mRNA_H-canaliculatus_M_contigs75109.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75109.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75109.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs75109.1.1 vs.
Match: Contains (similarity several bacterial glutathione-regulated potassium efflux system proteins n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKF7_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 1.630e-25
Identity = 49/56 (87.50%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:    1 SLLSAPVIKDKLAADYVAFDLNPTRVRQSRAQGFPVFYGDGTEPEVLKTAGMEDPK 168
            SLLS PVIKDKL ADYVAFDLNP RVRQS  QGFPVFYGDGTEPEVLKTAGM +PK
Sbjct:  119 SLLSTPVIKDKLGADYVAFDLNPIRVRQSMEQGFPVFYGDGTEPEVLKTAGMGNPK 174
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BLAST of mRNA_H-canaliculatus_M_contigs75109.1.1 vs.
Match: RCK (N-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAW2_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 6.670e-24
Identity = 49/56 (87.50%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:    1 SLLSAPVIKDKLAADYVAFDLNPTRVRQSRAQGFPVFYGDGTEPEVLKTAGMEDPK 168
            SLLS PVIKDKL ADYVAFDLNP RVRQS  QGFPVFYGDGTEPEVLKTAGM +PK
Sbjct:  625 SLLSTPVIKDKLGADYVAFDLNPKRVRQSMEQGFPVFYGDGTEPEVLKTAGMGNPK 680
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BLAST of mRNA_H-canaliculatus_M_contigs75109.1.1 vs.
Match: Sodium/hydrogen (exchanger family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEK7_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 3.290e-13
Identity = 32/57 (56.14%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    1 SLLSAPVIKDKLA-ADYVAFDLNPTRVRQSRAQGFPVFYGDGTEPEVLKTAGMEDPK 168
            SL+SAP +   L  A +VAFDL+P RV  +RA+G+PVFYGDG++P+V++TAG+ DP+
Sbjct:  465 SLISAPAVSGALCGARFVAFDLDPRRVSAARARGYPVFYGDGSQPKVIETAGIADPR 521
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BLAST of mRNA_H-canaliculatus_M_contigs75109.1.1 vs.
Match: K(+) (efflux antiporter 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF36_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 4.500e-13
Identity = 30/57 (52.63%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:    1 SLLSAPVIKDKLA-ADYVAFDLNPTRVRQSRAQGFPVFYGDGTEPEVLKTAGMEDPK 168
            SL+S+P + + L  A ++AFDLNP RV +SR +G+PV+YGDG++P+V++TAG+ +PK
Sbjct:  554 SLISSPTVSNALNNAKFIAFDLNPKRVSESRKKGYPVYYGDGSQPKVIETAGINNPK 610
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BLAST of mRNA_H-canaliculatus_M_contigs75109.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VBI3_9CRYP)

HSP 1 Score: 66.2 bits (160), Expect = 8.460e-12
Identity = 31/57 (54.39%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    1 SLLSAPVIKDK-LAADYVAFDLNPTRVRQSRAQGFPVFYGDGTEPEVLKTAGMEDPK 168
            SLLS+  +KD+ L  +YVAFDLNP RV + R  G  VFYGDG++P VL+ AG+ +P+
Sbjct:   46 SLLSSQYLKDESLRIEYVAFDLNPQRVDEGRKMGISVFYGDGSQPNVLRAAGVTNPR 102
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BLAST of mRNA_H-canaliculatus_M_contigs75109.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0UF61_HEMAN)

HSP 1 Score: 66.6 bits (161), Expect = 1.910e-11
Identity = 31/57 (54.39%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    1 SLLSAPVIKDK-LAADYVAFDLNPTRVRQSRAQGFPVFYGDGTEPEVLKTAGMEDPK 168
            SLLS+  +KD+ L  DYVAFDLNP RV +   +G  VFYGDG++P VL+ AG+ +P+
Sbjct:  481 SLLSSQYLKDESLRIDYVAFDLNPDRVEEGSKRGIKVFYGDGSQPNVLRAAGVTNPR 537
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BLAST of mRNA_H-canaliculatus_M_contigs75109.1.1 vs.
Match: Glutathione-regulated (potassium-efflux system protein kefB n=2 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2LF10_RHIMU)

HSP 1 Score: 65.5 bits (158), Expect = 4.810e-11
Identity = 31/60 (51.67%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:    1 SLLSAPVIK----DKLAADYVAFDLNPTRVRQSRAQGFPVFYGDGTEPEVLKTAGMEDPK 168
            + LSAP+      D +   YVAFDLNP+ V+ SR  GFP+FYGDG+ PEVL++AG+  P+
Sbjct:  186 NFLSAPLTSGADGDVVGWPYVAFDLNPSVVKASRKLGFPIFYGDGSRPEVLQSAGISSPR 245
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BLAST of mRNA_H-canaliculatus_M_contigs75109.1.1 vs.
Match: RCK (N-terminal domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KM05_CHABU)

HSP 1 Score: 64.7 bits (156), Expect = 9.150e-11
Identity = 31/60 (51.67%), Postives = 41/60 (68.33%), Query Frame = 1 
Query:    1 SLLSAPVI----KDKLAADYVAFDLNPTRVRQSRAQGFPVFYGDGTEPEVLKTAGMEDPK 168
            + LS P+      + +A  YVAFDL P RV+ +R+ GFPVFYGDG+ PEVL TAG+  P+
Sbjct:  909 NFLSTPLATWSNSENVAWPYVAFDLEPKRVKTARSLGFPVFYGDGSRPEVLLTAGINTPR 968
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BLAST of mRNA_H-canaliculatus_M_contigs75109.1.1 vs.
Match: RCK (N-terminal domain-containing protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484KWK8_9ASTE)

HSP 1 Score: 62.0 bits (149), Expect = 1.210e-10
Identity = 30/59 (50.85%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:    1 SLLSAPV---IKDKLAADYVAFDLNPTRVRQSRAQGFPVFYGDGTEPEVLKTAGMEDPK 168
            +LLSAP+   +   +   YVAFDL+P+ V+ SR  GFPV YGDG+ P VL++AG+  PK
Sbjct:   29 NLLSAPLASGLNRGVGCPYVAFDLDPSVVKASRDLGFPVLYGDGSRPSVLRSAGISSPK 87
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BLAST of mRNA_H-canaliculatus_M_contigs75109.1.1 vs.
Match: K(+) (efflux antiporter 3, chloroplastic-like n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8CD855)

HSP 1 Score: 64.3 bits (155), Expect = 1.240e-10
Identity = 27/54 (50.00%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:    7 LSAPVIKDKLAADYVAFDLNPTRVRQSRAQGFPVFYGDGTEPEVLKTAGMEDPK 168
            L++ +  + +   YVAFDLNP+ V++SR  GFP+FYGDG+ P VL++AG+  PK
Sbjct:  434 LASGIDSEPVGWPYVAFDLNPSVVKESRKLGFPIFYGDGSRPSVLQSAGISSPK 487
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75109.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Contains1.630e-2587.50similarity several bacterial glutathione-regulated... [more]
RCK6.670e-2487.50N-terminal domain-containing protein n=1 Tax=Ectoc... [more]
Sodium/hydrogen3.290e-1356.14exchanger family-domain-containing protein n=1 Tax... [more]
K(+)4.500e-1352.63efflux antiporter 3 n=1 Tax=Tribonema minus TaxID=... [more]
Hypothetical8.460e-1254.39protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID... [more]
Hypothetical1.910e-1154.39protein n=1 Tax=Hemiselmis andersenii TaxID=464988... [more]
Glutathione-regulated4.810e-1151.67potassium-efflux system protein kefB n=2 Tax=Rhizo... [more]
RCK9.150e-1151.67N-terminal domain-containing protein n=1 Tax=Chara... [more]
RCK1.210e-1050.85N-terminal domain-containing protein n=1 Tax=Cuscu... [more]
K(+)1.240e-1050.00efflux antiporter 3, chloroplastic-like n=1 Tax=Ca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75109contigH-canaliculatus_M_contigs75109:286..453 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FKF7
PFAMsNa_H_Exchanger,TrkA_N
Model size168
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006810,GO:0006811,GO:0006812,GO:0006996,GO:0008150,GO:0008324,GO:0009314,GO:0009416,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009628,GO:0009642,GO:0009643,GO:0009657,GO:0009658,GO:0009893,GO:0009987,GO:0010109,GO:0015075,GO:0015318,GO:0016020,GO:0016043,GO:0019222,GO:0022857,GO:0022890,GO:0031323,GO:0031325,GO:0031976,GO:0031984,GO:0034220,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0055035,GO:0055085,GO:0065007,GO:0071840,GO:0098655,GO:1905157
Exons1
Evalue2.68e-26
EggNOG OGsCOG0475@1|root,KOG1650@2759|Eukaryota
Ec32 ortholog descriptionNAD(P)-binding domain
Ec32 orthologEc-12_002230.1
Descriptionsolute:proton antiporter activity
Cds size168
COG categoryP
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854088.820661-CDS-H-canaliculatus_M_contigs75109:285..4531696854088.820661-CDS-H-canaliculatus_M_contigs75109:285..453Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75109 286..453 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75109.1.1prot_H-canaliculatus_M_contigs75109.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75109 286..453 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75109.1.1

>prot_H-canaliculatus_M_contigs75109.1.1 ID=prot_H-canaliculatus_M_contigs75109.1.1|Name=mRNA_H-canaliculatus_M_contigs75109.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=56bp
SLLSAPVIKDKLAADYVAFDLNPTRVRQSRAQGFPVFYGDGTEPEVLKTA
GMEDPK
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mRNA from alignment at H-canaliculatus_M_contigs75109:286..453+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75109.1.1 ID=mRNA_H-canaliculatus_M_contigs75109.1.1|Name=mRNA_H-canaliculatus_M_contigs75109.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=168bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75109:286..453+ (Hapterophycus canaliculatus Oshoro7m male)
AGCTTGCTGAGCGCCCCCGTGATCAAGGACAAGCTGGCCGCGGACTACGT
GGCTTTCGATCTCAACCCGACGCGCGTCCGGCAGAGCAGGGCGCAGGGCT
TCCCGGTTTTCTACGGAGACGGCACAGAGCCTGAGGTCCTCAAGACCGCC
GGCATGGAAGATCCGAAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75109:286..453+

>mRNA_H-canaliculatus_M_contigs75109.1.1 ID=mRNA_H-canaliculatus_M_contigs75109.1.1|Name=mRNA_H-canaliculatus_M_contigs75109.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=168bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75109:286..453+ (Hapterophycus canaliculatus Oshoro7m male)
AGCTTGCTGAGCGCCCCCGTGATCAAGGACAAGCTGGCCGCGGACTACGT
GGCTTTCGATCTCAACCCGACGCGCGTCCGGCAGAGCAGGGCGCAGGGCT
TCCCGGTTTTCTACGGAGACGGCACAGAGCCTGAGGTCCTCAAGACCGCC
GGCATGGAAGATCCGAAG
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