mRNA_H-canaliculatus_M_contigs75106.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75106.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75106.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs75106.1.1 vs.
Match: HSF_DOMAIN (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JVV9_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 2.510e-42
Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 1
Query:    1 QVRDHARLSSEVLGRFFKQDKFSSFQRQLNLYGFRKITKGSESGSYQHPHFRRGERTTLLTIRRSTKASPARVVVPVSPAS 243
            +VRDHARLSSEVLGRFFKQDKFSSFQRQLNLYGFRKITKGSESGSYQHPHFRRGERTTLLTIRRSTKASPARV VPVSPAS
Sbjct:   88 EVRDHARLSSEVLGRFFKQDKFSSFQRQLNLYGFRKITKGSESGSYQHPHFRRGERTTLLTIRRSTKASPARVAVPVSPAS 168          
BLAST of mRNA_H-canaliculatus_M_contigs75106.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QFS1_HETAK)

HSP 1 Score: 85.1 bits (209), Expect = 1.690e-16
Identity = 39/68 (57.35%), Postives = 52/68 (76.47%), Query Frame = 1
Query:    4 VRDHARLSSEVLGRFFKQDKFSSFQRQLNLYGFRKITKGSESGSYQHPHFRRGERTTLLTIRRSTKAS 207
            VRD  R S E+L ++F+  KF+SFQRQLNLYGFRKIT+GS++GSY H +FR+G+   L  +RRS  +S
Sbjct:   42 VRDIDRFSKEILMKYFRHSKFASFQRQLNLYGFRKITRGSDAGSYAHQYFRKGKPDLLSLVRRSQSSS 109          
BLAST of mRNA_H-canaliculatus_M_contigs75106.1.1 vs.
Match: HSF-type (DNA-binding-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0U6_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 3.500e-16
Identity = 36/63 (57.14%), Postives = 45/63 (71.43%), Query Frame = 1
Query:    4 VRDHARLSSEVLGRFFKQDKFSSFQRQLNLYGFRKITKGSESGSYQHPHFRRGERTTLLTIRR 192
            +R+      ++L ++FK DKFSSFQRQLNLYGFRKI KG+ESG Y H +FRRG    L  +RR
Sbjct:   31 IREMNAFKDQILPQYFKHDKFSSFQRQLNLYGFRKIVKGNESGCYIHTYFRRGHPELLKQVRR 93          
BLAST of mRNA_H-canaliculatus_M_contigs75106.1.1 vs.
Match: HSF-type (DNA-binding-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z533_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 7.810e-15
Identity = 35/63 (55.56%), Postives = 43/63 (68.25%), Query Frame = 1
Query:    4 VRDHARLSSEVLGRFFKQDKFSSFQRQLNLYGFRKITKGSESGSYQHPHFRRGERTTLLTIRR 192
            ++D  R  ++VL   FK DKFSSFQRQLNLYGFRKI +G E+G Y H  F+RG    L  +RR
Sbjct:   29 IQDMPRFRTQVLPTHFKHDKFSSFQRQLNLYGFRKIVRGKEAGGYMHKDFQRGRADLLPHVRR 91          
BLAST of mRNA_H-canaliculatus_M_contigs75106.1.1 vs.
Match: Heat (Shock transcription factor (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU68_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 1.800e-14
Identity = 34/64 (53.12%), Postives = 47/64 (73.44%), Query Frame = 1
Query:    1 QVRDHARLSSEVLGRFFKQDKFSSFQRQLNLYGFRKITKGSESGSYQHPHFRRGERTTLLTIRR 192
            ++ D  +   E++ RFFKQ+K+SSFQRQLNLYGFRK+ +G+E+G Y HP F RG+   L  +RR
Sbjct:   78 RIGDSEKFCKEIMPRFFKQNKYSSFQRQLNLYGFRKLVRGNEAGGYMHPLFERGKPEQLSQVRR 141          
BLAST of mRNA_H-canaliculatus_M_contigs75106.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D949_HETAK)

HSP 1 Score: 79.3 bits (194), Expect = 1.890e-14
Identity = 36/68 (52.94%), Postives = 49/68 (72.06%), Query Frame = 1
Query:    4 VRDHARLSSEVLGRFFKQDKFSSFQRQLNLYGFRKITKGSESGSYQHPHFRRGERTTLLTIRRSTKAS 207
            VR      +E+L ++FKQ KF+SFQRQLNLYGFRK+TKG +SG+Y H +F RG+   L  +RR T ++
Sbjct:   33 VRQVDEFLNEILPKYFKQSKFASFQRQLNLYGFRKVTKGPDSGAYAHRYFLRGQEQLLHKVRRHTSST 100          
BLAST of mRNA_H-canaliculatus_M_contigs75106.1.1 vs.
Match: HSF_DOMAIN (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLW3_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 1.960e-14
Identity = 34/64 (53.12%), Postives = 47/64 (73.44%), Query Frame = 1
Query:    1 QVRDHARLSSEVLGRFFKQDKFSSFQRQLNLYGFRKITKGSESGSYQHPHFRRGERTTLLTIRR 192
            ++ D  +   E++ RFFKQ+K+SSFQRQLNLYGFRK+ +G+E+G Y HP F RG+   L  +RR
Sbjct:   55 RIGDSEKFCKEIMPRFFKQNKYSSFQRQLNLYGFRKLVRGNEAGGYMHPLFERGKPEQLSQVRR 118          
BLAST of mRNA_H-canaliculatus_M_contigs75106.1.1 vs.
Match: HSF-type (DNA-binding-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN41_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 2.490e-14
Identity = 36/63 (57.14%), Postives = 46/63 (73.02%), Query Frame = 1
Query:    4 VRDHARLSSEVLGRFFKQDKFSSFQRQLNLYGFRKITKGSESGSYQHPHFRRGERTTLLTIRR 192
            +R+ A   +++L ++FK DKFSSFQRQLNLYGFRKI KG ESG Y H +F+RG    L  +RR
Sbjct:   51 IRNMAAFKTKILPQYFKHDKFSSFQRQLNLYGFRKIVKGRESGCYIHCYFQRGHPELLKQVRR 113          
BLAST of mRNA_H-canaliculatus_M_contigs75106.1.1 vs.
Match: HSF-type (DNA-binding-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPY0_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 3.790e-14
Identity = 34/63 (53.97%), Postives = 43/63 (68.25%), Query Frame = 1
Query:    4 VRDHARLSSEVLGRFFKQDKFSSFQRQLNLYGFRKITKGSESGSYQHPHFRRGERTTLLTIRR 192
            ++D A   + +L + FK DKFSSFQRQLNLYGFRKI +G ESG Y H  F+RG    L  ++R
Sbjct:   18 IQDMATFRTVILPKHFKHDKFSSFQRQLNLYGFRKIVRGRESGGYMHKDFQRGRLDLLKHVKR 80          
BLAST of mRNA_H-canaliculatus_M_contigs75106.1.1 vs.
Match: Putative (Heat Shock transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDA5_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 6.250e-14
Identity = 36/69 (52.17%), Postives = 46/69 (66.67%), Query Frame = 1
Query:    1 QVRDHARLSSEVLGRFFKQDKFSSFQRQLNLYGFRKITKGSESGSYQHPHFRRGERTTLLTIRRSTKAS 207
            QV D  R S ++L ++++  KFSSFQRQLNLY FRKI KG+++G Y HP FRR     L  +RRS   S
Sbjct:   40 QVHDVERFSEDILTKYYRHSKFSSFQRQLNLYSFRKIVKGADAGGYAHPMFRRDRPDDLYHVRRSISGS 108          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75106.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
HSF_DOMAIN2.510e-4297.53domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
Hypothetical1.690e-1657.35protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
HSF-type3.500e-1657.14DNA-binding-domain-containing protein (Fragment) n... [more]
HSF-type7.810e-1555.56DNA-binding-domain-containing protein (Fragment) n... [more]
Heat1.800e-1453.13Shock transcription factor (Partial) (Fragment) n=... [more]
Hypothetical1.890e-1452.94protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
HSF_DOMAIN1.960e-1453.13domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
HSF-type2.490e-1457.14DNA-binding-domain-containing protein n=1 Tax=Trib... [more]
HSF-type3.790e-1453.97DNA-binding-domain-containing protein n=1 Tax=Trib... [more]
Putative6.250e-1452.17Heat Shock transcription factor n=1 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75106contigH-canaliculatus_M_contigs75106:45..506 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2850.Phatr42714
PFAMsHSF_DNA-bind
Model size462
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.92e-12
EggNOG OGsCOG5169@1|root,KOG0627@2759|Eukaryota,2XG5V@2836|Bacillariophyta
Ec32 ortholog descriptionHeat Shock transcription factor
Ec32 orthologEc-27_002110.1
Descriptionheat shock factor
Cds size462
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854088.7848096-CDS-H-canaliculatus_M_contigs75106:44..5061696854088.7848096-CDS-H-canaliculatus_M_contigs75106:44..506Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75106 45..506 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75106.1.1prot_H-canaliculatus_M_contigs75106.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75106 45..506 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75106.1.1

>prot_H-canaliculatus_M_contigs75106.1.1 ID=prot_H-canaliculatus_M_contigs75106.1.1|Name=mRNA_H-canaliculatus_M_contigs75106.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=154bp
QVRDHARLSSEVLGRFFKQDKFSSFQRQLNLYGFRKITKGSESGSYQHPH
FRRGERTTLLTIRRSTKASPARVVVPVSPASTGAGTPPPAVPLSSGTSSS
SGGSGSGGKNTKNSHHNSNSNSNDNDNVSATNEQPRSATPSPPPAPVSRG
VLTW
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mRNA from alignment at H-canaliculatus_M_contigs75106:45..506-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75106.1.1 ID=mRNA_H-canaliculatus_M_contigs75106.1.1|Name=mRNA_H-canaliculatus_M_contigs75106.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=462bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75106:45..506- (Hapterophycus canaliculatus Oshoro7m male)
CAGGTGCGCGACCACGCTCGGCTGAGCTCCGAGGTGCTCGGCCGCTTCTT CAAGCAGGACAAGTTCTCGAGTTTCCAGCGCCAGCTGAACCTGTACGGCT TCCGCAAGATCACGAAGGGCAGCGAGAGCGGCTCCTACCAGCACCCCCAC TTCCGCCGCGGAGAGCGCACCACCCTGCTCACCATCCGCCGCTCGACGAA GGCCTCGCCCGCTCGCGTCGTCGTGCCCGTCTCCCCCGCGTCCACCGGCG CGGGCACACCCCCGCCGGCTGTCCCGCTTAGCAGCGGCACCAGCAGCAGC AGCGGTGGCAGCGGTAGCGGCGGCAAGAACACCAAGAACAGCCACCACAA CAGCAACAGCAACAGCAACGACAACGACAACGTCTCCGCTACGAACGAGC AGCCACGATCGGCAACCCCAAGTCCGCCCCCTGCCCCGGTGTCCCGCGGG GTGCTGACTTGG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75106:45..506-

>mRNA_H-canaliculatus_M_contigs75106.1.1 ID=mRNA_H-canaliculatus_M_contigs75106.1.1|Name=mRNA_H-canaliculatus_M_contigs75106.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=462bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75106:45..506- (Hapterophycus canaliculatus Oshoro7m male)
CAGGTGCGCGACCACGCTCGGCTGAGCTCCGAGGTGCTCGGCCGCTTCTT
CAAGCAGGACAAGTTCTCGAGTTTCCAGCGCCAGCTGAACCTGTACGGCT
TCCGCAAGATCACGAAGGGCAGCGAGAGCGGCTCCTACCAGCACCCCCAC
TTCCGCCGCGGAGAGCGCACCACCCTGCTCACCATCCGCCGCTCGACGAA
GGCCTCGCCCGCTCGCGTCGTCGTGCCCGTCTCCCCCGCGTCCACCGGCG
CGGGCACACCCCCGCCGGCTGTCCCGCTTAGCAGCGGCACCAGCAGCAGC
AGCGGTGGCAGCGGTAGCGGCGGCAAGAACACCAAGAACAGCCACCACAA
CAGCAACAGCAACAGCAACGACAACGACAACGTCTCCGCTACGAACGAGC
AGCCACGATCGGCAACCCCAAGTCCGCCCCCTGCCCCGGTGTCCCGCGGG
GTGCTGACTTGG
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