mRNA_H-canaliculatus_M_contigs7506.2.2 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7506.2.2
Unique NamemRNA_H-canaliculatus_M_contigs7506.2.2
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7506.2.2 vs.
Match: 2Fe-2S (ferredoxin-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDL2_ECTSI)

HSP 1 Score: 186 bits (471), Expect = 8.070e-58
Identity = 87/97 (89.69%), Postives = 94/97 (96.91%), Query Frame = 1
Query:   43 SVEITWQSKDGSKKTTAKCGMNLMRVAHKHGIDLEGACEGVCACSTCHIILDGEVFDELPEASEDEEDMLDLAFGLTETSRLGCQVIVTPEMDGIVV 333
            +V+ITW++KDG KKTTAKCGMNLMRVAHKHGIDLEGACEGVCACSTCH+I+  EVFD+LPEASEDEEDMLDLAFGLTETSRLGCQVIVTPEMDGIVV
Sbjct:   84 TVQITWENKDGLKKTTAKCGMNLMRVAHKHGIDLEGACEGVCACSTCHVIMSNEVFDQLPEASEDEEDMLDLAFGLTETSRLGCQVIVTPEMDGIVV 180          
BLAST of mRNA_H-canaliculatus_M_contigs7506.2.2 vs.
Match: 2Fe-2S (ferredoxin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C6V2_9STRA)

HSP 1 Score: 147 bits (371), Expect = 7.830e-43
Identity = 71/104 (68.27%), Postives = 83/104 (79.81%), Query Frame = 1
Query:   28 LCNYTSVEITWQSKDGSKKTT-AKCGMNLMRVAHKHGIDLEGACEGVCACSTCHIILDGEVFDELPEASEDEEDMLDLAFGLTETSRLGCQVIVTPEMDGIVVS 336
              N  +V I W++K G  +T  A  GMNLMRVAHKH I+LEGACEGVCACSTCH+IL+ +++  LPE SEDEEDMLD AFGLT TSRLGCQV+VTPEMDGI V+
Sbjct:   63 FANAPNVTINWRNKHGEVRTVDAPVGMNLMRVAHKHDIELEGACEGVCACSTCHVILEDDIYAALPEPSEDEEDMLDQAFGLTATSRLGCQVVVTPEMDGITVT 166          
BLAST of mRNA_H-canaliculatus_M_contigs7506.2.2 vs.
Match: 2Fe-2S (ferredoxin n=1 Tax=Alphaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_44_7 TaxID=1973901 RepID=A0A2H0QFZ7_9PROT)

HSP 1 Score: 129 bits (323), Expect = 1.670e-36
Identity = 62/95 (65.26%), Postives = 78/95 (82.11%), Query Frame = 1
Query:   52 ITWQSKDGSKKTT-AKCGMNLMRVAHKHGIDLEGACEGVCACSTCHIILDGEVFDELPEASEDEEDMLDLAFGLTETSRLGCQVIVTPEMDGIVV 333
            + ++ KDGS K+  A  G++++ VAHK+ IDLEGACEG  ACSTCH+I++ E FD LPEASEDEEDMLDLAFGLT TSRLGCQ+I++ E+DGI V
Sbjct:    4 VNFRLKDGSVKSIDAPVGLSILEVAHKNDIDLEGACEGSLACSTCHVIVEEEFFDRLPEASEDEEDMLDLAFGLTHTSRLGCQIIISEELDGITV 98          
BLAST of mRNA_H-canaliculatus_M_contigs7506.2.2 vs.
Match: Hypothetical (protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3SGD3_9STRA)

HSP 1 Score: 130 bits (328), Expect = 1.820e-36
Identity = 61/87 (70.11%), Postives = 74/87 (85.06%), Query Frame = 1
Query:   76 SKKTTAKCGMNLMRVAHKHGIDLEGACEGVCACSTCHIILDGEVFDELPEASEDEEDMLDLAFGLTETSRLGCQVIVTPEMDGIVVS 336
            +K   A+ G +L++ AH+H IDLEGACEGVCACSTCH+IL  +VFD LPEASEDEEDMLD+AFGL+ TSRLGCQVIVT EM+G+ V+
Sbjct:   68 TKTVKARVGESLLQTAHRHHIDLEGACEGVCACSTCHVILSDDVFDSLPEASEDEEDMLDMAFGLSATSRLGCQVIVTDEMEGMEVN 154          
BLAST of mRNA_H-canaliculatus_M_contigs7506.2.2 vs.
Match: Ferredoxin, (2Fe-2S n=1 Tax=Caenispirillum bisanense TaxID=414052 RepID=A0A286GLE3_9PROT)

HSP 1 Score: 127 bits (320), Expect = 4.770e-36
Identity = 60/96 (62.50%), Postives = 81/96 (84.38%), Query Frame = 1
Query:   49 EITWQSKDGSKKT-TAKCGMNLMRVAHKHGIDLEGACEGVCACSTCHIILDGEVFDELPEASEDEEDMLDLAFGLTETSRLGCQVIVTPEMDGIVV 333
            +IT+  KDG  +T  A  G++++ VAH+H IDLEGACEG  ACSTCH+++D + +++LPEASEDEEDMLDLAFGLT+TSRLGCQ+I+T ++DG+VV
Sbjct:    3 KITFIDKDGEAQTYDAPEGLSVLEVAHRHSIDLEGACEGSLACSTCHVVVDPDWYEKLPEASEDEEDMLDLAFGLTKTSRLGCQIIMTDDLDGLVV 98          
BLAST of mRNA_H-canaliculatus_M_contigs7506.2.2 vs.
Match: 2Fe-2S (ferredoxin n=1 Tax=Alphaproteobacteria bacterium 33-17 TaxID=1895704 RepID=A0A1Q3PDA0_9PROT)

HSP 1 Score: 125 bits (314), Expect = 3.790e-35
Identity = 60/98 (61.22%), Postives = 78/98 (79.59%), Query Frame = 1
Query:   43 SVEITWQSKDGSKKTT-AKCGMNLMRVAHKHGIDLEGACEGVCACSTCHIILDGEVFDELPEASEDEEDMLDLAFGLTETSRLGCQVIVTPEMDGIVV 333
            ++++ +   DG+ KT  A  G++L+ VAH + IDLEGACEG  ACSTCH+++D E FD+LPEASEDEEDMLDLAFGLT TSRLGCQ+I+T  +DG+ V
Sbjct:    3 TIKVNFLETDGTVKTVEAPLGVSLLEVAHSNDIDLEGACEGSLACSTCHVVVDEEWFDKLPEASEDEEDMLDLAFGLTHTSRLGCQIIMTEGLDGLTV 100          
BLAST of mRNA_H-canaliculatus_M_contigs7506.2.2 vs.
Match: 2Fe-2S (ferredoxin n=2 Tax=Acidiphilium TaxID=522 RepID=A0A257UWR7_9PROT)

HSP 1 Score: 125 bits (314), Expect = 3.900e-35
Identity = 56/90 (62.22%), Postives = 77/90 (85.56%), Query Frame = 1
Query:   67 KDGSKKTT-AKCGMNLMRVAHKHGIDLEGACEGVCACSTCHIILDGEVFDELPEASEDEEDMLDLAFGLTETSRLGCQVIVTPEMDGIVV 333
            +DGS++T  A  G++++ VAHKHG+D+EGACEG  ACSTCH+I+D + +D L +ASEDEEDMLDLAFGL +TSRLGCQ++++P +DG+VV
Sbjct:    9 RDGSRRTVDAPVGLSVLEVAHKHGVDIEGACEGSLACSTCHVIVDPDWYDRLGKASEDEEDMLDLAFGLEKTSRLGCQIVMSPSLDGLVV 98          
BLAST of mRNA_H-canaliculatus_M_contigs7506.2.2 vs.
Match: ferredoxin (family 2Fe-2S iron-sulfur cluster binding protein n=1 Tax=Azospirillum oleiclasticum TaxID=2735135 RepID=UPI0015D50714)

HSP 1 Score: 125 bits (313), Expect = 5.540e-35
Identity = 59/96 (61.46%), Postives = 79/96 (82.29%), Query Frame = 1
Query:   49 EITWQSKDGSK-KTTAKCGMNLMRVAHKHGIDLEGACEGVCACSTCHIILDGEVFDELPEASEDEEDMLDLAFGLTETSRLGCQVIVTPEMDGIVV 333
            ++T+   DG++ +  A  G++++ VAHKHG DLEGACEG  ACSTCH+I++ E +D LP+A+EDEEDMLDLAFGLT+TSRLGCQ+IVT E+DG+ V
Sbjct:    3 KMTFIQTDGTRNEVDAPLGLSVLEVAHKHGYDLEGACEGSLACSTCHVIVEPEWYDLLPDATEDEEDMLDLAFGLTKTSRLGCQIIVTEELDGLTV 98          
BLAST of mRNA_H-canaliculatus_M_contigs7506.2.2 vs.
Match: 2Fe-2S (iron-sulfur cluster binding domain-containing protein n=2 Tax=Azospirillum TaxID=191 RepID=A0A433JC60_9PROT)

HSP 1 Score: 124 bits (312), Expect = 7.630e-35
Identity = 56/96 (58.33%), Postives = 80/96 (83.33%), Query Frame = 1
Query:   49 EITWQSKDGSKKTT-AKCGMNLMRVAHKHGIDLEGACEGVCACSTCHIILDGEVFDELPEASEDEEDMLDLAFGLTETSRLGCQVIVTPEMDGIVV 333
            ++T+   DG+++   A  G++++ +AHKH +DLEGACEG  ACSTCH++++ E +D LP+A+EDEEDMLDLAFGLT+TSRLGCQ+I+T E+DG+VV
Sbjct:    3 KMTFIETDGNRREVEAPLGLSVLEIAHKHSLDLEGACEGSLACSTCHVVIEPEWYDVLPDAAEDEEDMLDLAFGLTKTSRLGCQIIMTEELDGLVV 98          
BLAST of mRNA_H-canaliculatus_M_contigs7506.2.2 vs.
Match: Ferredoxin, (2Fe-2S n=1 Tax=Caenispirillum salinarum AK4 TaxID=1238182 RepID=K9H692_9PROT)

HSP 1 Score: 124 bits (310), Expect = 1.540e-34
Identity = 58/96 (60.42%), Postives = 79/96 (82.29%), Query Frame = 1
Query:   49 EITWQSKDGSKKT-TAKCGMNLMRVAHKHGIDLEGACEGVCACSTCHIILDGEVFDELPEASEDEEDMLDLAFGLTETSRLGCQVIVTPEMDGIVV 333
            +IT+  +DG  +T  A  G++++ VAH+HGID+EGACEG  ACSTCH++++ E FD+L EASEDEEDMLDLAFGLT+TSRLGCQ+I+  ++DG+ V
Sbjct:    3 KITFIDRDGEAQTFDAPEGLSVLEVAHRHGIDIEGACEGSLACSTCHVVVEPEWFDKLSEASEDEEDMLDLAFGLTKTSRLGCQIILNDDLDGLTV 98          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7506.2.2 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
2Fe-2S8.070e-5889.69ferredoxin-type domain-containing protein n=2 Tax=... [more]
2Fe-2S7.830e-4368.27ferredoxin-type domain-containing protein n=1 Tax=... [more]
2Fe-2S1.670e-3665.26ferredoxin n=1 Tax=Alphaproteobacteria bacterium C... [more]
Hypothetical1.820e-3670.11protein n=1 Tax=Ditylum brightwellii TaxID=49249 R... [more]
Ferredoxin,4.770e-3662.502Fe-2S n=1 Tax=Caenispirillum bisanense TaxID=4140... [more]
2Fe-2S3.790e-3561.22ferredoxin n=1 Tax=Alphaproteobacteria bacterium 3... [more]
2Fe-2S3.900e-3562.22ferredoxin n=2 Tax=Acidiphilium TaxID=522 RepID=A0... [more]
ferredoxin5.540e-3561.46family 2Fe-2S iron-sulfur cluster binding protein ... [more]
2Fe-2S7.630e-3558.33iron-sulfur cluster binding domain-containing prot... [more]
Ferredoxin,1.540e-3460.422Fe-2S n=1 Tax=Caenispirillum salinarum AK4 TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7506contigH-canaliculatus_M_contigs7506:2172..3388 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LDL2
Preferred nameFDX1L
PFAMsFer2
Model size336
Max annot lvl2759|Eukaryota
KEGG koko:K22071
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006091,GO:0006629,GO:0006694,GO:0006700,GO:0006790,GO:0007553,GO:0007554,GO:0008150,GO:0008152,GO:0008202,GO:0008207,GO:0008610,GO:0009055,GO:0009058,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010565,GO:0010566,GO:0010817,GO:0010893,GO:0016043,GO:0016125,GO:0016226,GO:0016491,GO:0019216,GO:0019218,GO:0019222,GO:0022607,GO:0022900,GO:0031163,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0032350,GO:0032352,GO:0034754,GO:0042445,GO:0042446,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045834,GO:0045940,GO:0045966,GO:0045998,GO:0046885,GO:0046886,GO:0046889,GO:0046890,GO:0048037,GO:0048518,GO:0048522,GO:0048580,GO:0048582,GO:0050789,GO:0050793,GO:0050794,GO:0050810,GO:0051094,GO:0051186,GO:0051239,GO:0051240,GO:0051536,GO:0051537,GO:0051540,GO:0055114,GO:0062012,GO:0062013,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090030,GO:0090031,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:2000026
Exons3
Evalue1.32e-58
EggNOG OGsCOG0633@1|root,KOG3309@2759|Eukaryota
Description2 iron, 2 sulfur cluster binding
Cds size336
COG categoryC
BRITEko00000,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854088.486661-CDS-H-canaliculatus_M_contigs7506:2171..22291696854088.486661-CDS-H-canaliculatus_M_contigs7506:2171..2229Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7506 2172..2229 -
1696854088.502108-CDS-H-canaliculatus_M_contigs7506:2533..26631696854088.502108-CDS-H-canaliculatus_M_contigs7506:2533..2663Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7506 2534..2663 -
1696854088.5215554-CDS-H-canaliculatus_M_contigs7506:3240..33881696854088.5215554-CDS-H-canaliculatus_M_contigs7506:3240..3388Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7506 3241..3388 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7506.2.2prot_H-canaliculatus_M_contigs7506.2.2Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7506 2172..3388 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7506.2.2

>prot_H-canaliculatus_M_contigs7506.2.2 ID=prot_H-canaliculatus_M_contigs7506.2.2|Name=mRNA_H-canaliculatus_M_contigs7506.2.2|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=112bp
PVPTTNPVRLCNYTSVEITWQSKDGSKKTTAKCGMNLMRVAHKHGIDLEG
ACEGVCACSTCHIILDGEVFDELPEASEDEEDMLDLAFGLTETSRLGCQV
IVTPEMDGIVVS
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mRNA from alignment at H-canaliculatus_M_contigs7506:2172..3388-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7506.2.2 ID=mRNA_H-canaliculatus_M_contigs7506.2.2|Name=mRNA_H-canaliculatus_M_contigs7506.2.2|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1217bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7506:2172..3388- (Hapterophycus canaliculatus Oshoro7m male)
CCCGTTCCTACCACCAACCCTGTTCGATTGTGTAACTACACCAGCGTGGA GATCACGTGGCAGAGCAAGGACGGTTCGAAGAAAACCACAGCCAAGTGCG GAATGAACCTCATGCGGGTGGCACACAAACATGGAATCGATTTGGAAGGT TCGTAACTACTGTGAGATGCCTAGTCCTTCGGGTTGGTCGTCCTTCGGGC TGGCGTCATGGAATCTGCTGCGATTGTCAGGCTGATGCGTGTGGGTTAGA CTTGACCCCACCTCGTTTTGTGTAAAGTTGTAGAGTGGATTGATTGATGT GCCCCGATTGAGCTGAATTTGAACGAGGTGGCCAGATTTGACATTTACGG ATGTGATGCCTTATCACCGCGCGCATACCCGAGGACCACGCGCGATTATT TTGGCGTACCCGTCACACAGTCGCATCAAACATGATGGGCACGATTTCCT CGTTCGCTCACTCACGTATCAGGTTTGAGGGCAAATTCAATTTCTGAAGA TGATCGCCCTGCAACATGCAACTCAGGGGGAAGGGATGTTGGAGGGTTGC ATTTCTCGCAGCTATCATAGGGTTCGGTGAGGACGACCATGACCAAAAAC TCCGAAGGACAGGAGGCTTTCGATTCGTTTCGCCCTCCTCGTGGCTGTGT CGAAGGGCAACATCCAATTACGGGAAGAAAACCAATTTGTTTGCATGATG GCCGTCTTCGTCCATCAATTCGCAGGTGCCTGCGAGGGCGTTTGCGCCTG CTCGACGTGCCACATCATCCTGGATGGGGAGGTGTTCGACGAGCTCCCCG AGGCCAGCGAGGACGAGGAGGATATGCTCGACCTAGCCTTCGGTCTGACC GAAACGTCAGTTTGCGCTCTTTGGCCTGTATGTGTGCTCCTCTTTACCCT TATCTCTCGCGGGCTGGGATATCAAGGTCAACAGTCAGGTCTCATTTGCA CAGGAATGGACAGCAAGCAAGCTTTGTGCTCATGATGTTGTCGAACTCAC CAAGGCAACACATTTGTCTATTGATGTAGTTAGTGGCTTCCGTTCATCGC ATCGTGTCTATCTCTTGTCTTTTTTTGTGGCGCGCGCCTTGAGAGCGTGG GCGGCATCCTAAGACCAGTCCTCTGCTCTCGCCCTCGCCCTATCCCCAAA CATCTTCAGGTCGCGGCTCGGCTGCCAAGTCATCGTCACGCCAGAAATGG ACGGCATAGTGGTGAGT
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7506:2172..3388-

>mRNA_H-canaliculatus_M_contigs7506.2.2 ID=mRNA_H-canaliculatus_M_contigs7506.2.2|Name=mRNA_H-canaliculatus_M_contigs7506.2.2|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=336bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7506:2172..3388- (Hapterophycus canaliculatus Oshoro7m male)
CCCGTTCCTACCACCAACCCTGTTCGATTGTGTAACTACACCAGCGTGGA
GATCACGTGGCAGAGCAAGGACGGTTCGAAGAAAACCACAGCCAAGTGCG
GAATGAACCTCATGCGGGTGGCACACAAACATGGAATCGATTTGGAAGGT
GCCTGCGAGGGCGTTTGCGCCTGCTCGACGTGCCACATCATCCTGGATGG
GGAGGTGTTCGACGAGCTCCCCGAGGCCAGCGAGGACGAGGAGGATATGC
TCGACCTAGCCTTCGGTCTGACCGAAACGTCGCGGCTCGGCTGCCAAGTC
ATCGTCACGCCAGAAATGGACGGCATAGTGGTGAGT
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