mRNA_H-canaliculatus_M_contigs7516.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
|
Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7516.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K031_9PHAE) HSP 1 Score: 166 bits (419), Expect = 1.770e-50 Identity = 77/82 (93.90%), Postives = 80/82 (97.56%), Query Frame = 1
Query: 25 RTDALPGEKPKGIKTHLRNMLIVPEMIGSIVGIYNGKSMNGVEIKPEMVGHYLGEFSITYKPVRHGRPGIGSTNSSRFIPLN 270
+ +A PGEKP+GIKTHLRNMLIVPEMIGSIVGIYNGKSMNGVEIKPEMVGHYLGEFSITYKPVRHGRPGIGSTNSSRFIPLN
Sbjct: 104 KKNAAPGEKPRGIKTHLRNMLIVPEMIGSIVGIYNGKSMNGVEIKPEMVGHYLGEFSITYKPVRHGRPGIGSTNSSRFIPLN 185
BLAST of mRNA_H-canaliculatus_M_contigs7516.1.1 vs.
Match: Ribosomal (protein S19-domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFH0_9STRA) HSP 1 Score: 150 bits (378), Expect = 1.100e-44 Identity = 69/82 (84.15%), Postives = 76/82 (92.68%), Query Frame = 1
Query: 25 RTDALPGEKPKGIKTHLRNMLIVPEMIGSIVGIYNGKSMNGVEIKPEMVGHYLGEFSITYKPVRHGRPGIGSTNSSRFIPLN 270
+ +A P E+PKGIKTHLRNMLIVPEMIGS+VGIYNGKS NG+EIKPEMVG YLGEFSITYKPVRHGRPGIGST S+RFIPL+
Sbjct: 71 KKEAAPMERPKGIKTHLRNMLIVPEMIGSVVGIYNGKSFNGIEIKPEMVGMYLGEFSITYKPVRHGRPGIGSTASARFIPLS 152
BLAST of mRNA_H-canaliculatus_M_contigs7516.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4JK08_9EUKA) HSP 1 Score: 149 bits (377), Expect = 1.220e-44 Identity = 65/81 (80.25%), Postives = 75/81 (92.59%), Query Frame = 1
Query: 25 RTDALPGEKPKGIKTHLRNMLIVPEMIGSIVGIYNGKSMNGVEIKPEMVGHYLGEFSITYKPVRHGRPGIGSTNSSRFIPL 267
+ +A GE+P GIKTHLRNM+IVPEMIGS+VG+YNGK NG+EIKPEM+GHYLGEFSITYKPV+HGRPGIG+TNSSRFIPL
Sbjct: 63 KREAAVGERPVGIKTHLRNMIIVPEMIGSVVGVYNGKDFNGIEIKPEMIGHYLGEFSITYKPVKHGRPGIGATNSSRFIPL 143
BLAST of mRNA_H-canaliculatus_M_contigs7516.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R5G6_9STRA) HSP 1 Score: 149 bits (377), Expect = 1.220e-44 Identity = 65/75 (86.67%), Postives = 74/75 (98.67%), Query Frame = 1
Query: 43 GEKPKGIKTHLRNMLIVPEMIGSIVGIYNGKSMNGVEIKPEMVGHYLGEFSITYKPVRHGRPGIGSTNSSRFIPL 267
GE+P+GIKTH+RNM+IVPEMIGS+VG+YNGKS NG+EIKPEMVGHYLG+FSITYKPVRHGRPGIG+TNSSRFIPL
Sbjct: 69 GERPEGIKTHVRNMIIVPEMIGSVVGVYNGKSFNGIEIKPEMVGHYLGDFSITYKPVRHGRPGIGATNSSRFIPL 143
BLAST of mRNA_H-canaliculatus_M_contigs7516.1.1 vs.
Match: 40S (ribosomal protein S15-like n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D1C93) HSP 1 Score: 146 bits (369), Expect = 4.350e-44 Identity = 64/89 (71.91%), Postives = 78/89 (87.64%), Query Frame = 1
Query: 1 CLHAPLFVRTDALPGEKPKGIKTHLRNMLIVPEMIGSIVGIYNGKSMNGVEIKPEMVGHYLGEFSITYKPVRHGRPGIGSTNSSRFIPL 267
C+ LF + +A PGEKP+ +KTHLRNM+IVPEMIGS+VG+YNGK+ N VEIKPEM+ HYL EFSI+YKPV+HGRPGIG+T+SSRFIPL
Sbjct: 5 CVMCSLFQKREAPPGEKPEIVKTHLRNMIIVPEMIGSVVGVYNGKTFNTVEIKPEMISHYLAEFSISYKPVKHGRPGIGATHSSRFIPL 93
BLAST of mRNA_H-canaliculatus_M_contigs7516.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5FL74_ZINOF) HSP 1 Score: 147 bits (370), Expect = 9.530e-44 Identity = 65/89 (73.03%), Postives = 78/89 (87.64%), Query Frame = 1
Query: 1 CLHAPLFVRTDALPGEKPKGIKTHLRNMLIVPEMIGSIVGIYNGKSMNGVEIKPEMVGHYLGEFSITYKPVRHGRPGIGSTNSSRFIPL 267
C L ++ DA PGEKP+ ++THLRNM+IVPEMIGSIVG+YNGK+ N VEIKPEM+GHYL EFSI+YKPV+HGRPGIG+T+SSRFIPL
Sbjct: 42 CASWSLTMKRDAPPGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPL 130
BLAST of mRNA_H-canaliculatus_M_contigs7516.1.1 vs.
Match: Ribosomal (protein S19 n=5 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1XXF2_9FUNG) HSP 1 Score: 147 bits (370), Expect = 1.760e-43 Identity = 63/81 (77.78%), Postives = 75/81 (92.59%), Query Frame = 1
Query: 25 RTDALPGEKPKGIKTHLRNMLIVPEMIGSIVGIYNGKSMNGVEIKPEMVGHYLGEFSITYKPVRHGRPGIGSTNSSRFIPL 267
+ +A P EKP+ +KTHLRNM+IVPEMIGS+VG+YNGK+ N VEIKPEM+GHYLGEFSITYKPV+HGRPGIG+TNSSRF+PL
Sbjct: 70 KKEAAPNEKPETVKTHLRNMIIVPEMIGSVVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATNSSRFVPL 150
BLAST of mRNA_H-canaliculatus_M_contigs7516.1.1 vs.
Match: 40S (ribosomal protein S15 n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5INS0_9HYME) HSP 1 Score: 145 bits (367), Expect = 1.830e-43 Identity = 64/81 (79.01%), Postives = 75/81 (92.59%), Query Frame = 1
Query: 25 RTDALPGEKPKGIKTHLRNMLIVPEMIGSIVGIYNGKSMNGVEIKPEMVGHYLGEFSITYKPVRHGRPGIGSTNSSRFIPL 267
+ DA P EKP+ +KTHLRNM+IVPEM+GSIVG+YNGK+ N VEIKPEM+GHYLGEFSITYKPV+HGRPGIG+T+SSRFIPL
Sbjct: 37 KKDAPPNEKPEIVKTHLRNMVIVPEMVGSIVGVYNGKAFNSVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPL 117
BLAST of mRNA_H-canaliculatus_M_contigs7516.1.1 vs.
Match: Uncharacterized (protein n=5 Tax=Absidia TaxID=4828 RepID=A0A163J6W9_ABSGL) HSP 1 Score: 145 bits (367), Expect = 4.320e-43 Identity = 64/81 (79.01%), Postives = 75/81 (92.59%), Query Frame = 1
Query: 25 RTDALPGEKPKGIKTHLRNMLIVPEMIGSIVGIYNGKSMNGVEIKPEMVGHYLGEFSITYKPVRHGRPGIGSTNSSRFIPL 267
+T+A GEKP +KTHLRNM+IVPEMIGS+VG+YNGK+ N VEI+PEMVGHYLGEFSITYKPVRHGRPGIG+T+SSRF+PL
Sbjct: 65 KTEAPSGEKPSTVKTHLRNMIIVPEMIGSVVGVYNGKTFNQVEIRPEMVGHYLGEFSITYKPVRHGRPGIGATHSSRFVPL 145
BLAST of mRNA_H-canaliculatus_M_contigs7516.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Chara braunii TaxID=69332 RepID=A0A388K1Y8_CHABU) HSP 1 Score: 145 bits (367), Expect = 5.190e-43 Identity = 63/81 (77.78%), Postives = 76/81 (93.83%), Query Frame = 1
Query: 25 RTDALPGEKPKGIKTHLRNMLIVPEMIGSIVGIYNGKSMNGVEIKPEMVGHYLGEFSITYKPVRHGRPGIGSTNSSRFIPL 267
R +A PGEKP+ ++THLRNM+IVPEMIG+I+G+YNGK+ N VEIKPEM+GHYLGEFSITYKPV+HGRPGIG+T+SSRFIPL
Sbjct: 71 RREAPPGEKPEPVRTHLRNMIIVPEMIGTIIGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPL 151 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7516.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs7516.1.1 >prot_H-canaliculatus_M_contigs7516.1.1 ID=prot_H-canaliculatus_M_contigs7516.1.1|Name=mRNA_H-canaliculatus_M_contigs7516.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=91bp CLHAPLFVRTDALPGEKPKGIKTHLRNMLIVPEMIGSIVGIYNGKSMNGVback to top mRNA from alignment at H-canaliculatus_M_contigs7516:1404..2423+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs7516.1.1 ID=mRNA_H-canaliculatus_M_contigs7516.1.1|Name=mRNA_H-canaliculatus_M_contigs7516.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1020bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7516:1404..2423+ (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7516:1404..2423+ >mRNA_H-canaliculatus_M_contigs7516.1.1 ID=mRNA_H-canaliculatus_M_contigs7516.1.1|Name=mRNA_H-canaliculatus_M_contigs7516.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=273bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7516:1404..2423+ (Hapterophycus canaliculatus Oshoro7m male)back to top |