mRNA_H-canaliculatus_M_contigs75169.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75169.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75169.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs75169.1.1 vs.
Match: Ribonucleoside-diphosphate (reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG29_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 2.870e-29
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1 
Query:    1 QGGGKRKGSIAVYLEPWHADIVAFLDLKKNHGNELERARDLFYAMWIPDLFMQ 159
            QGGGKRKGSIAVYLEPWHADIVAFLDLKKNHGNELERARDLFYAMWIPDLFMQ
Sbjct:  141 QGGGKRKGSIAVYLEPWHADIVAFLDLKKNHGNELERARDLFYAMWIPDLFMQ 193
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BLAST of mRNA_H-canaliculatus_M_contigs75169.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YIY6_9STRA)

HSP 1 Score: 108 bits (270), Expect = 2.120e-28
Identity = 46/53 (86.79%), Postives = 52/53 (98.11%), Query Frame = 1 
Query:    1 QGGGKRKGSIAVYLEPWHADIVAFLDLKKNHGNELERARDLFYAMWIPDLFMQ 159
            QGGGKRKGSIA+YLEPWHADI+AFLDL+KNHGNE +RARDLFYA+WIPDLFM+
Sbjct:   68 QGGGKRKGSIAIYLEPWHADIMAFLDLRKNHGNESDRARDLFYALWIPDLFME 120
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BLAST of mRNA_H-canaliculatus_M_contigs75169.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XSL7_9STRA)

HSP 1 Score: 104 bits (259), Expect = 7.210e-28
Identity = 43/53 (81.13%), Postives = 50/53 (94.34%), Query Frame = 1 
Query:    1 QGGGKRKGSIAVYLEPWHADIVAFLDLKKNHGNELERARDLFYAMWIPDLFMQ 159
            QGGGKRKGSIA+YLEPWH+DI  +LDL+KNHGNELERARDLFY +W+PDLFM+
Sbjct:   50 QGGGKRKGSIAIYLEPWHSDIFEWLDLRKNHGNELERARDLFYGLWVPDLFME 102
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BLAST of mRNA_H-canaliculatus_M_contigs75169.1.1 vs.
Match: Ribonucleoside-diphosphate (reductase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y7V4_9STRA)

HSP 1 Score: 111 bits (277), Expect = 3.340e-27
Identity = 49/53 (92.45%), Postives = 50/53 (94.34%), Query Frame = 1 
Query:    1 QGGGKRKGSIAVYLEPWHADIVAFLDLKKNHGNELERARDLFYAMWIPDLFMQ 159
            QGGGKRKGS AVYLEPWHADI AFLDLKKNHGNEL RARDLFYAMW+PDLFMQ
Sbjct:  288 QGGGKRKGSFAVYLEPWHADIFAFLDLKKNHGNELHRARDLFYAMWVPDLFMQ 340
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BLAST of mRNA_H-canaliculatus_M_contigs75169.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UDW6_9STRA)

HSP 1 Score: 103 bits (257), Expect = 4.490e-27
Identity = 42/53 (79.25%), Postives = 50/53 (94.34%), Query Frame = 1 
Query:    1 QGGGKRKGSIAVYLEPWHADIVAFLDLKKNHGNELERARDLFYAMWIPDLFMQ 159
            QGGGKRKGS A+Y+EPWHADI+ +LDL+KNHGNE+ERARDLFY +WIPDLFM+
Sbjct:   50 QGGGKRKGSFAIYIEPWHADIMQWLDLRKNHGNEMERARDLFYGLWIPDLFME 102
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BLAST of mRNA_H-canaliculatus_M_contigs75169.1.1 vs.
Match: Ribonucleoside-diphosphate (reductase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C161_THAPS)

HSP 1 Score: 109 bits (273), Expect = 1.160e-26
Identity = 47/53 (88.68%), Postives = 51/53 (96.23%), Query Frame = 1 
Query:    1 QGGGKRKGSIAVYLEPWHADIVAFLDLKKNHGNELERARDLFYAMWIPDLFMQ 159
            QGGGKRKGSIA Y+EPWHADI AFLDL+KNHGNE+ERARDLFYA+WIPDLFMQ
Sbjct:  288 QGGGKRKGSIAAYIEPWHADIFAFLDLRKNHGNEMERARDLFYALWIPDLFMQ 340
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BLAST of mRNA_H-canaliculatus_M_contigs75169.1.1 vs.
Match: Ribonucleoside-diphosphate (reductase (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MEZ0_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.440e-26
Identity = 48/53 (90.57%), Postives = 51/53 (96.23%), Query Frame = 1 
Query:    1 QGGGKRKGSIAVYLEPWHADIVAFLDLKKNHGNELERARDLFYAMWIPDLFMQ 159
            QGGGKRKGSIA+YLEPWHADIV FLDLKKNHGNE+ERARDLFYAMWI DLFM+
Sbjct:  204 QGGGKRKGSIAIYLEPWHADIVDFLDLKKNHGNEMERARDLFYAMWISDLFMK 256
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BLAST of mRNA_H-canaliculatus_M_contigs75169.1.1 vs.
Match: Hypothetical (protein n=2 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VB47_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.980e-26
Identity = 47/53 (88.68%), Postives = 52/53 (98.11%), Query Frame = 1 
Query:    1 QGGGKRKGSIAVYLEPWHADIVAFLDLKKNHGNELERARDLFYAMWIPDLFMQ 159
            QGGGKRKGSIAVYLEPWHADI+AFLDL+KNHGNE +RARDLFYA+WIPDLFM+
Sbjct:   93 QGGGKRKGSIAVYLEPWHADILAFLDLRKNHGNESDRARDLFYALWIPDLFME 145
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75169.1.1 vs.
Match: Ribonucleoside-diphosphate (reductase n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0CWX8_9ZZZZ)

HSP 1 Score: 108 bits (270), Expect = 2.950e-26
Identity = 46/53 (86.79%), Postives = 51/53 (96.23%), Query Frame = 1 
Query:    1 QGGGKRKGSIAVYLEPWHADIVAFLDLKKNHGNELERARDLFYAMWIPDLFMQ 159
            QGGGKR GSIA+YLEPWHADI+ FL+LKKNHGNELERARDLFY+MWIPDLFM+
Sbjct:  279 QGGGKRNGSIAIYLEPWHADIIEFLELKKNHGNELERARDLFYSMWIPDLFME 331
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75169.1.1 vs.
Match: Ribonucleoside-diphosphate (reductase (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R0K7_THAOC)

HSP 1 Score: 108 bits (270), Expect = 2.950e-26
Identity = 46/53 (86.79%), Postives = 51/53 (96.23%), Query Frame = 1 
Query:    1 QGGGKRKGSIAVYLEPWHADIVAFLDLKKNHGNELERARDLFYAMWIPDLFMQ 159
            QGGGKRKGSIA Y+EPWHADI AFLDL+KNHGNE+ERARDLFYA+WIPDLFM+
Sbjct:  346 QGGGKRKGSIAAYIEPWHADIFAFLDLRKNHGNEMERARDLFYALWIPDLFME 398
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75169.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Ribonucleoside-diphosphate2.870e-29100.00reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG... [more]
Hypothetical2.120e-2886.79protein (Fragment) n=1 Tax=Amphiprora paludosa Tax... [more]
Hypothetical7.210e-2881.13protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=... [more]
Ribonucleoside-diphosphate3.340e-2792.45reductase n=1 Tax=Pythium brassicum TaxID=1485010 ... [more]
Hypothetical4.490e-2779.25protein (Fragment) n=1 Tax=Pinguiococcus pyrenoido... [more]
Ribonucleoside-diphosphate1.160e-2688.68reductase n=1 Tax=Thalassiosira pseudonana TaxID=3... [more]
Ribonucleoside-diphosphate1.440e-2690.57reductase (Fragment) n=1 Tax=Spumella elongata Tax... [more]
Hypothetical1.980e-2688.68protein n=2 Tax=Grammatophora oceanica TaxID=21045... [more]
Ribonucleoside-diphosphate2.950e-2686.79reductase n=1 Tax=viral metagenome TaxID=1070528 R... [more]
Ribonucleoside-diphosphate2.950e-2686.79reductase (Fragment) n=1 Tax=Thalassiosira oceanic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75169contigH-canaliculatus_M_contigs75169:70..228 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LG29
Preferred nameRNR1
PFAMsATP-cone,Ribonuc_red_lgC,Ribonuc_red_lgN
Model size159
Max annot lvl2759|Eukaryota
KEGG rclassRC00613,RC01003
KEGG koko:K10807
KEGG ReactionR02017,R02019,R02024,R08363,R08364,R11893
KEGG Pathwayko00230,ko00240,ko00480,ko00983,ko01100,map00230,map00240,map00480,map00983,map01100
KEGG ModuleM00053
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004550,GO:0004748,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0005971,GO:0006139,GO:0006165,GO:0006213,GO:0006220,GO:0006221,GO:0006235,GO:0006240,GO:0006259,GO:0006260,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009116,GO:0009117,GO:0009119,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009165,GO:0009185,GO:0009186,GO:0009189,GO:0009193,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009218,GO:0009219,GO:0009221,GO:0009259,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0010035,GO:0010038,GO:0016301,GO:0016310,GO:0016491,GO:0016725,GO:0016728,GO:0016740,GO:0016772,GO:0016776,GO:0017076,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0019693,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0035639,GO:0036094,GO:0042221,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046062,GO:0046075,GO:0046131,GO:0046385,GO:0046483,GO:0046686,GO:0046704,GO:0046939,GO:0050896,GO:0051063,GO:0055086,GO:0055114,GO:0061731,GO:0071704,GO:0072527,GO:0072528,GO:0090304,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1902494,GO:1990204
Exons1
Evalue4.7e-30
EggNOG OGsCOG0209@1|root,KOG1112@2759|Eukaryota
EC1.17.4.1
Descriptionribonucleoside-diphosphate reductase activity
Cds size159
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854089.2799826-CDS-H-canaliculatus_M_contigs75169:69..2281696854089.2799826-CDS-H-canaliculatus_M_contigs75169:69..228Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75169 70..228 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75169.1.1prot_H-canaliculatus_M_contigs75169.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75169 70..228 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75169.1.1

>prot_H-canaliculatus_M_contigs75169.1.1 ID=prot_H-canaliculatus_M_contigs75169.1.1|Name=mRNA_H-canaliculatus_M_contigs75169.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=53bp
QGGGKRKGSIAVYLEPWHADIVAFLDLKKNHGNELERARDLFYAMWIPDL
FMQ
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mRNA from alignment at H-canaliculatus_M_contigs75169:70..228+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75169.1.1 ID=mRNA_H-canaliculatus_M_contigs75169.1.1|Name=mRNA_H-canaliculatus_M_contigs75169.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=159bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75169:70..228+ (Hapterophycus canaliculatus Oshoro7m male)
CAGGGTGGCGGCAAGCGCAAGGGTTCCATCGCCGTGTACCTGGAGCCGTG
GCACGCCGACATCGTCGCCTTCCTAGACCTGAAGAAGAACCACGGGAACG
AGCTGGAGCGCGCGAGGGACCTCTTCTACGCCATGTGGATCCCGGACCTC
TTCATGCAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75169:70..228+

>mRNA_H-canaliculatus_M_contigs75169.1.1 ID=mRNA_H-canaliculatus_M_contigs75169.1.1|Name=mRNA_H-canaliculatus_M_contigs75169.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=159bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75169:70..228+ (Hapterophycus canaliculatus Oshoro7m male)
CAGGGTGGCGGCAAGCGCAAGGGTTCCATCGCCGTGTACCTGGAGCCGTG
GCACGCCGACATCGTCGCCTTCCTAGACCTGAAGAAGAACCACGGGAACG
AGCTGGAGCGCGCGAGGGACCTCTTCTACGCCATGTGGATCCCGGACCTC
TTCATGCAG
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