mRNA_H-canaliculatus_M_contigs75138.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75138.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75138.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs75138.1.1 vs.
Match: Tetratricopeptide (repeat n=1 Tax=Roseburia sp. CAG:182 TaxID=1262942 RepID=R7QTZ5_9FIRM)

HSP 1 Score: 59.7 bits (143), Expect = 1.240e-7
Identity = 38/110 (34.55%), Postives = 59/110 (53.64%), Query Frame = 1 
Query:    1 YEDRGKAYFILGQYDKAEEALEQARQLNPLSSDTLVWLGDVKYILGDTEGALEIARDNYRWNNDRAAGLELLIYLLSETGDYAGSHELIQEAIA---INPDDLWRRDELV 321
            Y  RGKAY +LG+YDKA E L++A +L   S D +++   V    GD++ A  +  +  + N D  A L  L  +L E G Y  +   IQ A+A   +  +   RR+E++
Sbjct:  178 YAMRGKAYALLGEYDKAAEQLDKAVELK--SDDAILYRAQVYEAAGDSDKAQSLYEEYVKTNEDNPAALGSLGSMLLEAGKYEDALNYIQTALASEDVEDEQNLRRNEIL 285
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BLAST of mRNA_H-canaliculatus_M_contigs75138.1.1 vs.
Match: tetratricopeptide (repeat protein n=1 Tax=Roseburia hominis TaxID=301301 RepID=UPI001F48BD81)

HSP 1 Score: 57.0 bits (136), Expect = 1.090e-6
Identity = 38/110 (34.55%), Postives = 59/110 (53.64%), Query Frame = 1 
Query:    1 YEDRGKAYFILGQYDKAEEALEQARQLNPLSSDTLVWLGDVKYILGDTEGALEIARDNYRWNNDRAAGLELLIYLLSETGDYAGSHELIQEAIAINPD---DLWRRDELV 321
            Y  RGKAY ++G Y+KA+E L++A +L   S    ++   V    GD + A  +  +  + N D AA L  L  +L E GDY  +   IQ A+++  D    L RR+E++
Sbjct:  174 YAMRGKAYVLMGDYEKAKEQLDKAIELG--SEQATLYRAQVYSAEGDADKAKSLYENYVKNNKDNAAALGNLGSILLEQGDYDDALTYIQMALSLEGDKDEQLLRRNEIL 281
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75138.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Tetratricopeptide1.240e-734.55repeat n=1 Tax=Roseburia sp. CAG:182 TaxID=1262942... [more]
tetratricopeptide1.090e-634.55repeat protein n=1 Tax=Roseburia hominis TaxID=301... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75138contigH-canaliculatus_M_contigs75138:3..458 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1410625.JHWK01000002_gene251
PFAMsTPR_16,TPR_19,TPR_2,TPR_6,TPR_7,TPR_8
Model size456
Max annot lvl186801|Clostridia
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.98e-06
EggNOG OGsCOG0457@1|root,COG0457@2|Bacteria,1V4J9@1239|Firmicutes,24HT2@186801|Clostridia,27IN2@186928|unclassified Lachnospiraceae
DescriptionTetratricopeptide repeat
Cds size456
COG categoryM
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854089.1273088-CDS-H-canaliculatus_M_contigs75138:2..4581696854089.1273088-CDS-H-canaliculatus_M_contigs75138:2..458Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75138 3..458 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75138.1.1prot_H-canaliculatus_M_contigs75138.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75138 3..458 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75138.1.1

>prot_H-canaliculatus_M_contigs75138.1.1 ID=prot_H-canaliculatus_M_contigs75138.1.1|Name=mRNA_H-canaliculatus_M_contigs75138.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=152bp
YEDRGKAYFILGQYDKAEEALEQARQLNPLSSDTLVWLGDVKYILGDTEG
ALEIARDNYRWNNDRAAGLELLIYLLSETGDYAGSHELIQEAIAINPDDL
WRRDELVTLYGELGMREEALKAATTPHLTAWAYSVLGEPDNARPILDEVE
NL
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mRNA from alignment at H-canaliculatus_M_contigs75138:3..458+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75138.1.1 ID=mRNA_H-canaliculatus_M_contigs75138.1.1|Name=mRNA_H-canaliculatus_M_contigs75138.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=456bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75138:3..458+ (Hapterophycus canaliculatus Oshoro7m male)
TATGAGGACCGTGGTAAAGCATACTTTATCCTCGGCCAATATGATAAAGC
GGAAGAAGCACTGGAACAGGCACGCCAGCTCAATCCGCTGTCGAGCGATA
CGCTCGTCTGGCTTGGTGATGTGAAATACATCCTCGGCGATACTGAGGGC
GCGCTGGAGATTGCTCGCGACAATTATCGCTGGAACAATGACCGAGCTGC
TGGGTTGGAGCTTTTGATCTATCTACTTTCCGAAACGGGCGATTATGCTG
GAAGTCACGAACTGATACAGGAAGCGATCGCAATTAACCCGGATGACCTT
TGGCGGCGCGATGAATTGGTGACGCTCTATGGCGAACTAGGCATGCGCGA
AGAAGCGCTCAAAGCGGCAACAACCCCGCATCTTACCGCATGGGCGTATA
GTGTTCTCGGTGAGCCGGACAATGCGCGCCCCATCCTCGATGAGGTCGAA
AACCTT
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75138:3..458+

>mRNA_H-canaliculatus_M_contigs75138.1.1 ID=mRNA_H-canaliculatus_M_contigs75138.1.1|Name=mRNA_H-canaliculatus_M_contigs75138.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=456bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75138:3..458+ (Hapterophycus canaliculatus Oshoro7m male)
TATGAGGACCGTGGTAAAGCATACTTTATCCTCGGCCAATATGATAAAGC
GGAAGAAGCACTGGAACAGGCACGCCAGCTCAATCCGCTGTCGAGCGATA
CGCTCGTCTGGCTTGGTGATGTGAAATACATCCTCGGCGATACTGAGGGC
GCGCTGGAGATTGCTCGCGACAATTATCGCTGGAACAATGACCGAGCTGC
TGGGTTGGAGCTTTTGATCTATCTACTTTCCGAAACGGGCGATTATGCTG
GAAGTCACGAACTGATACAGGAAGCGATCGCAATTAACCCGGATGACCTT
TGGCGGCGCGATGAATTGGTGACGCTCTATGGCGAACTAGGCATGCGCGA
AGAAGCGCTCAAAGCGGCAACAACCCCGCATCTTACCGCATGGGCGTATA
GTGTTCTCGGTGAGCCGGACAATGCGCGCCCCATCCTCGATGAGGTCGAA
AACCTT
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