mRNA_H-canaliculatus_M_contigs75154.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75154.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75154.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs75154.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 1.940e-31
Identity = 68/136 (50.00%), Postives = 87/136 (63.97%), Query Frame = 1
Query:    1 MFIDPAEERVERERALDDSVEKAVQNGLSTDGACRLRDILGRRVNDFQRALHGDPPARMEPMRVQLKPHAKAVKGKPRRYNPVKTGWLASCIAAVVAFGLLVHNIQAVWASPAMAVPKRDA----FRLVSDYQAVN 396
            M + PAEE   R  ALD +V+ A   GLS  G  RLR ++ RR N F+R + GDPPA + PM V+LK  AK VK + R YNP KT WL +C+AA+VA GL+  N+QA+WAS  M  PKR      +R V D++AVN
Sbjct:  587 MVMTPAEEEAGRADALDRAVDSAADAGLSPWGLDRLRQVVDRRFNVFRRGVRGDPPANVPPMTVKLKTGAKPVKARLRTYNPDKTKWLTTCLAALVALGLVYVNLQAIWASAIMLTPKRSGDKVTYRFVGDFRAVN 722          
BLAST of mRNA_H-canaliculatus_M_contigs75154.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 8.050e-30
Identity = 67/133 (50.38%), Postives = 83/133 (62.41%), Query Frame = 1
Query:    1 MFIDPAEERVERERALDDSVEKAVQNGLSTDGACRLRDILGRRVNDFQRAL-HGDPPARMEPMRVQLKPHAKAVKGKPRRYNPVKTGWLASCIAAVVAFGLLVHNIQAVWASPAMAVPKRDAFRLVSDYQAVN 396
            M + P EE   R  +LD +V  A   GL      RLR I+  R N F+R L HGDPPA +EP+RV LKP A+ VK +PR YNP+KT WLA         GL+  N+QAVWAS AMA PK+  +RLVSD++A N
Sbjct:  695 MDMSPEEEASARSASLDSAVSSAAAAGLEEPHVGRLRGIISERWNAFRRGLRHGDPPANVEPLRVTLKPGARPVKARPRVYNPIKTAWLAG-------LGLVFLNMQAVWASAAMATPKKGGYRLVSDFRAAN 820          
BLAST of mRNA_H-canaliculatus_M_contigs75154.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK9_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 1.380e-29
Identity = 65/132 (49.24%), Postives = 85/132 (64.39%), Query Frame = 1
Query:    7 IDPAEERVERERALDDSVEKAVQNGLSTDGACRLRDILGRRVNDFQRALH-GDPPARMEPMRVQLKPHAKAVKGKPRRYNPVKTGWLASCIAAVVAFGLLVHNIQAVWASPAMAVPKRDAFRLVSDYQAVNS 399
            + P EE   R  +LD +V  AV  GL      RLR I+  R N F+  +  GDPPA +EP+RV LKP A  VK +PR YNP+KT WLA C+A+ V  GL+  N+QAV AS AMA PK+  +RL+SD++A N+
Sbjct:  471 MSPEEEASARSASLDSAVSSAVVAGLDEPHVGRLRSIIRERWNAFRPGMRPGDPPANVEPLRVTLKPGALPVKARPRTYNPIKTAWLAGCMASPVVLGLVFLNMQAVSASAAMATPKKGGYRLLSDFRAANN 602          
BLAST of mRNA_H-canaliculatus_M_contigs75154.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XQJ2_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 3.800e-15
Identity = 48/133 (36.09%), Postives = 74/133 (55.64%), Query Frame = 1
Query:   19 EERVERERA----LDDSVEKAVQNGLSTDGACRLRDILGRRVNDFQRALHGDPPARMEPMRVQLKPHAKAVKGKPRRYNPVKTGWLASCIAAVVAFGLLVHNIQAVWASPAMAVPKRDA--FRLVSDYQAVNS 399
            E R ++E A    L   V  A   GL+ +   RL  +L R V+ F+  L  DPP ++EP++V++KP +K VK   RRY P    ++   +AA+ A G++  N +A WA+    VPKRDA   R+  D + +N+
Sbjct:  359 ERRKKKEEAVLGILMSKVADAQARGLTAEETARLESLLSRHVDVFREDLGNDPPVKVEPLKVRVKPDSKPVKCAMRRYPPAHLEYMREHVAALEANGMVYKNNRATWAAAPRIVPKRDAGALRMTIDSRPINA 491          
BLAST of mRNA_H-canaliculatus_M_contigs75154.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WYH1_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 7.810e-15
Identity = 45/120 (37.50%), Postives = 67/120 (55.83%), Query Frame = 1
Query:   46 LDDSVEKAVQNGLSTDGACRLRDILGRRVNDFQRALHGDPPARMEPMRVQLKPHAKAVKGKPRRYNPVKTGWLASCIAAVVAFGLLVHNIQAVWASPAMAVPKRDA--FRLVSDYQAVNS 399
            LD   +  V NGL+   A RLR++L R  + F+  + GDPP ++EP++V+LKP +  VK   RRY P    +L   +  +   GL+  N +A WAS    VPK+D    R+  D Q +N+
Sbjct:   32 LDKVHDAEVHNGLTNQDAGRLREMLLRYADVFREDVEGDPPVKVEPIKVRLKPGSVPVKCSMRRYPPAHMDFLKRHVEQLERAGLVYKNNRATWASAPRIVPKKDPGDLRMTIDSQPINA 151          
BLAST of mRNA_H-canaliculatus_M_contigs75154.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0M9I6_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.160e-14
Identity = 46/119 (38.66%), Postives = 67/119 (56.30%), Query Frame = 1
Query:   43 ALDDSVEKAVQNGLSTDGACRLRDILGRRVNDFQRALHGDPPARMEPMRVQLKPHAKAVKGKPRRYNPVKTGWLASCIAAVVAFGLLVHNIQAVWASPAMAVPKRDA-FRLVSDYQAVN 396
            A++  +E AVQ G   +   RLR I  R  + ++  L  DPPAR+ PM+++LKP AK  + KPR+Y P    +L    A +V  G +  N ++ WA PA+ V K    FR  +DY+ VN
Sbjct:   47 AVEKMIESAVQKGFPKESVPRLRRIATR-YDIWRLRLGDDPPARVPPMKIRLKPGAKPYRCKPRKYPPEVRRFLDDFNAELVRLGWVYENTESRWACPALPVRKTGGEFRQTADYKPVN 164          
BLAST of mRNA_H-canaliculatus_M_contigs75154.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WKQ3_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.690e-14
Identity = 41/109 (37.61%), Postives = 65/109 (59.63%), Query Frame = 1
Query:   79 GLSTDGACRLRDILGRRVNDFQRALHGDPPARMEPMRVQLKPHAKAVKGKPRRYNPVKTGWLASCIAAVVAFGLLVHNIQAVWASPAMAVPKRDA--FRLVSDYQAVNS 399
            GL+ + A RL  +L R V+ F+  L  DPP ++EP++V++KP +K VK   RRY P    ++   +AA+ A G++  N +A WA+     PKRDA   R+  D + +N+
Sbjct:  358 GLTAEEAARLESLLSRHVDVFREDLGNDPPVKVEPLKVRVKPDSKPVKCGMRRYPPAHLEYMREHVAALEANGMVYKNNRATWAAAPRIFPKRDAGALRMTIDSRPINA 466          
BLAST of mRNA_H-canaliculatus_M_contigs75154.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XUC8_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.690e-14
Identity = 43/116 (37.07%), Postives = 67/116 (57.76%), Query Frame = 1
Query:   58 VEKAVQNGLSTDGACRLRDILGRRVNDFQRALHGDPPARMEPMRVQLKPHAKAVKGKPRRYNPVKTGWLASCIAAVVAFGLLVHNIQAVWASPAMAVPKRDA--FRLVSDYQAVNS 399
            V  A   GL+ +   RL  +L R V+ F+  L  DPP ++EP++V++KP +K VK   RRY P    ++   +AA+ A G++  N +A WA+    VPKRDA   R+  D + +N+
Sbjct:  207 VADAQARGLTAEEPARLESLLSRHVDVFRDDLGNDPPVKVEPLKVRVKPDSKPVKCGMRRYPPAHLEYMREHVAALEANGMVYKNNRATWAAAPRIVPKRDAGVLRMTIDSRPINA 322          
BLAST of mRNA_H-canaliculatus_M_contigs75154.1.1 vs.
Match: Reverse (transcriptase domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5ADY1_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 4.570e-14
Identity = 45/138 (32.61%), Postives = 77/138 (55.80%), Query Frame = 1
Query:   16 AEERVERERALDDSVE--------KAVQNGLSTDGACRLRDILGRRVNDFQRALHGDPPARMEPMRVQLKPHAKAVKGKPRRYNPVKTGWLASCIAAVVAFGLLVHNIQAVWASPAMAVPKRDA--FRLVSDYQAVNS 399
            AE+  ER R    +V+        +A   GL+   A RL D+L + ++ F+  L  DPP ++EP++V++KP +  VK   RRY P+   ++ S +AA+ A G++  N +A WA+    VPK++    R+  D + +N+
Sbjct:  744 AEDEAERRRTKQGAVQAILTAKAAEAETRGLAPAEATRLHDLLAKHIDVFREDLGDDPPVKVEPLKVRIKPGSTPVKCGMRRYPPLHVEYMRSHVAALEANGMVYQNNRATWAAAPRIVPKKEVGDLRMTIDSRPINA 881          
BLAST of mRNA_H-canaliculatus_M_contigs75154.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0Q2T5_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 5.030e-14
Identity = 46/119 (38.66%), Postives = 67/119 (56.30%), Query Frame = 1
Query:   43 ALDDSVEKAVQNGLSTDGACRLRDILGRRVNDFQRALHGDPPARMEPMRVQLKPHAKAVKGKPRRYNPVKTGWLASCIAAVVAFGLLVHNIQAVWASPAMAVPKRDA-FRLVSDYQAVN 396
            A++  +E AVQ G   +   RLR I  R  + ++  L  DPPAR+ PM+++LKP AK  + KPR+Y P    +L    A +V  G +  N ++ WA PA+ V K    FR  +DY+ VN
Sbjct:  128 AVEKMIESAVQKGFPKESVPRLRRIATR-YDIWRLRLGDDPPARVPPMKIRLKPGAKPYRCKPRKYPPEVRRFLDDFNAELVRLGWVYENTESRWACPALPVRKTGGEFRQTADYKPVN 245          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75154.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized1.940e-3150.00protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized8.050e-3050.38protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.380e-2949.24protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.800e-1536.09protein n=1 Tax=Aphanomyces euteiches TaxID=100861... [more]
Uncharacterized7.810e-1537.50protein n=1 Tax=Aphanomyces euteiches TaxID=100861... [more]
Uncharacterized1.160e-1438.66protein n=1 Tax=Phytophthora fragariae TaxID=53985... [more]
Uncharacterized1.690e-1437.61protein n=1 Tax=Aphanomyces euteiches TaxID=100861... [more]
Uncharacterized1.690e-1437.07protein n=1 Tax=Aphanomyces euteiches TaxID=100861... [more]
Reverse4.570e-1432.61transcriptase domain-containing protein n=1 Tax=Ap... [more]
Uncharacterized5.030e-1438.66protein n=2 Tax=Phytophthora fragariae TaxID=53985... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75154contigH-canaliculatus_M_contigs75154:140..538 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog164328.Phyra85588
PFAMsRVT_1,rve
Model size399
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.59e-14
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QEWS@4776|Peronosporales
Descriptiontransposition, RNA-mediated
Cds size399
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854089.2025511-CDS-H-canaliculatus_M_contigs75154:139..5381696854089.2025511-CDS-H-canaliculatus_M_contigs75154:139..538Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75154 140..538 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75154.1.1prot_H-canaliculatus_M_contigs75154.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75154 140..538 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75154.1.1

>prot_H-canaliculatus_M_contigs75154.1.1 ID=prot_H-canaliculatus_M_contigs75154.1.1|Name=mRNA_H-canaliculatus_M_contigs75154.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=133bp
MFIDPAEERVERERALDDSVEKAVQNGLSTDGACRLRDILGRRVNDFQRA
LHGDPPARMEPMRVQLKPHAKAVKGKPRRYNPVKTGWLASCIAAVVAFGL
LVHNIQAVWASPAMAVPKRDAFRLVSDYQAVNS
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mRNA from alignment at H-canaliculatus_M_contigs75154:140..538+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75154.1.1 ID=mRNA_H-canaliculatus_M_contigs75154.1.1|Name=mRNA_H-canaliculatus_M_contigs75154.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=399bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75154:140..538+ (Hapterophycus canaliculatus Oshoro7m male)
ATGTTCATCGACCCAGCGGAAGAGCGCGTGGAACGAGAGCGAGCGCTGGA TGATAGCGTTGAGAAGGCCGTGCAGAATGGTCTCAGCACAGACGGTGCGT GCCGTTTGCGCGATATTTTGGGTCGTCGCGTGAATGACTTTCAGCGGGCG TTGCATGGTGATCCGCCAGCGCGCATGGAGCCGATGAGGGTGCAATTGAA GCCACACGCAAAGGCCGTCAAAGGCAAGCCCCGGAGATACAATCCAGTGA AGACCGGGTGGCTCGCATCTTGCATCGCGGCGGTGGTGGCGTTTGGTTTG CTCGTGCACAACATCCAGGCTGTGTGGGCGAGTCCGGCAATGGCGGTGCC GAAACGGGACGCTTTCCGCTTGGTAAGCGACTACCAGGCGGTGAACTCA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75154:140..538+

>mRNA_H-canaliculatus_M_contigs75154.1.1 ID=mRNA_H-canaliculatus_M_contigs75154.1.1|Name=mRNA_H-canaliculatus_M_contigs75154.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=399bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75154:140..538+ (Hapterophycus canaliculatus Oshoro7m male)
ATGTTCATCGACCCAGCGGAAGAGCGCGTGGAACGAGAGCGAGCGCTGGA
TGATAGCGTTGAGAAGGCCGTGCAGAATGGTCTCAGCACAGACGGTGCGT
GCCGTTTGCGCGATATTTTGGGTCGTCGCGTGAATGACTTTCAGCGGGCG
TTGCATGGTGATCCGCCAGCGCGCATGGAGCCGATGAGGGTGCAATTGAA
GCCACACGCAAAGGCCGTCAAAGGCAAGCCCCGGAGATACAATCCAGTGA
AGACCGGGTGGCTCGCATCTTGCATCGCGGCGGTGGTGGCGTTTGGTTTG
CTCGTGCACAACATCCAGGCTGTGTGGGCGAGTCCGGCAATGGCGGTGCC
GAAACGGGACGCTTTCCGCTTGGTAAGCGACTACCAGGCGGTGAACTCA
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