mRNA_H-canaliculatus_M_contigs75099.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75099.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75099.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs75099.1.1 vs.
Match: 4Fe-4S (ferredoxin-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQQ5_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 7.370e-32
Identity = 58/77 (75.32%), Postives = 64/77 (83.12%), Query Frame = 1 
Query:    1 VNTENSHRAPGCPIPHPSLEVNQHQSSLWNGAAASGRVPRAVPRNAQGCVDCGSCLHGCAHGKKQSTHVRGVVVVTG 231
            VN  NSHRAPG P+P+ SL VNQHQSSLWNGAAASGRVPRAVP N + CVDCGSCLHGCA+G KQSTHV  V++  G
Sbjct:  615 VNIGNSHRAPGFPVPNASLRVNQHQSSLWNGAAASGRVPRAVPTNTKECVDCGSCLHGCAYGSKQSTHVERVLMDAG 691
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BLAST of mRNA_H-canaliculatus_M_contigs75099.1.1 vs.
Match: Oxidoreductase (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5T1_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 3.560e-31
Identity = 56/69 (81.16%), Postives = 60/69 (86.96%), Query Frame = 1 
Query:    1 VNTENSHRAPGCPIPHPSLEVNQHQSSLWNGAAASGRVPRAVPRNAQGCVDCGSCLHGCAHGKKQSTHV 207
            VN  NSHRAPG P+P+ SL VNQHQSSLWNGAAASGRVPRAVP N + CVDCGSCLHGCA+G KQSTHV
Sbjct:  523 VNIGNSHRAPGFPVPNASLRVNQHQSSLWNGAAASGRVPRAVPTNTKDCVDCGSCLHGCAYGSKQSTHV 591
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BLAST of mRNA_H-canaliculatus_M_contigs75099.1.1 vs.
Match: Long-chain-alcohol (oxidase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UJN9_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 7.390e-9
Identity = 29/49 (59.18%), Postives = 31/49 (63.27%), Query Frame = 1 
Query:   61 VNQHQSSLWNGAAASGRVPRAVPRNAQGCVDCGSCLHGCAHGKKQSTHV 207
            VN     L  GA A G   RAVPRN +GCVDCGSC HGC +G KQ T V
Sbjct:  436 VNAANDFLVEGAHALGMPCRAVPRNVKGCVDCGSCSHGCVYGAKQGTLV 484
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BLAST of mRNA_H-canaliculatus_M_contigs75099.1.1 vs.
Match: Glucose-methanol-choline (oxidoreductase n=1 Tax=Armatimonadetes bacterium CSP1-3 TaxID=1640515 RepID=A0A0T6ARJ3_9BACT)

HSP 1 Score: 56.6 bits (135), Expect = 1.630e-7
Identity = 30/69 (43.48%), Postives = 34/69 (49.28%), Query Frame = 1 
Query:    1 VNTENSHRAPGCPIPHPSLEVNQHQSSLWNGAAASGRVPRAVPRNAQGCVDCGSCLHGCAHGKKQSTHV 207
            VNT  SHR             N +  +LW+GA A G     VPRN QGC DCG C +GC H  KQ   V
Sbjct:   76 VNTLESHR-------------NPNNQALWDGARALGYRVETVPRNVQGCGDCGPCAYGCPHRAKQDALV 131
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75099.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
4Fe-4S7.370e-3275.32ferredoxin-type domain-containing protein n=1 Tax=... [more]
Oxidoreductase3.560e-3181.16n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
Long-chain-alcohol7.390e-959.18oxidase n=1 Tax=Phaeomonas parva TaxID=124430 RepI... [more]
Glucose-methanol-choline1.630e-743.48oxidoreductase n=1 Tax=Armatimonadetes bacterium C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75099contigH-canaliculatus_M_contigs75099:281..517 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G5T1
PFAMsGMC_oxred_C,GMC_oxred_N
Model size237
Max annot lvl2759|Eukaryota
KEGG koko:K17756
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0008150,GO:0008152,GO:0016491,GO:0044464,GO:0055114
Exons1
Evalue5.84e-32
EggNOG OGsCOG2303@1|root,2QSD8@2759|Eukaryota
EC1.1.3.20
Descriptionlong-chain-alcohol oxidase activity
Cds size237
COG categoryE
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854088.666497-CDS-H-canaliculatus_M_contigs75099:280..5171696854088.666497-CDS-H-canaliculatus_M_contigs75099:280..517Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75099 281..517 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75099.1.1prot_H-canaliculatus_M_contigs75099.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75099 281..517 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75099.1.1

>prot_H-canaliculatus_M_contigs75099.1.1 ID=prot_H-canaliculatus_M_contigs75099.1.1|Name=mRNA_H-canaliculatus_M_contigs75099.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=79bp
VNTENSHRAPGCPIPHPSLEVNQHQSSLWNGAAASGRVPRAVPRNAQGCV
DCGSCLHGCAHGKKQSTHVRGVVVVTGS*
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mRNA from alignment at H-canaliculatus_M_contigs75099:281..517-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75099.1.1 ID=mRNA_H-canaliculatus_M_contigs75099.1.1|Name=mRNA_H-canaliculatus_M_contigs75099.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=237bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75099:281..517- (Hapterophycus canaliculatus Oshoro7m male)
GTGAACACCGAGAATTCTCACCGGGCCCCCGGCTGCCCCATACCTCACCC
GTCGCTGGAGGTGAACCAACACCAGTCCAGCTTGTGGAACGGGGCGGCGG
CATCCGGCCGCGTTCCTAGGGCCGTCCCCAGAAACGCCCAGGGGTGTGTC
GACTGCGGGAGCTGCTTGCACGGCTGCGCGCATGGCAAAAAACAATCTAC
GCATGTGAGGGGGGTCGTGGTGGTCACTGGAAGTTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75099:281..517-

>mRNA_H-canaliculatus_M_contigs75099.1.1 ID=mRNA_H-canaliculatus_M_contigs75099.1.1|Name=mRNA_H-canaliculatus_M_contigs75099.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=237bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75099:281..517- (Hapterophycus canaliculatus Oshoro7m male)
GTGAACACCGAGAATTCTCACCGGGCCCCCGGCTGCCCCATACCTCACCC
GTCGCTGGAGGTGAACCAACACCAGTCCAGCTTGTGGAACGGGGCGGCGG
CATCCGGCCGCGTTCCTAGGGCCGTCCCCAGAAACGCCCAGGGGTGTGTC
GACTGCGGGAGCTGCTTGCACGGCTGCGCGCATGGCAAAAAACAATCTAC
GCATGTGAGGGGGGTCGTGGTGGTCACTGGAAGTTGA
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