mRNA_H-canaliculatus_M_contigs75054.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75054.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75054.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs75054.1.1 vs.
Match: Peptidase (M12A domain-containing protein n=1 Tax=Chromatiales bacterium (ex Bugula neritina AB1) TaxID=1868282 RepID=A0A1E5A0V7_9GAMM)

HSP 1 Score: 58.9 bits (141), Expect = 2.800e-7
Identity = 41/148 (27.70%), Postives = 74/148 (50.00%), Query Frame = 1 
Query:    1 PIGGSTRSIGQRTAPSDGDLQAIAELYGSDLSVATRVA----TAGQGTELDIYVSNLSMRGAHDVSLDIGITPDPDVMASLPATWKCESNQ-DRNLSCHLSRLLASATELLTLRLPEQQELSS---IDVSLSSKTPDLDLSNNSSSVL 420
            PI  +T +IGQR + S GD Q++  LY SDLS+ +       + G   E++++V+N S  GA+ + + + +     +++   A W C       N+ C+   L+  A     + +      +     D +L+S+TPD D+S+N  S +
Sbjct:  242 PIQATTETIGQRISTSAGDKQSVINLYKSDLSLVSNTVEQPVSVGSPIEVNLHVTNNSTVGANSLQVVMPVPASSLLLSYSAAEWSCSQRGIGANIVCNSPVLVGGADTSFGITVSTDSTSTGHLFFDSTLTSRTPDTDMSDNHDSAV 389
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BLAST of mRNA_H-canaliculatus_M_contigs75054.1.1 vs.
Match: Peptidase (M12A domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2G6ELM5_9GAMM)

HSP 1 Score: 52.8 bits (125), Expect = 3.980e-5
Identity = 40/138 (28.99%), Postives = 71/138 (51.45%), Query Frame = 1 
Query:   10 GSTRSIGQRTAPSDGDLQAIAELYGSDLSVATRVAT-AGQGTELDIYVSNLSMRGAHDVSLDIGITPDPDVMASLP--ATWKCESNQDRNLSCHLSRLLA-SATELLTLRLPEQQELSSIDVSLSSKTPDLDLSNNSS 411
            G    +GQR A SD D +++  +Y +DL++A    T    G E+ + V N    GA+ + L + I P+ +   ++   A W C ++ +  L+C     +    ++ L L    +  L  +D++++S+T DLD SNN S
Sbjct:  323 GIDAQVGQRIALSDMDAESVDRMYATDLALAPPSGTPTDDGLEITVTVENRGSFGANTLKLSL-ILPEGNSWRAISENAGWDCRTSAE-TLNCERDSFVEHQISQFLVLADAPESALDELDMTITSRTMDLDDSNNRS 458
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75054.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Peptidase2.800e-727.70M12A domain-containing protein n=1 Tax=Chromatiale... [more]
Peptidase3.980e-528.99M12A domain-containing protein n=1 Tax=Gammaproteo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75054contigH-canaliculatus_M_contigs75054:85..543 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Model size459
Hectar predicted targeting categoryother localisation
Exons1
Cds size459
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854088.3759675-CDS-H-canaliculatus_M_contigs75054:84..5431696854088.3759675-CDS-H-canaliculatus_M_contigs75054:84..543Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75054 85..543 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75054.1.1prot_H-canaliculatus_M_contigs75054.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75054 85..543 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75054.1.1

>prot_H-canaliculatus_M_contigs75054.1.1 ID=prot_H-canaliculatus_M_contigs75054.1.1|Name=mRNA_H-canaliculatus_M_contigs75054.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=153bp
PIGGSTRSIGQRTAPSDGDLQAIAELYGSDLSVATRVATAGQGTELDIYV
SNLSMRGAHDVSLDIGITPDPDVMASLPATWKCESNQDRNLSCHLSRLLA
SATELLTLRLPEQQELSSIDVSLSSKTPDLDLSNNSSSVLSDEVGELPEQ
RPV
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mRNA from alignment at H-canaliculatus_M_contigs75054:85..543-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75054.1.1 ID=mRNA_H-canaliculatus_M_contigs75054.1.1|Name=mRNA_H-canaliculatus_M_contigs75054.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=459bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75054:85..543- (Hapterophycus canaliculatus Oshoro7m male)
CCCATTGGTGGCTCAACCCGTAGTATTGGACAACGCACTGCACCGAGTGA
CGGTGACTTACAGGCGATTGCCGAGCTTTATGGTAGTGACCTGTCCGTGG
CTACGCGTGTCGCTACAGCTGGCCAAGGCACCGAGCTTGATATTTACGTG
AGCAATTTATCAATGCGCGGGGCGCATGATGTCAGCCTGGATATTGGCAT
AACACCCGATCCAGATGTTATGGCCTCGTTGCCAGCTACCTGGAAGTGCG
AATCGAATCAGGATCGGAACTTGTCGTGCCACCTCTCGCGTTTGCTCGCA
AGCGCAACAGAGCTTCTTACTCTTCGCTTACCAGAACAGCAGGAACTGTC
GTCCATTGATGTATCGTTGTCATCCAAGACACCAGATCTTGACCTGTCTA
ATAACAGCAGCAGTGTGCTGAGTGATGAGGTTGGGGAGCTACCAGAGCAA
AGGCCAGTT
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75054:85..543-

>mRNA_H-canaliculatus_M_contigs75054.1.1 ID=mRNA_H-canaliculatus_M_contigs75054.1.1|Name=mRNA_H-canaliculatus_M_contigs75054.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=459bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75054:85..543- (Hapterophycus canaliculatus Oshoro7m male)
CCCATTGGTGGCTCAACCCGTAGTATTGGACAACGCACTGCACCGAGTGA
CGGTGACTTACAGGCGATTGCCGAGCTTTATGGTAGTGACCTGTCCGTGG
CTACGCGTGTCGCTACAGCTGGCCAAGGCACCGAGCTTGATATTTACGTG
AGCAATTTATCAATGCGCGGGGCGCATGATGTCAGCCTGGATATTGGCAT
AACACCCGATCCAGATGTTATGGCCTCGTTGCCAGCTACCTGGAAGTGCG
AATCGAATCAGGATCGGAACTTGTCGTGCCACCTCTCGCGTTTGCTCGCA
AGCGCAACAGAGCTTCTTACTCTTCGCTTACCAGAACAGCAGGAACTGTC
GTCCATTGATGTATCGTTGTCATCCAAGACACCAGATCTTGACCTGTCTA
ATAACAGCAGCAGTGTGCTGAGTGATGAGGTTGGGGAGCTACCAGAGCAA
AGGCCAGTT
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