCCCC GCAGGTCACCGGGCGCGTCCTCGTCGCCGCGGACGCAGAGGTCGAGTTCG AGGAGCGGGGCGGCAGCGGAGGCGGCGGCTTCGAACGCGGGAGCGGGCGA CCGGTCGCAGCCCTCGCAGGATCACGCAGGTGAAAGGTCTTTCGCGCGAT CGTCGGAGCCCCCAGCAGACCCGAAGGTCACGGATCCCGGTTCGGACAAC CCGGAGAGCACGATTTCGCCGGCTGACGACGACGCCAAAGGGTCAGGAAG GCCGGGACGCGCGGCCGCGGAGGAGACGGAGATGCCAGTAGAAAGCACCG CGGCGGCGGCGGCGGCGGCGGCGGCGGTGGCGGGGGAAACCGAAGAAGAT GGTGTTTCGCCTACCGCACGCGGCCATACCAGGGTCGCGAAGGCGGGGCT CGGGCACGCGGGCACGGGCACGGGGAGGTCGAGCGAACGCGCCGGCGGGA AGTCCGGCGGCAAAAGGGCGAGCGACGGCAACAAGAGCGAGCGGCGGCAG TCCGAAGTAGAAGATGGGGAGGCCTCCTCCTCTCCTCCGGCGGCGGCGTC CCAGCCCTCTTCTCTCGAGAGGAACAGCAGTTCCGACAGGTCGTTGGGGT CAAGCGGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGACGGGGCGGCGGCG GGGCGCAGCAGGCGGCGCTCCTCCGGCGACTTGGGGCAGTTCCTCCGGAA GGGGGGCCAGAAAAGGTCGGGACAGCCGTCCTCCTCACCAGGCACCCCCG CAGCCTCCGATGCTGCCACCGACTCCAGC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7517:70..5248-

>mRNA_H-canaliculatus_M_contigs7517.1.1 ID=mRNA_H-canaliculatus_M_contigs7517.1.1|Name=mRNA_H-canaliculatus_M_contigs7517.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=3879bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7517:70..5248- (Hapterophycus canaliculatus Oshoro7m male)
ACGAGCTCGCCCAAGAAGCGCGTGCTCTCGAAAAGAGAGAGGGAGGAGGA
GGAGAGGCGGCGGCGGAAAGAGGAGGCCCGGCGTGCCGGTAAGGAGAAGG
GGAAGGTGAAGGCGCTGGAGAGGGAGCGACAGAAGAAGGAGAGAGAGGTC
GAGCGGCAAAAGATGATCGCGGACTCGAGGAGGAAGAAGGCGGAGGAGGA
GGCCGCCAGGAAGGAGAGGGACGCCAGGGACAAGGCGGACGAAGCCGCGC
GCCGCGGTGGCGGCGGCGGCAAGGCCGAGGACGAACAGCCTCCGCAGCGA
CAGCAGCAGCAGCAGCAGCAGCCGCCGCCGCCGCAGCAGGACCCCGCCGG
CAGGCGAGATCGCGACAGGGACCGAAAGCGAGACCAGCCTTCCGCGAAGG
CAGCCGCGCCAGAGGAAAGTCGCCGCGACCACCGCGACACCGCGAAATCC
AGGGACAGGCACGATCGGGCGAGAGACCGAGAGGGGAGAGACAAGGGCGG
TGGTTCGGACGCGAAGGCTTCCGCGAGGGGCACGGAGCGCAGCGGCGGCG
GCGGGGGCGGCGGCAGCGGCCGCGAGAAGGAGGATAGTCGCCGTCCCGGC
GCCCCGGGGGACAGCCGGGGAGGGAGATCAGACAAGGAGCAGCGGGGGAG
GGGCAAAGAGGCGGATCGTTCCTCGGGGCGGCGCGAGAGGGATGATGGTC
GACTGCCGCACAACCTCGACGACGGCCGTGAGGGGCCCCGCGCGGGGGTC
GGCGTCGGGAGGGGGTACGAGGGCCAGGATGGGCAGCAGCGTGTCTTCGA
GGACAAGTGGAGGGGGGACGGGGTGCGGAACGAGGGGTCATCGTCGCAGC
GGGCAAGAGAATCGGACCTCGCCGCCGGCGGGGGAAGGCATAAGCTCGAC
AGCAGGGAACGCGGGGACGGAGAGAAGGCCGAGCGGAAGCGGAGGAGGAG
CGACCCGAGTGAGCCGGAGGGGATCAGCGGCAGGCACGGCGGGGACAGGC
ACTCCGACGAGTACGCCGAAGACGACCGGGGCAGCAGCCACCGCCCGAGC
AAAAAGAAGAGCAAAAAGGACAAAAGGGATAGGAAGGACAAGAGAGGAGA
CCGACCCCTGCCAGACTCCCTGCGGGCCGGCAGAGCAGGCAGCGAGGAAG
CGTCGCGCGGCCGCAAGCGCTCGCGAGATCTTGGCGGGGCGGATCCGCAG
GCGGAAGGTTACGCAGCCGCCGCCGTGCTCCGGAGCGAACCCTTTCGGCG
CAGCTTGGATCCCCACAGGCAACGTCCGGAGCCGGAGTCGGGCCGCAACG
GCGGTAGCGGCGAGCTTAGAGGCGTCCCTCGACAATCATCGGCGCGCTCC
AGGGCAGACTCCGACCTGTCGCCGAGGAGAGGCGATCGCCGGGATAGATC
AGAGAAGCGTGTCAGGCGTGGTGGTGGCGTAGATGACGGCGGCGGCGGCG
GCGGTGACACCTCGAGCGTCAAGAGCCGAACAGGTGCCAGCAAGGATCGG
CCACAAGGGCGCCGGGGCGGGCGCGAGTCGGCGGCAGATGCCTCTGTGTC
CGGCGGCACCGGTCTGCCCGGAATGGAAGGGTACAGCTCGGCGGCCTCGC
CGCCCCCTGCAGGCTTGGAGCTCAGCGGCTTCGCAACTTTGAGCCGAGGG
CGCGCCGACCGCGAGCACCAGGGTCTCGGAAGTCTCGACAAGCTGGACGT
CTATGGTCCCGGACCCGGCGACAGGGGAAGCTCCTCGGACGACAGCCACA
GGAGGAGGGGGGACGGCGGAAAGGAAGGCGGGAGCTCCCGCTCACGCTTG
GCCGCCATGAGTGCGCACGGGAGGGGCGCGGCCGATGAGCGTCTCGGCGG
CGGCGGCGGCGGCGGCGGTGGCAGGTCCGAGACGGATCGCTCTCACGATC
GCTCGCGGGATCGGTCGAGGGATCGATCCGAGAGAGGTCGCTCGAGGGGT
CGATCAGAGAGGGATGCGTCAGAGAGGGATCGCTCAGAAAGGGACCGCTC
GGACAGGGACCGTTCCGAAAGAGACCGCTCGGACAGGGATCGCTCGGAGC
GTGAATACGCGCGAATGGCGGACAAGGGGTGCAGGGAATCGTCGGGGCGC
CGTGGGGATATCGGTTTGCGCCAGTCGAGCTCGTCCACCCTTGGCGGGAT
TCGCAGGTCTCCGGAGAGAGGGGCGCAACCCAAGACCGCGCGGGAAGGGT
CGAGCCGCTGGCGCGCCGGGTCCCCAAGCAGAAACGATTCAAGGGGGCGC
TCGTCCAGCGCTCGCGACTCGCGGTACTCAAAGAGCGGCGGCGGCGGCGG
CGGCGGCGGCGGCGGGAGCTCGGCTTTCTCTTCTGGCAGCGCCGACCGGC
TGGCGGGGGCGGCGGCGGCGACGGGTCACTCGGGCATGGGGATGGGCGAC
CTGGGCAGGGGGATGGGCGTGTCGATCATCGGAGGGACTCGCGTCCTCAT
GCCCGTCTCGAACATGATGGAGGCGGTGGCGGCGGCCGCGGCGACCTCCC
GCGGCGGCGACCGTCACGCCGGCGGCAGGCTCGACGACCGCGACGGCGAC
AACCGCAATCGCGATCGCGACCGCGATCGCGACCGCGAGATGCGGAGCAG
CAACAGGCGTGCGGGGGGACTGGGCGACGACCGTGAAGACCTCTGGCGCG
GGCGGTCGCGCTCCGAGGACGACCAACGCCGTGCGCGCAGAGGGAGGAGT
CGCTCGGAGGATCGCGGCCGGCGCAGAGAGACCGGCGGCGGCGGCGGGGG
TGGCAGCGACGGCCGCAGGGCCAGGGGCGATAGCAGGGACGAGGCGACGC
AGGCGCTGGGGCAAGCGTCGCCGCCGCAGGAAGAGGAGCCGGAGGAGGGG
GAGCTGGTCATCGACCCTTCGACAGCGCTGCCCAGCCCGCCGGCGGCCTC
GGCGTCCGGCTCGGTGAGGAAGTCCCGCTGGGGGAACGTGGAGACGGGGC
CGGTGTTGTCGGTGTTTTCTGCTGGTGCTGGTGCTGCCGCTGGTGCTGCC
GCCGCGGACGTCCAGGGAATCTCACGACCATCTCGCGACGGAGGGGAAGG
CTCCATCGGGGACGGGGACGGGGAAGGAAACGAGGGCGAAGCGGGTCTCG
TGGGGCGCGGGGATGATGACGAGGACGGAGAGATCGAGGGGGGAACGCAA
GACGCGAAATCTCCCCGCAGGTCACCGGGCGCGTCCTCGTCGCCGCGGAC
GCAGAGGTCGAGTTCGAGGAGCGGGGCGGCAGCGGAGGCGGCGGCTTCGA
ACGCGGGAGCGGGCGACCGGTCGCAGCCCTCGCAGGATCACGCAGGTGAA
AGGTCTTTCGCGCGATCGTCGGAGCCCCCAGCAGACCCGAAGGTCACGGA
TCCCGGTTCGGACAACCCGGAGAGCACGATTTCGCCGGCTGACGACGACG
CCAAAGGGTCAGGAAGGCCGGGACGCGCGGCCGCGGAGGAGACGGAGATG
CCAGTAGAAAGCACCGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGGGCT
CGGGCACGCGGGCACGGGCACGGGGAGGTCGAGCGAACGCGCCGGCGGGA
AGTCCGGCGGCAAAAGGGCGAGCGACGGCAACAAGAGCGAGCGGCGGCAG
TCCGAAGTAGAAGATGGGGAGGCCTCCTCCTCTCCTCCGGCGGCGGCGTC
CCAGCCCTCTTCTCTCGAGAGGAACAGCAGTTCCGACAGGTCGTTGGGGT
CAAGCGGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGACGGGGCGGCGGCG
GGGCGCAGCAGGCGGCGCTCCTCCGGCGACTTGGGGCAGTTCCTCCGGAA
GGGGGGCCAGAAAAGGTCGGGACAGCCGTCCTCCTCACCAGGCACCCCCG
CAGCCTCCGATGCTGCCACCGACTCCAGC
back to top