mRNA_H-canaliculatus_M_contigs75121.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75121.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75121.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs75121.1.1 vs.
Match: Pyruvate (dehydrogenase (acetyl-transferring) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEK3_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 4.160e-31
Identity = 59/61 (96.72%), Postives = 59/61 (96.72%), Query Frame = 1 
Query:    1 DTLVKDFGVDESKFEDYSTISKEDQLKGYEMMQLCRQFENACNQAYMQGKIRGFMHLDNGQ 183
            DTLVKDFGVDESKFE YS ISKEDQLKGYEMMQLCRQFENACNQAYMQGKIRGFMHLDNGQ
Sbjct:   84 DTLVKDFGVDESKFEGYSAISKEDQLKGYEMMQLCRQFENACNQAYMQGKIRGFMHLDNGQ 144
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BLAST of mRNA_H-canaliculatus_M_contigs75121.1.1 vs.
Match: Hypothetical (protein (Fragment) n=2 Tax=Choreotrichia TaxID=141411 RepID=A0A7S3HUG5_9SPIT)

HSP 1 Score: 89.4 bits (220), Expect = 2.370e-21
Identity = 42/59 (71.19%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:    7 LVKDFGVDESKFEDYSTISKEDQLKGYEMMQLCRQFENACNQAYMQGKIRGFMHLDNGQ 183
            L  +FG  E +   Y  I K+D LK YEMMQLCRQFENACNQAYMQG IRGFMHLDNGQ
Sbjct:   15 LEVEFGFTEEELSKYDAIQKDDLLKAYEMMQLCRQFENACNQAYMQGNIRGFMHLDNGQ 73
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BLAST of mRNA_H-canaliculatus_M_contigs75121.1.1 vs.
Match: Pyruvate (dehydrogenase (acetyl-transferring) n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JRY3_9EUKA)

HSP 1 Score: 92.0 bits (227), Expect = 2.720e-20
Identity = 44/59 (74.58%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:    7 LVKDFGVDESKFEDYSTISKEDQLKGYEMMQLCRQFENACNQAYMQGKIRGFMHLDNGQ 183
            L  DFG+ E   + Y TI K D LK YEMMQLCRQFENACNQAYMQG IRGFMHLDNGQ
Sbjct:  100 LELDFGIPEETLKKYDTIEKGDMLKAYEMMQLCRQFENACNQAYMQGFIRGFMHLDNGQ 158
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BLAST of mRNA_H-canaliculatus_M_contigs75121.1.1 vs.
Match: Pyruvate (dehydrogenase (acetyl-transferring) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1B9S2_EMIHU)

HSP 1 Score: 91.7 bits (226), Expect = 3.710e-20
Identity = 43/59 (72.88%), Postives = 47/59 (79.66%), Query Frame = 1 
Query:    7 LVKDFGVDESKFEDYSTISKEDQLKGYEMMQLCRQFENACNQAYMQGKIRGFMHLDNGQ 183
            L  +FG  E + + Y  +SK D LKGYEMMQLCRQFENACNQAYMQG IRGFMHLDNGQ
Sbjct:   83 LEVEFGFKEEELKQYDDVSKADLLKGYEMMQLCRQFENACNQAYMQGHIRGFMHLDNGQ 141
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BLAST of mRNA_H-canaliculatus_M_contigs75121.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4M2W8_9EUKA)

HSP 1 Score: 83.6 bits (205), Expect = 7.250e-18
Identity = 39/59 (66.10%), Postives = 43/59 (72.88%), Query Frame = 1 
Query:    7 LVKDFGVDESKFEDYSTISKEDQLKGYEMMQLCRQFENACNQAYMQGKIRGFMHLDNGQ 183
            L  +F + E     Y  +S ED  + YEMMQLCRQFENACNQAYMQG IRGFMHLDNGQ
Sbjct:   16 LEVEFKIPEETLAKYDAVSSEDLFEAYEMMQLCRQFENACNQAYMQGHIRGFMHLDNGQ 74
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BLAST of mRNA_H-canaliculatus_M_contigs75121.1.1 vs.
Match: Pyruvate (dehydrogenase (acetyl-transferring) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A6T7SKE6_9EUKA)

HSP 1 Score: 84.3 bits (207), Expect = 1.380e-17
Identity = 39/59 (66.10%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:    7 LVKDFGVDESKFEDYSTISKEDQLKGYEMMQLCRQFENACNQAYMQGKIRGFMHLDNGQ 183
            L  +FG+++S  + Y  I ++  L  YEMMQLCRQFENACNQAYMQG IRGFMHLDNGQ
Sbjct:   91 LETEFGINDSDLKKYDEIPEDAVLAAYEMMQLCRQFENACNQAYMQGNIRGFMHLDNGQ 149
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BLAST of mRNA_H-canaliculatus_M_contigs75121.1.1 vs.
Match: Pyruvate (dehydrogenase (acetyl-transferring) n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TYT3_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 8.980e-17
Identity = 38/55 (69.09%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:   19 FGVDESKFEDYSTISKEDQLKGYEMMQLCRQFENACNQAYMQGKIRGFMHLDNGQ 183
            FG+ E+    Y T+ K D LK Y MM++ RQFENACNQAYMQGKIRGFMHLDNGQ
Sbjct:  106 FGLTENSLGKYDTVGKADLLKAYTMMEVSRQFENACNQAYMQGKIRGFMHLDNGQ 160
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BLAST of mRNA_H-canaliculatus_M_contigs75121.1.1 vs.
Match: Pyruvate (dehydrogenase (acetyl-transferring) n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A096P931_OSTTA)

HSP 1 Score: 81.6 bits (200), Expect = 1.230e-16
Identity = 39/61 (63.93%), Postives = 43/61 (70.49%), Query Frame = 1 
Query:    1 DTLVKDFGVDESKFEDYSTISKEDQLKGYEMMQLCRQFENACNQAYMQGKIRGFMHLDNGQ 183
            D L +DFG  E + +    +S ED  K Y MMQLCR FEN CNQAYM GKIRGFMHLDNGQ
Sbjct:   55 DALKRDFGATEEELKRAEALSDEDLSKAYYMMQLCRDFENECNQAYMAGKIRGFMHLDNGQ 115
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BLAST of mRNA_H-canaliculatus_M_contigs75121.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VUT6_9CRYP)

HSP 1 Score: 81.3 bits (199), Expect = 1.540e-16
Identity = 42/59 (71.19%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:    7 LVKDFGVDESKFEDYSTISKEDQLKGYEMMQLCRQFENACNQAYMQGKIRGFMHLDNGQ 183
             VK+FGV   +++    ISKED LKGY MMQL R FENACNQAYMQG IRGFMHLDNGQ
Sbjct:  123 FVKNFGVSADQWD---LISKEDLLKGYGMMQLSRLFENACNQAYMQGHIRGFMHLDNGQ 178
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BLAST of mRNA_H-canaliculatus_M_contigs75121.1.1 vs.
Match: Pyruvate (dehydrogenase (acetyl-transferring) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8J1_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 7.950e-16
Identity = 39/59 (66.10%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:    7 LVKDFGVDESKFEDYSTISKEDQLKGYEMMQLCRQFENACNQAYMQGKIRGFMHLDNGQ 183
            L  DFG+   K  +Y ++SKED LK Y MMQL RQFENAC QAYMQ  +RGFMHLDNGQ
Sbjct:   16 LKSDFGIKNVK--EYDSVSKEDLLKAYHMMQLSRQFENACTQAYMQQHVRGFMHLDNGQ 72
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75121.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Pyruvate4.160e-3196.72dehydrogenase (acetyl-transferring) n=2 Tax=Ectoca... [more]
Hypothetical2.370e-2171.19protein (Fragment) n=2 Tax=Choreotrichia TaxID=141... [more]
Pyruvate2.720e-2074.58dehydrogenase (acetyl-transferring) n=1 Tax=Chryso... [more]
Pyruvate3.710e-2072.88dehydrogenase (acetyl-transferring) n=1 Tax=Emilia... [more]
Hypothetical7.250e-1866.10protein (Fragment) n=1 Tax=Prymnesium polylepis Ta... [more]
Pyruvate1.380e-1766.10dehydrogenase (acetyl-transferring) n=1 Tax=Phaeoc... [more]
Pyruvate8.980e-1769.09dehydrogenase (acetyl-transferring) n=2 Tax=Monodo... [more]
Pyruvate1.230e-1663.93dehydrogenase (acetyl-transferring) n=2 Tax=Ostreo... [more]
Hypothetical1.540e-1671.19protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID... [more]
Pyruvate7.950e-1666.10dehydrogenase (acetyl-transferring) n=1 Tax=Tribon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75121contigH-canaliculatus_M_contigs75121:220..402 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LEK3
Preferred nameodpA
PFAMsE1_dh,Transket_pyr,Transketolase_C
Model size183
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00027,RC00627,RC02742,RC02744,RC02882
KEGG koko:K00161
KEGG ReactionR00014,R00209,R01699,R03270
KEGG Pathwayko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko04066,ko04922,ko05230,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200,map04066,map04922,map05230
KEGG ModuleM00307
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464
Exons1
Evalue6.82e-32
EggNOG OGsCOG0022@1|root,COG0462@1|root,KOG0225@2759|Eukaryota,KOG0524@2759|Eukaryota
EC1.2.4.1
Descriptionpyruvate dehydrogenase (acetyl-transferring) activity
Cds size183
COG categoryC
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854089.051936-CDS-H-canaliculatus_M_contigs75121:219..4021696854089.051936-CDS-H-canaliculatus_M_contigs75121:219..402Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75121 220..402 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75121.1.1prot_H-canaliculatus_M_contigs75121.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75121 220..402 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75121.1.1

>prot_H-canaliculatus_M_contigs75121.1.1 ID=prot_H-canaliculatus_M_contigs75121.1.1|Name=mRNA_H-canaliculatus_M_contigs75121.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=61bp
DTLVKDFGVDESKFEDYSTISKEDQLKGYEMMQLCRQFENACNQAYMQGK
IRGFMHLDNGQ
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mRNA from alignment at H-canaliculatus_M_contigs75121:220..402-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75121.1.1 ID=mRNA_H-canaliculatus_M_contigs75121.1.1|Name=mRNA_H-canaliculatus_M_contigs75121.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=183bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75121:220..402- (Hapterophycus canaliculatus Oshoro7m male)
GACACCCTGGTGAAAGACTTCGGGGTGGACGAGTCGAAGTTCGAGGACTA
CTCCACCATCTCCAAGGAGGACCAGCTCAAGGGTTACGAGATGATGCAGC
TGTGCCGCCAGTTCGAGAACGCGTGCAACCAGGCGTACATGCAGGGGAAG
ATCAGGGGTTTCATGCACCTCGACAACGGGCAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75121:220..402-

>mRNA_H-canaliculatus_M_contigs75121.1.1 ID=mRNA_H-canaliculatus_M_contigs75121.1.1|Name=mRNA_H-canaliculatus_M_contigs75121.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=183bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75121:220..402- (Hapterophycus canaliculatus Oshoro7m male)
GACACCCTGGTGAAAGACTTCGGGGTGGACGAGTCGAAGTTCGAGGACTA
CTCCACCATCTCCAAGGAGGACCAGCTCAAGGGTTACGAGATGATGCAGC
TGTGCCGCCAGTTCGAGAACGCGTGCAACCAGGCGTACATGCAGGGGAAG
ATCAGGGGTTTCATGCACCTCGACAACGGGCAG
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