mRNA_H-canaliculatus_M_contigs7507.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7507.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7507.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7507.1.1 vs.
Match: Chain (A, Crystal Structure Of A Designed Full Consensus Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJC8_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 2.660e-39
Identity = 62/80 (77.50%), Postives = 73/80 (91.25%), Query Frame = 1
Query:   13 RAAQLGQIEIVQEMVVANGIELDAQDYNGWTPLMHACCRGHKSVVGTLLAAGASLEIESHDGRTATHRAATWKRLGPLDQ 252
            RA+QLGQI+++QE++ A+ IEL+AQD NGWTPLMHAC RGH+SVVG LL AGAS++IESHDGRTA HRAATWKRLGPLDQ
Sbjct:   49 RASQLGQIDVIQELIAADAIELNAQDGNGWTPLMHACARGHRSVVGALLTAGASVDIESHDGRTALHRAATWKRLGPLDQ 128          
BLAST of mRNA_H-canaliculatus_M_contigs7507.1.1 vs.
Match: Calpain (catalytic domain-containing protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D4E6_THETB)

HSP 1 Score: 60.8 bits (146), Expect = 1.530e-8
Identity = 35/84 (41.67%), Postives = 47/84 (55.95%), Query Frame = 1
Query:   58 VANGIELDAQDYNGWTPLMHACCRGHKSVVGTLLAAGASLEIESHDGRTATHRAATWKRLGPLDQ-------VPTEESGPEAYS 288
            V  G  +D +D  G+TPL+ A   GHKSVV +LLAAGA++     +GR+A H AA+ K   PL          P   +GPE Y+
Sbjct:  405 VEAGAAVDTRDTRGFTPLLLAVRNGHKSVVNSLLAAGANVNTRDANGRSALHYAASEKLAAPLASDLMSAGASPQLRAGPELYT 488          
BLAST of mRNA_H-canaliculatus_M_contigs7507.1.1 vs.
Match: EsV-1-199 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVK3_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 7.770e-7
Identity = 29/72 (40.28%), Postives = 41/72 (56.94%), Query Frame = 1
Query:    7 LSRAAQLGQIEIVQEMVVANGIELDAQDYNGWTPLMHACCRGHKSVVGTLLAAGASLEIESHDGRTATHRAA 222
            L  AA+ G   +   ++    I++D  D +G TPLMHA C  H SVV  LL+ GAS+   + +G TA H +A
Sbjct:   18 LHEAARDGSTWLTAAILSTGSIDIDGGDSSGGTPLMHAICNDHPSVVSILLSKGASVSAINDEGNTALHLSA 89          
BLAST of mRNA_H-canaliculatus_M_contigs7507.1.1 vs.
Match: Hypothetical (protein n=2 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H3GC40_9AGAM)

HSP 1 Score: 54.3 bits (129), Expect = 2.780e-6
Identity = 26/66 (39.39%), Postives = 41/66 (62.12%), Query Frame = 1
Query:   16 AAQLGQIEIVQEMVVANGIELDAQDYNGWTPLMHACCRGHKSVVGTLLAAGASLEIESHDGRTATH 213
            AA++  +E VQ+ +   G+EL+ +D+ G TPL+ A   GHK ++  LLAAGA +   S  G+  T+
Sbjct:   10 AAEVQDLESVQQQLKEPGVELEIKDHAGTTPLIQAVRNGHKDIIKALLAAGADINNASSQGKPETY 75          
BLAST of mRNA_H-canaliculatus_M_contigs7507.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A2P4QKQ1_RHIID)

HSP 1 Score: 52.4 bits (124), Expect = 6.170e-6
Identity = 28/63 (44.44%), Postives = 41/63 (65.08%), Query Frame = 1
Query:    4 VLSRAAQLGQIEIVQEMVVANG--IELDAQDYNGWTPLMHACCRGHKSVVGTLLAAGASLEIE 186
            + +RAA  G +E V  M+  +   I+LDAQD  G TPL++ACC  H++V  TLL AGA ++ +
Sbjct:  121 IFTRAASNGNLEKVSSMLENSKEYIDLDAQDEEGTTPLIYACCFAHETVAYTLLEAGAKVDAK 183          
BLAST of mRNA_H-canaliculatus_M_contigs7507.1.1 vs.
Match: putative (ankyrin repeat protein RF_0381 n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE53662)

HSP 1 Score: 52.8 bits (125), Expect = 9.150e-6
Identity = 23/62 (37.10%), Postives = 38/62 (61.29%), Query Frame = 1
Query:   28 GQIEIVQEMVVANGIELDAQDYNGWTPLMHACCRGHKSVVGTLLAAGASLEIESHDGRTATH 213
            G + I+Q ++    +++D+QD +GWTP+MHA   GHK  +  L+  GA L + ++D  T  H
Sbjct:  245 GNVGILQYLLKHGVVDIDSQDVDGWTPVMHAVNAGHKDALAFLVEQGADLLLVNNDKETILH 306          
BLAST of mRNA_H-canaliculatus_M_contigs7507.1.1 vs.
Match: Hypothetical (protein (Fragment) n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0K7C3_CAFRO)

HSP 1 Score: 52.4 bits (124), Expect = 9.500e-6
Identity = 29/73 (39.73%), Postives = 42/73 (57.53%), Query Frame = 1
Query:    7 LSRAAQLGQIEIVQEMVVANGIELDAQDYNGWTPLMHACCRGHKSVVGTLLAAGASLEIESHDGRTATHRAAT 225
            L RAA+LG +E + E+V   G++ + QD+   TPL  A   GHK+ V  LL+ GA  +  + DG  A + A T
Sbjct:   74 LHRAARLGDVEAIDELVRLAGVDPNTQDFFNATPLYLAAYCGHKAAVVKLLSLGARCDPGTFDGERAVYGALT 146          
BLAST of mRNA_H-canaliculatus_M_contigs7507.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Trichoderma harzianum TaxID=5544 RepID=A0A2K0UN12_TRIHA)

HSP 1 Score: 52.4 bits (124), Expect = 1.390e-5
Identity = 30/81 (37.04%), Postives = 47/81 (58.02%), Query Frame = 1
Query:   22 QLGQIEIVQEMV--VANGIELDAQDYNGWTPLMHACCRGHKS---VVGTLLAAGASLEIESHDGRTATHRAATWKRLGPLD 249
            Q G  + +Q+M   +  G++++A+D  GWTPL +ACC   K+   VV  LL  GAS++++  +G    H AA   R G L+
Sbjct:  728 QAGSEQFLQKMRRWIEQGVDINARDIRGWTPLHYACCCAGKTSTQVVQLLLEKGASVDVQGREGTAPIHCAA---RAGHLE 805          
BLAST of mRNA_H-canaliculatus_M_contigs7507.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Valsa malicola TaxID=356882 RepID=A0A423X483_9PEZI)

HSP 1 Score: 50.8 bits (120), Expect = 1.810e-5
Identity = 26/56 (46.43%), Postives = 34/56 (60.71%), Query Frame = 1
Query:   67 GIELDAQDYNGWTPLMHACCRGHKSVVGTLLAAGASLEIESHDGRTATHRAATWKR 234
            G++ DA D +G TPLMHA   GH +VV  LLAAGA  +   H  R+  H A  ++R
Sbjct:   22 GMDPDAPDSDGRTPLMHAVVAGHPAVVRALLAAGARCDAVDHMQRSVLHLAVLYRR 77          
BLAST of mRNA_H-canaliculatus_M_contigs7507.1.1 vs.
Match: Hypothetical (protein n=5 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H3H741_9AGAM)

HSP 1 Score: 51.6 bits (122), Expect = 2.470e-5
Identity = 29/93 (31.18%), Postives = 48/93 (51.61%), Query Frame = 1
Query:   16 AAQLGQIEIVQEMVVANGIELDAQDYNGWTPLMHACCRGHKSVVGTLLAAGASLEIESHDGRTATHRA----ATWKRLGPLDQVPTEESGPEA 282
            AA++  +E VQ+ +   G++L+ +D+ G T L+ A   GHK ++  LLAAGA +   S  G+  T+          +  P    PT E  P++
Sbjct:   10 AAEVQDLESVQQQLKEPGVDLEIKDHTGTTALIQAVRNGHKDIIKALLAAGADINNASDQGKPETYTTDPEILALLQAKPAVAQPTYEGYPQS 102          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7507.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
Chain2.660e-3977.50A, Crystal Structure Of A Designed Full Consensus ... [more]
Calpain1.530e-841.67catalytic domain-containing protein n=1 Tax=Thecam... [more]
EsV-1-1997.770e-740.28n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
Hypothetical2.780e-639.39protein n=2 Tax=Rhizoctonia solani TaxID=456999 Re... [more]
Uncharacterized6.170e-644.44protein n=2 Tax=Rhizophagus irregularis TaxID=5885... [more]
putative9.150e-637.10ankyrin repeat protein RF_0381 n=1 Tax=Haliotis ru... [more]
Hypothetical9.500e-639.73protein (Fragment) n=2 Tax=Cafeteria roenbergensis... [more]
Uncharacterized1.390e-537.04protein n=1 Tax=Trichoderma harzianum TaxID=5544 R... [more]
Uncharacterized1.810e-546.43protein n=1 Tax=Valsa malicola TaxID=356882 RepID=... [more]
Hypothetical2.470e-531.18protein n=5 Tax=Rhizoctonia solani TaxID=456999 Re... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7507contigH-canaliculatus_M_contigs7507:1016..1330 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FJC8
Preferred nameANKRD42
PFAMsAnk,Ank_2,Ank_3,Ank_4,Ank_5,Pkinase_Tyr
Model size315
Max annot lvl2759|Eukaryota
KEGG koko:K06694,ko:K15502,ko:K17593
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.36e-40
EggNOG OGsCOG0666@1|root,KOG4412@2759|Eukaryota
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-14_005850.1
Descriptionproteasome regulatory particle assembly
Cds size315
COG categoryL
BRITEko00000,ko01009,ko03051,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854088.5860143-CDS-H-canaliculatus_M_contigs7507:1015..13301696854088.5860143-CDS-H-canaliculatus_M_contigs7507:1015..1330Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7507 1016..1330 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7507.1.1prot_H-canaliculatus_M_contigs7507.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7507 1016..1330 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7507.1.1

>prot_H-canaliculatus_M_contigs7507.1.1 ID=prot_H-canaliculatus_M_contigs7507.1.1|Name=mRNA_H-canaliculatus_M_contigs7507.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=105bp
LVLSRAAQLGQIEIVQEMVVANGIELDAQDYNGWTPLMHACCRGHKSVVG
TLLAAGASLEIESHDGRTATHRAATWKRLGPLDQVPTEESGPEAYSSCKN
KAQS*
back to top

mRNA from alignment at H-canaliculatus_M_contigs7507:1016..1330+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7507.1.1 ID=mRNA_H-canaliculatus_M_contigs7507.1.1|Name=mRNA_H-canaliculatus_M_contigs7507.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=315bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7507:1016..1330+ (Hapterophycus canaliculatus Oshoro7m male)
TTGGTTCTCTCAAGGGCTGCCCAGCTAGGTCAGATCGAAATCGTCCAGGA AATGGTTGTAGCAAACGGAATAGAGCTGGATGCACAGGACTACAACGGCT GGACGCCACTCATGCACGCCTGCTGCCGCGGGCACAAGTCGGTTGTTGGG ACGCTGCTGGCCGCCGGCGCGAGCTTGGAAATCGAGAGCCACGACGGACG AACGGCGACTCATCGAGCAGCCACGTGGAAAAGGCTCGGTCCGCTCGACC AGGTACCAACAGAAGAGAGTGGGCCGGAGGCGTACTCGAGCTGCAAAAAT AAAGCTCAAAGTTAA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7507:1016..1330+

>mRNA_H-canaliculatus_M_contigs7507.1.1 ID=mRNA_H-canaliculatus_M_contigs7507.1.1|Name=mRNA_H-canaliculatus_M_contigs7507.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=315bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7507:1016..1330+ (Hapterophycus canaliculatus Oshoro7m male)
TTGGTTCTCTCAAGGGCTGCCCAGCTAGGTCAGATCGAAATCGTCCAGGA
AATGGTTGTAGCAAACGGAATAGAGCTGGATGCACAGGACTACAACGGCT
GGACGCCACTCATGCACGCCTGCTGCCGCGGGCACAAGTCGGTTGTTGGG
ACGCTGCTGGCCGCCGGCGCGAGCTTGGAAATCGAGAGCCACGACGGACG
AACGGCGACTCATCGAGCAGCCACGTGGAAAAGGCTCGGTCCGCTCGACC
AGGTACCAACAGAAGAGAGTGGGCCGGAGGCGTACTCGAGCTGCAAAAAT
AAAGCTCAAAGTTAA
back to top