mRNA_H-canaliculatus_M_contigs7506.2.2 (mRNA) Hapterophycus canaliculatus Oshoro7m male
|
Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7506.2.2 vs.
Match: 2Fe-2S (ferredoxin-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDL2_ECTSI) HSP 1 Score: 186 bits (471), Expect = 8.070e-58 Identity = 87/97 (89.69%), Postives = 94/97 (96.91%), Query Frame = 1
Query: 43 SVEITWQSKDGSKKTTAKCGMNLMRVAHKHGIDLEGACEGVCACSTCHIILDGEVFDELPEASEDEEDMLDLAFGLTETSRLGCQVIVTPEMDGIVV 333
+V+ITW++KDG KKTTAKCGMNLMRVAHKHGIDLEGACEGVCACSTCH+I+ EVFD+LPEASEDEEDMLDLAFGLTETSRLGCQVIVTPEMDGIVV
Sbjct: 84 TVQITWENKDGLKKTTAKCGMNLMRVAHKHGIDLEGACEGVCACSTCHVIMSNEVFDQLPEASEDEEDMLDLAFGLTETSRLGCQVIVTPEMDGIVV 180
BLAST of mRNA_H-canaliculatus_M_contigs7506.2.2 vs.
Match: 2Fe-2S (ferredoxin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C6V2_9STRA) HSP 1 Score: 147 bits (371), Expect = 7.830e-43 Identity = 71/104 (68.27%), Postives = 83/104 (79.81%), Query Frame = 1
Query: 28 LCNYTSVEITWQSKDGSKKTT-AKCGMNLMRVAHKHGIDLEGACEGVCACSTCHIILDGEVFDELPEASEDEEDMLDLAFGLTETSRLGCQVIVTPEMDGIVVS 336
N +V I W++K G +T A GMNLMRVAHKH I+LEGACEGVCACSTCH+IL+ +++ LPE SEDEEDMLD AFGLT TSRLGCQV+VTPEMDGI V+
Sbjct: 63 FANAPNVTINWRNKHGEVRTVDAPVGMNLMRVAHKHDIELEGACEGVCACSTCHVILEDDIYAALPEPSEDEEDMLDQAFGLTATSRLGCQVVVTPEMDGITVT 166
BLAST of mRNA_H-canaliculatus_M_contigs7506.2.2 vs.
Match: 2Fe-2S (ferredoxin n=1 Tax=Alphaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_44_7 TaxID=1973901 RepID=A0A2H0QFZ7_9PROT) HSP 1 Score: 129 bits (323), Expect = 1.670e-36 Identity = 62/95 (65.26%), Postives = 78/95 (82.11%), Query Frame = 1
Query: 52 ITWQSKDGSKKTT-AKCGMNLMRVAHKHGIDLEGACEGVCACSTCHIILDGEVFDELPEASEDEEDMLDLAFGLTETSRLGCQVIVTPEMDGIVV 333
+ ++ KDGS K+ A G++++ VAHK+ IDLEGACEG ACSTCH+I++ E FD LPEASEDEEDMLDLAFGLT TSRLGCQ+I++ E+DGI V
Sbjct: 4 VNFRLKDGSVKSIDAPVGLSILEVAHKNDIDLEGACEGSLACSTCHVIVEEEFFDRLPEASEDEEDMLDLAFGLTHTSRLGCQIIISEELDGITV 98
BLAST of mRNA_H-canaliculatus_M_contigs7506.2.2 vs.
Match: Hypothetical (protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3SGD3_9STRA) HSP 1 Score: 130 bits (328), Expect = 1.820e-36 Identity = 61/87 (70.11%), Postives = 74/87 (85.06%), Query Frame = 1
Query: 76 SKKTTAKCGMNLMRVAHKHGIDLEGACEGVCACSTCHIILDGEVFDELPEASEDEEDMLDLAFGLTETSRLGCQVIVTPEMDGIVVS 336
+K A+ G +L++ AH+H IDLEGACEGVCACSTCH+IL +VFD LPEASEDEEDMLD+AFGL+ TSRLGCQVIVT EM+G+ V+
Sbjct: 68 TKTVKARVGESLLQTAHRHHIDLEGACEGVCACSTCHVILSDDVFDSLPEASEDEEDMLDMAFGLSATSRLGCQVIVTDEMEGMEVN 154
BLAST of mRNA_H-canaliculatus_M_contigs7506.2.2 vs.
Match: Ferredoxin, (2Fe-2S n=1 Tax=Caenispirillum bisanense TaxID=414052 RepID=A0A286GLE3_9PROT) HSP 1 Score: 127 bits (320), Expect = 4.770e-36 Identity = 60/96 (62.50%), Postives = 81/96 (84.38%), Query Frame = 1
Query: 49 EITWQSKDGSKKT-TAKCGMNLMRVAHKHGIDLEGACEGVCACSTCHIILDGEVFDELPEASEDEEDMLDLAFGLTETSRLGCQVIVTPEMDGIVV 333
+IT+ KDG +T A G++++ VAH+H IDLEGACEG ACSTCH+++D + +++LPEASEDEEDMLDLAFGLT+TSRLGCQ+I+T ++DG+VV
Sbjct: 3 KITFIDKDGEAQTYDAPEGLSVLEVAHRHSIDLEGACEGSLACSTCHVVVDPDWYEKLPEASEDEEDMLDLAFGLTKTSRLGCQIIMTDDLDGLVV 98
BLAST of mRNA_H-canaliculatus_M_contigs7506.2.2 vs.
Match: 2Fe-2S (ferredoxin n=1 Tax=Alphaproteobacteria bacterium 33-17 TaxID=1895704 RepID=A0A1Q3PDA0_9PROT) HSP 1 Score: 125 bits (314), Expect = 3.790e-35 Identity = 60/98 (61.22%), Postives = 78/98 (79.59%), Query Frame = 1
Query: 43 SVEITWQSKDGSKKTT-AKCGMNLMRVAHKHGIDLEGACEGVCACSTCHIILDGEVFDELPEASEDEEDMLDLAFGLTETSRLGCQVIVTPEMDGIVV 333
++++ + DG+ KT A G++L+ VAH + IDLEGACEG ACSTCH+++D E FD+LPEASEDEEDMLDLAFGLT TSRLGCQ+I+T +DG+ V
Sbjct: 3 TIKVNFLETDGTVKTVEAPLGVSLLEVAHSNDIDLEGACEGSLACSTCHVVVDEEWFDKLPEASEDEEDMLDLAFGLTHTSRLGCQIIMTEGLDGLTV 100
BLAST of mRNA_H-canaliculatus_M_contigs7506.2.2 vs.
Match: 2Fe-2S (ferredoxin n=2 Tax=Acidiphilium TaxID=522 RepID=A0A257UWR7_9PROT) HSP 1 Score: 125 bits (314), Expect = 3.900e-35 Identity = 56/90 (62.22%), Postives = 77/90 (85.56%), Query Frame = 1
Query: 67 KDGSKKTT-AKCGMNLMRVAHKHGIDLEGACEGVCACSTCHIILDGEVFDELPEASEDEEDMLDLAFGLTETSRLGCQVIVTPEMDGIVV 333
+DGS++T A G++++ VAHKHG+D+EGACEG ACSTCH+I+D + +D L +ASEDEEDMLDLAFGL +TSRLGCQ++++P +DG+VV
Sbjct: 9 RDGSRRTVDAPVGLSVLEVAHKHGVDIEGACEGSLACSTCHVIVDPDWYDRLGKASEDEEDMLDLAFGLEKTSRLGCQIVMSPSLDGLVV 98
BLAST of mRNA_H-canaliculatus_M_contigs7506.2.2 vs.
Match: ferredoxin (family 2Fe-2S iron-sulfur cluster binding protein n=1 Tax=Azospirillum oleiclasticum TaxID=2735135 RepID=UPI0015D50714) HSP 1 Score: 125 bits (313), Expect = 5.540e-35 Identity = 59/96 (61.46%), Postives = 79/96 (82.29%), Query Frame = 1
Query: 49 EITWQSKDGSK-KTTAKCGMNLMRVAHKHGIDLEGACEGVCACSTCHIILDGEVFDELPEASEDEEDMLDLAFGLTETSRLGCQVIVTPEMDGIVV 333
++T+ DG++ + A G++++ VAHKHG DLEGACEG ACSTCH+I++ E +D LP+A+EDEEDMLDLAFGLT+TSRLGCQ+IVT E+DG+ V
Sbjct: 3 KMTFIQTDGTRNEVDAPLGLSVLEVAHKHGYDLEGACEGSLACSTCHVIVEPEWYDLLPDATEDEEDMLDLAFGLTKTSRLGCQIIVTEELDGLTV 98
BLAST of mRNA_H-canaliculatus_M_contigs7506.2.2 vs.
Match: 2Fe-2S (iron-sulfur cluster binding domain-containing protein n=2 Tax=Azospirillum TaxID=191 RepID=A0A433JC60_9PROT) HSP 1 Score: 124 bits (312), Expect = 7.630e-35 Identity = 56/96 (58.33%), Postives = 80/96 (83.33%), Query Frame = 1
Query: 49 EITWQSKDGSKKTT-AKCGMNLMRVAHKHGIDLEGACEGVCACSTCHIILDGEVFDELPEASEDEEDMLDLAFGLTETSRLGCQVIVTPEMDGIVV 333
++T+ DG+++ A G++++ +AHKH +DLEGACEG ACSTCH++++ E +D LP+A+EDEEDMLDLAFGLT+TSRLGCQ+I+T E+DG+VV
Sbjct: 3 KMTFIETDGNRREVEAPLGLSVLEIAHKHSLDLEGACEGSLACSTCHVVIEPEWYDVLPDAAEDEEDMLDLAFGLTKTSRLGCQIIMTEELDGLVV 98
BLAST of mRNA_H-canaliculatus_M_contigs7506.2.2 vs.
Match: Ferredoxin, (2Fe-2S n=1 Tax=Caenispirillum salinarum AK4 TaxID=1238182 RepID=K9H692_9PROT) HSP 1 Score: 124 bits (310), Expect = 1.540e-34 Identity = 58/96 (60.42%), Postives = 79/96 (82.29%), Query Frame = 1
Query: 49 EITWQSKDGSKKT-TAKCGMNLMRVAHKHGIDLEGACEGVCACSTCHIILDGEVFDELPEASEDEEDMLDLAFGLTETSRLGCQVIVTPEMDGIVV 333
+IT+ +DG +T A G++++ VAH+HGID+EGACEG ACSTCH++++ E FD+L EASEDEEDMLDLAFGLT+TSRLGCQ+I+ ++DG+ V
Sbjct: 3 KITFIDRDGEAQTFDAPEGLSVLEVAHRHGIDIEGACEGSLACSTCHVVVEPEWFDKLSEASEDEEDMLDLAFGLTKTSRLGCQIILNDDLDGLTV 98 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7506.2.2 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs7506.2.2 >prot_H-canaliculatus_M_contigs7506.2.2 ID=prot_H-canaliculatus_M_contigs7506.2.2|Name=mRNA_H-canaliculatus_M_contigs7506.2.2|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=112bp PVPTTNPVRLCNYTSVEITWQSKDGSKKTTAKCGMNLMRVAHKHGIDLEGback to top mRNA from alignment at H-canaliculatus_M_contigs7506:2172..3388- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs7506.2.2 ID=mRNA_H-canaliculatus_M_contigs7506.2.2|Name=mRNA_H-canaliculatus_M_contigs7506.2.2|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1217bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7506:2172..3388- (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7506:2172..3388- >mRNA_H-canaliculatus_M_contigs7506.2.2 ID=mRNA_H-canaliculatus_M_contigs7506.2.2|Name=mRNA_H-canaliculatus_M_contigs7506.2.2|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=336bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7506:2172..3388- (Hapterophycus canaliculatus Oshoro7m male)back to top |