mRNA_H-canaliculatus_M_contigs75037.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75037.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75037.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs75037.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L860_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.310e-19
Identity = 43/54 (79.63%), Postives = 46/54 (85.19%), Query Frame = 1 
Query:    4 LKKKIEGVEGKLLSDPYKNIEEKHRRKMIEHRTTEMAVTDLDKYWTALDKVCIR 165
            LK +I G E KL SD Y+NIEEKHRRKMIEHRTTEMAVTDLDKYWTALDK  +R
Sbjct:  164 LKGQIRGYEAKLNSDTYRNIEEKHRRKMIEHRTTEMAVTDLDKYWTALDKALLR 217
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BLAST of mRNA_H-canaliculatus_M_contigs75037.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQL8_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 7.280e-19
Identity = 43/54 (79.63%), Postives = 46/54 (85.19%), Query Frame = 1 
Query:    4 LKKKIEGVEGKLLSDPYKNIEEKHRRKMIEHRTTEMAVTDLDKYWTALDKVCIR 165
            LK +I G E KL SD Y+NIEEKHRRKMIEHRTTEMAVTDLDKYWTALDK  +R
Sbjct:  213 LKGQIRGYEAKLNSDTYRNIEEKHRRKMIEHRTTEMAVTDLDKYWTALDKALLR 266
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BLAST of mRNA_H-canaliculatus_M_contigs75037.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W3X1_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 6.910e-9
Identity = 28/53 (52.83%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:    7 KKKIEGVEGKLLSDPYKNIEEKHRRKMIEHRTTEMAVTDLDKYWTALDKVCIR 165
            K++I  ++ KL ++ YK+I+E+HRRKMIE+ TT +AV DL+KY +ALDK  +R
Sbjct:  292 KEQIRSLKRKLKTEEYKDIDERHRRKMIEYETTTIAVEDLEKYHSALDKALLR 344
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BLAST of mRNA_H-canaliculatus_M_contigs75037.1.1 vs.
Match: Hypothetical (protein n=6 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2L7D4_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 3.330e-8
Identity = 28/48 (58.33%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:   22 GVEGKLLSDPYKNIEEKHRRKMIEHRTTEMAVTDLDKYWTALDKVCIR 165
             ++ KLL+  YK+I+E+HR KMIE+ TT +AVTDLDKY  ALDK  +R
Sbjct: 1183 NLKRKLLTPEYKDIDERHRVKMIEYETTMIAVTDLDKYHNALDKALLR 1230
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BLAST of mRNA_H-canaliculatus_M_contigs75037.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K6V4_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 6.210e-8
Identity = 28/53 (52.83%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    7 KKKIEGVEGKLLSDPYKNIEEKHRRKMIEHRTTEMAVTDLDKYWTALDKVCIR 165
            K +I  ++ KL +  YK+++E+HRRKMIE  TT +AV DL+KY TALDK  +R
Sbjct:  606 KDQIRSLKRKLQTPEYKDVDERHRRKMIEFETTLIAVKDLEKYHTALDKALLR 658
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BLAST of mRNA_H-canaliculatus_M_contigs75037.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D101_CYCTE)

HSP 1 Score: 54.7 bits (130), Expect = 6.950e-8
Identity = 26/50 (52.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:   16 IEGVEGKLLSDPYKNIEEKHRRKMIEHRTTEMAVTDLDKYWTALDKVCIR 165
            I  ++ KL +  YKNI+E+HR  MI + TT++AV+DLDKY  ALDK  +R
Sbjct:   44 IRALKRKLTTPEYKNIDERHREAMIMYETTQIAVSDLDKYRAALDKALLR 93
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BLAST of mRNA_H-canaliculatus_M_contigs75037.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P0S2_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 7.610e-7
Identity = 26/54 (48.15%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:    4 LKKKIEGVEGKLLSDPYKNIEEKHRRKMIEHRTTEMAVTDLDKYWTALDKVCIR 165
            L++    ++ KL ++ YK+I+E+HR +MIEH TT +AV+DL+KY  ALDK  +R
Sbjct:  642 LRETTRQLKRKLNTEEYKDIDERHRVRMIEHETTVIAVSDLEKYHRALDKALLR 695
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BLAST of mRNA_H-canaliculatus_M_contigs75037.1.1 vs.
Match: DNA (repair protein RAD50 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A670A)

HSP 1 Score: 53.1 bits (126), Expect = 1.040e-6
Identity = 24/50 (48.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:   16 IEGVEGKLLSDPYKNIEEKHRRKMIEHRTTEMAVTDLDKYWTALDKVCIR 165
            I+  + +L S+ Y+N E+KHR K+IE +TT+MA  DLDKY+ ALD+  ++
Sbjct: 1090 IKRFQSELRSNQYRNAEDKHREKVIEMKTTQMASVDLDKYYKALDRAIMK 1139
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BLAST of mRNA_H-canaliculatus_M_contigs75037.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CBI4_PYTOL)

HSP 1 Score: 53.1 bits (126), Expect = 1.040e-6
Identity = 27/50 (54.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:    4 LKKKIEGVEGKLLSDPYKNIEEKHRRKMIEHRTTEMAVTDLDKYWTALDK 153
            L+ +I   + KL S  Y+N+EEKHR+K+I+  TT MAV DLDKY+ ALD+
Sbjct: 1109 LEYQIRDEKIKLKSADYRNVEEKHRQKLIQFETTTMAVADLDKYFKALDQ 1158
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BLAST of mRNA_H-canaliculatus_M_contigs75037.1.1 vs.
Match: AAA_23 (domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CAM3_THAPS)

HSP 1 Score: 53.1 bits (126), Expect = 1.050e-6
Identity = 26/55 (47.27%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:    1 LLKKKIEGVEGKLLSDPYKNIEEKHRRKMIEHRTTEMAVTDLDKYWTALDKVCIR 165
            +L ++   ++ KL    YK++EE+HR KMIE+ TT + V DLDKY+ ALDK  +R
Sbjct: 1168 MLAEQRRALKRKLNEPEYKDVEERHRVKMIEYETTNIVVGDLDKYYDALDKALLR 1222
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75037.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
Uncharacterized1.310e-1979.63protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized7.280e-1979.63protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Hypothetical6.910e-952.83protein n=1 Tax=Pseudictyota dubia TaxID=2749911 R... [more]
Hypothetical3.330e-858.33protein n=6 Tax=Ditylum brightwellii TaxID=49249 R... [more]
Hypothetical6.210e-852.83protein n=1 Tax=Odontella aurita TaxID=265563 RepI... [more]
Hypothetical6.950e-852.00protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID... [more]
Hypothetical7.610e-748.15protein n=1 Tax=Leptocylindrus danicus TaxID=16351... [more]
DNA1.040e-648.00repair protein RAD50 n=1 Tax=Exaiptasia diaphana T... [more]
Uncharacterized1.040e-654.00protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]
AAA_231.050e-647.27domain-containing protein n=1 Tax=Thalassiosira ps... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75037contigH-canaliculatus_M_contigs75037:205..369 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FQL8
Preferred nameRAD50
PFAMsAAA_23,Rad50_zn_hook,SbcCD_C
Model size165
Max annot lvl2759|Eukaryota
KEGG koko:K10866
KEGG Pathwayko03440,ko03450,ko04218,map03440,map03450,map04218
KEGG ModuleM00291,M00292,M00295
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000018,GO:0000019,GO:0000075,GO:0000077,GO:0000166,GO:0000228,GO:0000278,GO:0000280,GO:0000706,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000726,GO:0000727,GO:0000729,GO:0000781,GO:0000784,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003690,GO:0003691,GO:0003697,GO:0003824,GO:0004003,GO:0004017,GO:0004386,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006278,GO:0006281,GO:0006284,GO:0006302,GO:0006303,GO:0006310,GO:0006312,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007004,GO:0007049,GO:0007093,GO:0007127,GO:0007131,GO:0007154,GO:0007165,GO:0007346,GO:0008026,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009117,GO:0009123,GO:0009165,GO:0009892,GO:0009987,GO:0010520,GO:0010564,GO:0010605,GO:0010705,GO:0010833,GO:0016043,GO:0016233,GO:0016301,GO:0016310,GO:0016462,GO:0016740,GO:0016772,GO:0016776,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019205,GO:0019219,GO:0019222,GO:0019438,GO:0019637,GO:0022402,GO:0022414,GO:0023052,GO:0030554,GO:0030674,GO:0030870,GO:0031297,GO:0031323,GO:0031324,GO:0031570,GO:0031573,GO:0031974,GO:0031981,GO:0032069,GO:0032070,GO:0032071,GO:0032074,GO:0032076,GO:0032078,GO:0032200,GO:0032392,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033043,GO:0033260,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035556,GO:0035639,GO:0035753,GO:0035825,GO:0035861,GO:0036094,GO:0040020,GO:0042138,GO:0042162,GO:0042592,GO:0042623,GO:0042769,GO:0042770,GO:0043047,GO:0043086,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043570,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044773,GO:0044774,GO:0044786,GO:0045005,GO:0045786,GO:0045930,GO:0045934,GO:0046483,GO:0046940,GO:0048285,GO:0048519,GO:0048523,GO:0050145,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051128,GO:0051171,GO:0051172,GO:0051276,GO:0051321,GO:0051336,GO:0051346,GO:0051445,GO:0051606,GO:0051716,GO:0051726,GO:0051783,GO:0051880,GO:0055086,GO:0060090,GO:0060249,GO:0060255,GO:0060631,GO:0061982,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070192,GO:0071103,GO:0071704,GO:0071840,GO:0071897,GO:0072395,GO:0072401,GO:0072422,GO:0080090,GO:0090304,GO:0090305,GO:0090407,GO:0090734,GO:0097159,GO:0097367,GO:0097551,GO:0097552,GO:0098687,GO:0098847,GO:0110025,GO:0140013,GO:0140097,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902298,GO:1902969,GO:1903046,GO:1903047,GO:1903211,GO:1990426,GO:1990505,GO:1990898,GO:1990918,GO:2000241
Exons1
Evalue1.19e-19
EggNOG OGsCOG0419@1|root,KOG0962@2759|Eukaryota
DescriptionG-quadruplex DNA binding
Cds size165
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854088.109854-CDS-H-canaliculatus_M_contigs75037:204..3691696854088.109854-CDS-H-canaliculatus_M_contigs75037:204..369Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75037 205..369 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75037.1.1prot_H-canaliculatus_M_contigs75037.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75037 205..369 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75037.1.1

>prot_H-canaliculatus_M_contigs75037.1.1 ID=prot_H-canaliculatus_M_contigs75037.1.1|Name=mRNA_H-canaliculatus_M_contigs75037.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=55bp
LLKKKIEGVEGKLLSDPYKNIEEKHRRKMIEHRTTEMAVTDLDKYWTALD
KVCIR
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mRNA from alignment at H-canaliculatus_M_contigs75037:205..369-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75037.1.1 ID=mRNA_H-canaliculatus_M_contigs75037.1.1|Name=mRNA_H-canaliculatus_M_contigs75037.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=165bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75037:205..369- (Hapterophycus canaliculatus Oshoro7m male)
CTCCTCAAAAAAAAGATTGAGGGGGTCGAGGGGAAGCTGCTGTCAGACCC
GTACAAAAACATCGAGGAGAAACATCGGCGGAAGATGATAGAGCACCGCA
CCACGGAGATGGCTGTCACTGACCTCGACAAGTACTGGACAGCGCTCGAC
AAGGTGTGCATTCGC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75037:205..369-

>mRNA_H-canaliculatus_M_contigs75037.1.1 ID=mRNA_H-canaliculatus_M_contigs75037.1.1|Name=mRNA_H-canaliculatus_M_contigs75037.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=165bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75037:205..369- (Hapterophycus canaliculatus Oshoro7m male)
CTCCTCAAAAAAAAGATTGAGGGGGTCGAGGGGAAGCTGCTGTCAGACCC
GTACAAAAACATCGAGGAGAAACATCGGCGGAAGATGATAGAGCACCGCA
CCACGGAGATGGCTGTCACTGACCTCGACAAGTACTGGACAGCGCTCGAC
AAGGTGTGCATTCGC
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