mRNA_H-canaliculatus_M_contigs75119.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75119.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75119.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs75119.1.1 vs.
Match: AP-1 (complex subunit gamma n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGH0_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 1.590e-23
Identity = 51/59 (86.44%), Postives = 57/59 (96.61%), Query Frame = 1 
Query:    1 MSIKLRQLIRQVRACKTAAEERAVIATEGALIRTAFKDGNEPNRARNVAKLLYMHMLGE 177
            MSI+LRQLIR+VR+CKTAAEERAVIATEGALIRTAFK+GN+P RARNVA+LLYMHM GE
Sbjct:    1 MSIRLRQLIRKVRSCKTAAEERAVIATEGALIRTAFKEGNDPTRARNVARLLYMHMFGE 59
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BLAST of mRNA_H-canaliculatus_M_contigs75119.1.1 vs.
Match: Adaptin_N (domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XRJ5_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 8.690e-19
Identity = 46/61 (75.41%), Postives = 50/61 (81.97%), Query Frame = 1 
Query:    1 MSIKLRQLIRQVRACKTAAEERAVIATEGALIRTAFKDGNEPNRARNVAKLLYMHMLGEAS 183
            MS KLR LIR VRACKTAAEERAVIA E ALIRTAFKD ++  R RNVAKLL++HMLG  S
Sbjct:    1 MSQKLRDLIRSVRACKTAAEERAVIAKESALIRTAFKDQDKQYRHRNVAKLLFIHMLGYPS 61
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75119.1.1 vs.
Match: Adaptin_N (domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T3C6_THAOC)

HSP 1 Score: 82.4 bits (202), Expect = 1.610e-18
Identity = 44/58 (75.86%), Postives = 49/58 (84.48%), Query Frame = 1 
Query:    1 MSIKLRQLIRQVRACKTAAEERAVIATEGALIRTAFKDGNEPNRARNVAKLLYMHMLG 174
            MS+KLR LIRQVRACKTAAEERAVIA E A+IRTA ++  E  R RNVAKLL+MHMLG
Sbjct:    1 MSLKLRDLIRQVRACKTAAEERAVIAKESAMIRTAIREEQEHYRHRNVAKLLFMHMLG 58
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75119.1.1 vs.
Match: Adaptin_N (domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425C4M0_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.990e-18
Identity = 47/61 (77.05%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:    1 MSIKLRQLIRQVRACKTAAEERAVIATEGALIRTAFKDGNEPNRARNVAKLLYMHMLGEAS 183
            MSIKLR LIR VRACKTAAEERAVIA E ALIRTAFKD ++  R RNVAKLL++HMLG  S
Sbjct:    1 MSIKLRDLIRNVRACKTAAEERAVIAKESALIRTAFKDNDKQYRHRNVAKLLFIHMLGYPS 61
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75119.1.1 vs.
Match: Adaptin_N (domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DE85_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 2.490e-18
Identity = 47/61 (77.05%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:    1 MSIKLRQLIRQVRACKTAAEERAVIATEGALIRTAFKDGNEPNRARNVAKLLYMHMLGEAS 183
            MSIKLR LIR VRACKTAAEERAVIA E ALIRTAFKD ++  R RNVAKLL++HMLG  S
Sbjct:    1 MSIKLRDLIRNVRACKTAAEERAVIAKESALIRTAFKDNDKQYRHRNVAKLLFIHMLGYPS 61
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75119.1.1 vs.
Match: Adaptin_N (domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397F0B5_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 5.320e-18
Identity = 47/61 (77.05%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:    1 MSIKLRQLIRQVRACKTAAEERAVIATEGALIRTAFKDGNEPNRARNVAKLLYMHMLGEAS 183
            MSIKLR LIR VRACKTAAEERAVIA E ALIRTAFKD ++  R RNVAKLL++HMLG  S
Sbjct:    1 MSIKLRDLIRNVRACKTAAEERAVIAKESALIRTAFKDNDKQYRHRNVAKLLFIHMLGYPS 61
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75119.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U5B6_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 5.560e-18
Identity = 47/61 (77.05%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:    1 MSIKLRQLIRQVRACKTAAEERAVIATEGALIRTAFKDGNEPNRARNVAKLLYMHMLGEAS 183
            MS++LR+LIR VRACKTAAEERAVIA E ALIRTAFKD NE  R RNVAKLL++HMLG  S
Sbjct:    1 MSMRLRELIRAVRACKTAAEERAVIAKECALIRTAFKDNNETFRHRNVAKLLFIHMLGYPS 61
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75119.1.1 vs.
Match: AP-1 (complex subunit gamma n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6WVD6_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 5.580e-18
Identity = 47/61 (77.05%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:    1 MSIKLRQLIRQVRACKTAAEERAVIATEGALIRTAFKDGNEPNRARNVAKLLYMHMLGEAS 183
            MSIKLR LIR VRACKTAAEERAVIA E ALIRTAFKD ++  R RNVAKLL++HMLG  S
Sbjct:    1 MSIKLRDLIRNVRACKTAAEERAVIAKESALIRTAFKDNDKQYRHRNVAKLLFIHMLGYPS 61
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75119.1.1 vs.
Match: AP-1 (complex subunit gamma n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KG16_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 5.590e-18
Identity = 47/61 (77.05%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:    1 MSIKLRQLIRQVRACKTAAEERAVIATEGALIRTAFKDGNEPNRARNVAKLLYMHMLGEAS 183
            MSIKLR LIR VRACKTAAEERAVIA E ALIRTAFKD ++  R RNVAKLL++HMLG  S
Sbjct:    1 MSIKLRDLIRNVRACKTAAEERAVIAKESALIRTAFKDNDKQYRHRNVAKLLFIHMLGYPS 61
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75119.1.1 vs.
Match: AP-1 (complex subunit gamma n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A024TMH5_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 5.590e-18
Identity = 47/61 (77.05%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:    1 MSIKLRQLIRQVRACKTAAEERAVIATEGALIRTAFKDGNEPNRARNVAKLLYMHMLGEAS 183
            MSIKLR LIR VRACKTAAEERAVIA E ALIRTAFKD ++  R RNVAKLL++HMLG  S
Sbjct:    1 MSIKLRDLIRNVRACKTAAEERAVIAKESALIRTAFKDNDKQYRHRNVAKLLFIHMLGYPS 61
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75119.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
AP-11.590e-2386.44complex subunit gamma n=2 Tax=Ectocarpus TaxID=287... [more]
Adaptin_N8.690e-1975.41domain-containing protein n=1 Tax=Nothophytophthor... [more]
Adaptin_N1.610e-1875.86domain-containing protein (Fragment) n=1 Tax=Thala... [more]
Adaptin_N1.990e-1877.05domain-containing protein n=1 Tax=Aphanomyces asta... [more]
Adaptin_N2.490e-1877.05domain-containing protein n=2 Tax=Aphanomyces asta... [more]
Adaptin_N5.320e-1877.05domain-containing protein (Fragment) n=1 Tax=Aphan... [more]
Hypothetical5.560e-1877.05protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=... [more]
AP-15.580e-1877.05complex subunit gamma n=2 Tax=Aphanomyces astaci T... [more]
AP-15.590e-1877.05complex subunit gamma n=1 Tax=Aphanomyces stellatu... [more]
AP-15.590e-1877.05complex subunit gamma n=5 Tax=Aphanomyces TaxID=10... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75119contigH-canaliculatus_M_contigs75119:80..286 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LGH0
PFAMsAdaptin_N,Alpha_adaptinC2
Model size207
Max annot lvl2759|Eukaryota
KEGG koko:K11279,ko:K12391
KEGG Pathwayko04142,map04142
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.61e-24
EggNOG OGsCOG4354@1|root,KOG1062@2759|Eukaryota
Descriptionintracellular protein transport
Cds size207
COG categoryG
BRITEko00000,ko00001,ko03036,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854089.0092573-CDS-H-canaliculatus_M_contigs75119:79..2861696854089.0092573-CDS-H-canaliculatus_M_contigs75119:79..286Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75119 80..286 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75119.1.1prot_H-canaliculatus_M_contigs75119.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75119 80..286 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75119.1.1

>prot_H-canaliculatus_M_contigs75119.1.1 ID=prot_H-canaliculatus_M_contigs75119.1.1|Name=mRNA_H-canaliculatus_M_contigs75119.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=69bp
MSIKLRQLIRQVRACKTAAEERAVIATEGALIRTAFKDGNEPNRARNVAK
LLYMHMLGEASRCCAWFCV
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mRNA from alignment at H-canaliculatus_M_contigs75119:80..286-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75119.1.1 ID=mRNA_H-canaliculatus_M_contigs75119.1.1|Name=mRNA_H-canaliculatus_M_contigs75119.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=207bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75119:80..286- (Hapterophycus canaliculatus Oshoro7m male)
ATGTCTATCAAGCTGCGGCAGCTGATCCGCCAGGTCCGGGCCTGCAAGAC
CGCGGCGGAGGAGCGGGCGGTGATCGCCACCGAGGGGGCACTGATCCGGA
CGGCCTTCAAGGACGGCAACGAACCCAACCGGGCGAGGAATGTGGCCAAA
TTGCTCTACATGCACATGCTCGGTGAGGCTTCCAGGTGTTGTGCATGGTT
CTGCGTG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75119:80..286-

>mRNA_H-canaliculatus_M_contigs75119.1.1 ID=mRNA_H-canaliculatus_M_contigs75119.1.1|Name=mRNA_H-canaliculatus_M_contigs75119.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=207bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75119:80..286- (Hapterophycus canaliculatus Oshoro7m male)
ATGTCTATCAAGCTGCGGCAGCTGATCCGCCAGGTCCGGGCCTGCAAGAC
CGCGGCGGAGGAGCGGGCGGTGATCGCCACCGAGGGGGCACTGATCCGGA
CGGCCTTCAAGGACGGCAACGAACCCAACCGGGCGAGGAATGTGGCCAAA
TTGCTCTACATGCACATGCTCGGTGAGGCTTCCAGGTGTTGTGCATGGTT
CTGCGTG
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