mRNA_H-canaliculatus_M_contigs7516.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7516.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7516.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7516.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K031_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 1.770e-50
Identity = 77/82 (93.90%), Postives = 80/82 (97.56%), Query Frame = 1
Query:   25 RTDALPGEKPKGIKTHLRNMLIVPEMIGSIVGIYNGKSMNGVEIKPEMVGHYLGEFSITYKPVRHGRPGIGSTNSSRFIPLN 270
            + +A PGEKP+GIKTHLRNMLIVPEMIGSIVGIYNGKSMNGVEIKPEMVGHYLGEFSITYKPVRHGRPGIGSTNSSRFIPLN
Sbjct:  104 KKNAAPGEKPRGIKTHLRNMLIVPEMIGSIVGIYNGKSMNGVEIKPEMVGHYLGEFSITYKPVRHGRPGIGSTNSSRFIPLN 185          
BLAST of mRNA_H-canaliculatus_M_contigs7516.1.1 vs.
Match: Ribosomal (protein S19-domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFH0_9STRA)

HSP 1 Score: 150 bits (378), Expect = 1.100e-44
Identity = 69/82 (84.15%), Postives = 76/82 (92.68%), Query Frame = 1
Query:   25 RTDALPGEKPKGIKTHLRNMLIVPEMIGSIVGIYNGKSMNGVEIKPEMVGHYLGEFSITYKPVRHGRPGIGSTNSSRFIPLN 270
            + +A P E+PKGIKTHLRNMLIVPEMIGS+VGIYNGKS NG+EIKPEMVG YLGEFSITYKPVRHGRPGIGST S+RFIPL+
Sbjct:   71 KKEAAPMERPKGIKTHLRNMLIVPEMIGSVVGIYNGKSFNGIEIKPEMVGMYLGEFSITYKPVRHGRPGIGSTASARFIPLS 152          
BLAST of mRNA_H-canaliculatus_M_contigs7516.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4JK08_9EUKA)

HSP 1 Score: 149 bits (377), Expect = 1.220e-44
Identity = 65/81 (80.25%), Postives = 75/81 (92.59%), Query Frame = 1
Query:   25 RTDALPGEKPKGIKTHLRNMLIVPEMIGSIVGIYNGKSMNGVEIKPEMVGHYLGEFSITYKPVRHGRPGIGSTNSSRFIPL 267
            + +A  GE+P GIKTHLRNM+IVPEMIGS+VG+YNGK  NG+EIKPEM+GHYLGEFSITYKPV+HGRPGIG+TNSSRFIPL
Sbjct:   63 KREAAVGERPVGIKTHLRNMIIVPEMIGSVVGVYNGKDFNGIEIKPEMIGHYLGEFSITYKPVKHGRPGIGATNSSRFIPL 143          
BLAST of mRNA_H-canaliculatus_M_contigs7516.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R5G6_9STRA)

HSP 1 Score: 149 bits (377), Expect = 1.220e-44
Identity = 65/75 (86.67%), Postives = 74/75 (98.67%), Query Frame = 1
Query:   43 GEKPKGIKTHLRNMLIVPEMIGSIVGIYNGKSMNGVEIKPEMVGHYLGEFSITYKPVRHGRPGIGSTNSSRFIPL 267
            GE+P+GIKTH+RNM+IVPEMIGS+VG+YNGKS NG+EIKPEMVGHYLG+FSITYKPVRHGRPGIG+TNSSRFIPL
Sbjct:   69 GERPEGIKTHVRNMIIVPEMIGSVVGVYNGKSFNGIEIKPEMVGHYLGDFSITYKPVRHGRPGIGATNSSRFIPL 143          
BLAST of mRNA_H-canaliculatus_M_contigs7516.1.1 vs.
Match: 40S (ribosomal protein S15-like n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D1C93)

HSP 1 Score: 146 bits (369), Expect = 4.350e-44
Identity = 64/89 (71.91%), Postives = 78/89 (87.64%), Query Frame = 1
Query:    1 CLHAPLFVRTDALPGEKPKGIKTHLRNMLIVPEMIGSIVGIYNGKSMNGVEIKPEMVGHYLGEFSITYKPVRHGRPGIGSTNSSRFIPL 267
            C+   LF + +A PGEKP+ +KTHLRNM+IVPEMIGS+VG+YNGK+ N VEIKPEM+ HYL EFSI+YKPV+HGRPGIG+T+SSRFIPL
Sbjct:    5 CVMCSLFQKREAPPGEKPEIVKTHLRNMIIVPEMIGSVVGVYNGKTFNTVEIKPEMISHYLAEFSISYKPVKHGRPGIGATHSSRFIPL 93          
BLAST of mRNA_H-canaliculatus_M_contigs7516.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5FL74_ZINOF)

HSP 1 Score: 147 bits (370), Expect = 9.530e-44
Identity = 65/89 (73.03%), Postives = 78/89 (87.64%), Query Frame = 1
Query:    1 CLHAPLFVRTDALPGEKPKGIKTHLRNMLIVPEMIGSIVGIYNGKSMNGVEIKPEMVGHYLGEFSITYKPVRHGRPGIGSTNSSRFIPL 267
            C    L ++ DA PGEKP+ ++THLRNM+IVPEMIGSIVG+YNGK+ N VEIKPEM+GHYL EFSI+YKPV+HGRPGIG+T+SSRFIPL
Sbjct:   42 CASWSLTMKRDAPPGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPL 130          
BLAST of mRNA_H-canaliculatus_M_contigs7516.1.1 vs.
Match: Ribosomal (protein S19 n=5 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1XXF2_9FUNG)

HSP 1 Score: 147 bits (370), Expect = 1.760e-43
Identity = 63/81 (77.78%), Postives = 75/81 (92.59%), Query Frame = 1
Query:   25 RTDALPGEKPKGIKTHLRNMLIVPEMIGSIVGIYNGKSMNGVEIKPEMVGHYLGEFSITYKPVRHGRPGIGSTNSSRFIPL 267
            + +A P EKP+ +KTHLRNM+IVPEMIGS+VG+YNGK+ N VEIKPEM+GHYLGEFSITYKPV+HGRPGIG+TNSSRF+PL
Sbjct:   70 KKEAAPNEKPETVKTHLRNMIIVPEMIGSVVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATNSSRFVPL 150          
BLAST of mRNA_H-canaliculatus_M_contigs7516.1.1 vs.
Match: 40S (ribosomal protein S15 n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5INS0_9HYME)

HSP 1 Score: 145 bits (367), Expect = 1.830e-43
Identity = 64/81 (79.01%), Postives = 75/81 (92.59%), Query Frame = 1
Query:   25 RTDALPGEKPKGIKTHLRNMLIVPEMIGSIVGIYNGKSMNGVEIKPEMVGHYLGEFSITYKPVRHGRPGIGSTNSSRFIPL 267
            + DA P EKP+ +KTHLRNM+IVPEM+GSIVG+YNGK+ N VEIKPEM+GHYLGEFSITYKPV+HGRPGIG+T+SSRFIPL
Sbjct:   37 KKDAPPNEKPEIVKTHLRNMVIVPEMVGSIVGVYNGKAFNSVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPL 117          
BLAST of mRNA_H-canaliculatus_M_contigs7516.1.1 vs.
Match: Uncharacterized (protein n=5 Tax=Absidia TaxID=4828 RepID=A0A163J6W9_ABSGL)

HSP 1 Score: 145 bits (367), Expect = 4.320e-43
Identity = 64/81 (79.01%), Postives = 75/81 (92.59%), Query Frame = 1
Query:   25 RTDALPGEKPKGIKTHLRNMLIVPEMIGSIVGIYNGKSMNGVEIKPEMVGHYLGEFSITYKPVRHGRPGIGSTNSSRFIPL 267
            +T+A  GEKP  +KTHLRNM+IVPEMIGS+VG+YNGK+ N VEI+PEMVGHYLGEFSITYKPVRHGRPGIG+T+SSRF+PL
Sbjct:   65 KTEAPSGEKPSTVKTHLRNMIIVPEMIGSVVGVYNGKTFNQVEIRPEMVGHYLGEFSITYKPVRHGRPGIGATHSSRFVPL 145          
BLAST of mRNA_H-canaliculatus_M_contigs7516.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Chara braunii TaxID=69332 RepID=A0A388K1Y8_CHABU)

HSP 1 Score: 145 bits (367), Expect = 5.190e-43
Identity = 63/81 (77.78%), Postives = 76/81 (93.83%), Query Frame = 1
Query:   25 RTDALPGEKPKGIKTHLRNMLIVPEMIGSIVGIYNGKSMNGVEIKPEMVGHYLGEFSITYKPVRHGRPGIGSTNSSRFIPL 267
            R +A PGEKP+ ++THLRNM+IVPEMIG+I+G+YNGK+ N VEIKPEM+GHYLGEFSITYKPV+HGRPGIG+T+SSRFIPL
Sbjct:   71 RREAPPGEKPEPVRTHLRNMIIVPEMIGTIIGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPL 151          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7516.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized1.770e-5093.90protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5... [more]
Ribosomal1.100e-4484.15protein S19-domain-containing protein n=2 Tax=Trib... [more]
Hypothetical1.220e-4480.25protein n=1 Tax=Paramoeba aestuarina TaxID=180227 ... [more]
Hypothetical1.220e-4486.67protein n=1 Tax=Rhizochromulina marina TaxID=10348... [more]
40S4.350e-4471.91ribosomal protein S15-like n=1 Tax=Olea europaea v... [more]
Uncharacterized9.530e-4473.03protein n=1 Tax=Zingiber officinale TaxID=94328 Re... [more]
Ribosomal1.760e-4377.78protein S19 n=5 Tax=Basidiobolus meristosporus CBS... [more]
40S1.830e-4379.01ribosomal protein S15 n=1 Tax=Trichogramma brassic... [more]
Uncharacterized4.320e-4379.01protein n=5 Tax=Absidia TaxID=4828 RepID=A0A163J6W... [more]
Uncharacterized5.190e-4377.78protein n=2 Tax=Chara braunii TaxID=69332 RepID=A0... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7516contigH-canaliculatus_M_contigs7516:1404..2423 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FXQ7
Preferred nameRPS15
PFAMsRibosomal_S19
Model size273
Max annot lvl2759|Eukaryota
KEGG koko:K02958
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.34e-52
EggNOG OGsCOG0185@1|root,KOG0898@2759|Eukaryota
Descriptionribosomal small subunit assembly
Cds size273
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854089.2318003-CDS-H-canaliculatus_M_contigs7516:1403..15331696854089.2318003-CDS-H-canaliculatus_M_contigs7516:1403..1533Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7516 1404..1533 +
1696854089.2433653-CDS-H-canaliculatus_M_contigs7516:2280..24231696854089.2433653-CDS-H-canaliculatus_M_contigs7516:2280..2423Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7516 2281..2423 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7516.1.1prot_H-canaliculatus_M_contigs7516.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7516 1404..2423 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7516.1.1

>prot_H-canaliculatus_M_contigs7516.1.1 ID=prot_H-canaliculatus_M_contigs7516.1.1|Name=mRNA_H-canaliculatus_M_contigs7516.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=91bp
CLHAPLFVRTDALPGEKPKGIKTHLRNMLIVPEMIGSIVGIYNGKSMNGV
EIKPEMVGHYLGEFSITYKPVRHGRPGIGSTNSSRFIPLN*
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mRNA from alignment at H-canaliculatus_M_contigs7516:1404..2423+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7516.1.1 ID=mRNA_H-canaliculatus_M_contigs7516.1.1|Name=mRNA_H-canaliculatus_M_contigs7516.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1020bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7516:1404..2423+ (Hapterophycus canaliculatus Oshoro7m male)
TGTCTCCATGCTCCCCTGTTTGTCCGAACAGACGCCCTCCCCGGAGAGAA GCCGAAGGGTATCAAGACCCACCTGCGGAACATGCTCATCGTGCCGGAGA TGATCGGCTCCATCGTCGGCATCTACAACGGTGGGTAGCTCAGGACTACT GCATCGTGTCGAAGAAAATTTTCATCGTACTTGCTCGCCGGGGAATCCAG GGGGAGAGGGCAGGCGGGGAGCAAGAGTACATGACTTGCCGTCTTTCTAT CGTATTGTACGAGGGGTGCGCGACATCTCGTCCTGACGTGCTGAGTATCG AACAGCACGTCCCTTTTTAGCCAGCCCCTGTACTAACACTGACAGGGATG ACTCTGGATCAAAGAACTGCAAAGTGGTTCGTAATGATCAGGACGGAAAG ATGTCTTGACGGTAACGGATAGTTTTTGCTTTCTGCCATGCAGCTAATGG CCGTCCTCCTTTTCTCTCGTCAATTCTTGTCTTGGAAAAGTACATCAGGC GGGGTTGGTTTTCGATTGAAAATCGATGTACAGCTCGGCGTCGGTTGCGA TGGTGGGATCGCGCGTGTTTGCCCTGTTCCATCTCTCTGTGCTCGTTCTT TTTTTGATTCGAATACACGGCGAGGAATATTGCAAGGCTGGCCTGGTCTA CAATCGTGTTTTCCTCTCCGACCGTGTTGGGAATGATGTGGAAAAGCGTA TCCTGCCTGGTAGTACTTGCGCGCCCTCTTTCGGCCGTCCATCTATGCCC TGGGCGGGCCCATTGTAAAAAAGAAACGGAACGCTCCCCACCCTTGCATC GTTACCAAGAAACGCTTCCCCTGTCGCCTGCTGTGCCCTTATCTAACTCA ACCGAATCAAATCAACTTTGTGACCAGGTAAGTCGATGAACGGCGTGGAA ATCAAGCCCGAGATGGTCGGACACTACCTCGGCGAGTTCTCCATCACCTA CAAGCCCGTACGCCACGGACGGCCGGGGATCGGGTCGACCAACTCATCCC GTTTCATCCCGCTCAACTAA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7516:1404..2423+

>mRNA_H-canaliculatus_M_contigs7516.1.1 ID=mRNA_H-canaliculatus_M_contigs7516.1.1|Name=mRNA_H-canaliculatus_M_contigs7516.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=273bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7516:1404..2423+ (Hapterophycus canaliculatus Oshoro7m male)
TGTCTCCATGCTCCCCTGTTTGTCCGAACAGACGCCCTCCCCGGAGAGAA
GCCGAAGGGTATCAAGACCCACCTGCGGAACATGCTCATCGTGCCGGAGA
TGATCGGCTCCATCGTCGGCATCTACAACGGTAAGTCGATGAACGGCGTG
GAAATCAAGCCCGAGATGGTCGGACACTACCTCGGCGAGTTCTCCATCAC
CTACAAGCCCGTACGCCACGGACGGCCGGGGATCGGGTCGACCAACTCAT
CCCGTTTCATCCCGCTCAACTAA
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