mRNA_H-canaliculatus_M_contigs75012.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
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Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs75012.1.1 vs.
Match: DNA (helicase n=14 Tax=Corynebacterium TaxID=1716 RepID=W5XVF5_9CORY) HSP 1 Score: 368 bits (944), Expect = 7.970e-122 Identity = 180/181 (99.45%), Postives = 180/181 (99.45%), Query Frame = 1
Query: 1 RTFHAAALRQLKYFWPQVAGDLPWRLVDNKFPIVSRAVRNVGMDPTKETVRDILSEIEWAKSSLISADGYVDALKAHDRIAPKDPQKVAKVYHRYEEFKSQPDGMLLDFDDLLIHVAGALENAPAVAEEFRQQYRTFVVDEYQDVTPLQQRVLNAWLGERDDLTVVGDANQTIYSFTGASP 543
RTFHAAALRQLKYFWPQVAGDLPWRLVDNKFPIVSRAVRNVGMDPTKETVRDILSEIEWAKSSLISADGYVDALKAHDRIAPKDPQKVAKVY RYEEFKSQPDGMLLDFDDLLIHVAGALENAPAVAEEFRQQYRTFVVDEYQDVTPLQQRVLNAWLGERDDLTVVGDANQTIYSFTGASP
Sbjct: 86 RTFHAAALRQLKYFWPQVAGDLPWRLVDNKFPIVSRAVRNVGMDPTKETVRDILSEIEWAKSSLISADGYVDALKAHDRIAPKDPQKVAKVYQRYEEFKSQPDGMLLDFDDLLIHVAGALENAPAVAEEFRQQYRTFVVDEYQDVTPLQQRVLNAWLGERDDLTVVGDANQTIYSFTGASP 266
BLAST of mRNA_H-canaliculatus_M_contigs75012.1.1 vs.
Match: DNA (helicase n=1 Tax=Corynebacterium yudongzhengii TaxID=2080740 RepID=A0A2U1T508_9CORY) HSP 1 Score: 303 bits (776), Expect = 8.360e-97 Identity = 142/181 (78.45%), Postives = 160/181 (88.40%), Query Frame = 1
Query: 1 RTFHAAALRQLKYFWPQVAGDLPWRLVDNKFPIVSRAVRNVGMDPTKETVRDILSEIEWAKSSLISADGYVDALKAHDRIAPKDPQKVAKVYHRYEEFKSQPDGMLLDFDDLLIHVAGALENAPAVAEEFRQQYRTFVVDEYQDVTPLQQRVLNAWLGERDDLTVVGDANQTIYSFTGASP 543
RTFHAAALRQL+YFWPQVAGDLPW L+DNKFP+V RA R++G+D TKE VRD+LSEIEWAK+SLI+AD Y + + DR P DP KVA+VY RYE+ K+ +GM LDFDDLL+HVAGALENAPAVAEEFR QYR+FVVDEYQDVTPLQQRVLNAWLG+RDDLTVVGDANQTIYSFTGASP
Sbjct: 82 RTFHAAALRQLRYFWPQVAGDLPWTLIDNKFPLVGRAARSIGVDSTKENVRDLLSEIEWAKASLITADDYAEKISGTDRTPPMDPAKVAEVYRRYEQSKTSSEGMALDFDDLLLHVAGALENAPAVAEEFRSQYRSFVVDEYQDVTPLQQRVLNAWLGDRDDLTVVGDANQTIYSFTGASP 262
BLAST of mRNA_H-canaliculatus_M_contigs75012.1.1 vs.
Match: DNA (helicase n=1 Tax=Corynebacterium tapiri TaxID=1448266 RepID=A0A5C4U615_9CORY) HSP 1 Score: 302 bits (774), Expect = 1.660e-96 Identity = 141/181 (77.90%), Postives = 161/181 (88.95%), Query Frame = 1
Query: 1 RTFHAAALRQLKYFWPQVAGDLPWRLVDNKFPIVSRAVRNVGMDPTKETVRDILSEIEWAKSSLISADGYVDALKAHDRIAPKDPQKVAKVYHRYEEFKSQPDGMLLDFDDLLIHVAGALENAPAVAEEFRQQYRTFVVDEYQDVTPLQQRVLNAWLGERDDLTVVGDANQTIYSFTGASP 543
RTFHAAALRQL+YFWPQVAGDLPWRL+DNKFP+V RA R+VG+ TK++VRD+L EIEWAK+SLI+ADGY ++ H R P D KVA+VY RYE+ K+ P+GMLLDFDDLL+HVAGALENAP VAEEFRQQYR+FVVDEYQD+TPLQQRVL AWLGERDDLTVVGDANQTIYSFTGA+P
Sbjct: 82 RTFHAAALRQLRYFWPQVAGDLPWRLIDNKFPLVGRAARSVGLPTTKDSVRDLLGEIEWAKASLITADGYAGSVDKHRRTPPADAAKVAEVYRRYEQAKTTPEGMLLDFDDLLLHVAGALENAPGVAEEFRQQYRSFVVDEYQDITPLQQRVLEAWLGERDDLTVVGDANQTIYSFTGATP 262
BLAST of mRNA_H-canaliculatus_M_contigs75012.1.1 vs.
Match: UvrD-helicase (domain-containing protein n=1 Tax=Corynebacterium massiliense TaxID=441501 RepID=UPI0003B568B3) HSP 1 Score: 300 bits (767), Expect = 2.310e-95 Identity = 141/181 (77.90%), Postives = 159/181 (87.85%), Query Frame = 1
Query: 1 RTFHAAALRQLKYFWPQVAGDLPWRLVDNKFPIVSRAVRNVGMDPTKETVRDILSEIEWAKSSLISADGYVDALKAHDRIAPKDPQKVAKVYHRYEEFKSQPDGMLLDFDDLLIHVAGALENAPAVAEEFRQQYRTFVVDEYQDVTPLQQRVLNAWLGERDDLTVVGDANQTIYSFTGASP 543
RTFHAAA RQLKYFWPQVAGDLPW+L+DNKF +V+RAVR +D TK+ +RD++ EIEWAK+SLI ADGY +A+ R AP DP+KVA+ Y RYE K+ PDGMLLDFDDLL+H+AGALENAPAVA+EFR QYRTFVVDEYQDVTPLQQRVLNAWLGERDDLTVVGDANQTIYSFTGASP
Sbjct: 89 RTFHAAARRQLKYFWPQVAGDLPWKLIDNKFSLVARAVRGAQLDSTKDLIRDVMGEIEWAKASLIGADGYPEAIAKSRREAPADPRKVAEAYRRYESSKALPDGMLLDFDDLLLHLAGALENAPAVADEFRNQYRTFVVDEYQDVTPLQQRVLNAWLGERDDLTVVGDANQTIYSFTGASP 269
BLAST of mRNA_H-canaliculatus_M_contigs75012.1.1 vs.
Match: DNA (helicase n=1 Tax=Corynebacterium tuscaniense TaxID=302449 RepID=A0A2N6T463_9CORY) HSP 1 Score: 297 bits (760), Expect = 2.020e-94 Identity = 139/181 (76.80%), Postives = 159/181 (87.85%), Query Frame = 1
Query: 1 RTFHAAALRQLKYFWPQVAGDLPWRLVDNKFPIVSRAVRNVGMDPTKETVRDILSEIEWAKSSLISADGYVDALKAHDRIAPKDPQKVAKVYHRYEEFKSQPDGMLLDFDDLLIHVAGALENAPAVAEEFRQQYRTFVVDEYQDVTPLQQRVLNAWLGERDDLTVVGDANQTIYSFTGASP 543
RTFHAAALRQL+YFWPQVAGDLPW+L+DNKFP+V+RA R+VG++P KE VRD+L+EIEWAK+SLIS DGY + + R P D +KVA VY RYEE K+ P+GM LDFDDLL+HVAGALENAPAVAEEFR QY+TFVVDEYQDVTPLQQRVL WLG+RDDLTVVGDANQTIYSFTGA+P
Sbjct: 82 RTFHAAALRQLRYFWPQVAGDLPWQLIDNKFPLVARATRSVGLEPDKELVRDLLTEIEWAKASLISPDGYAEKIAGSHREPPADVEKVAAVYKRYEESKTSPEGMALDFDDLLLHVAGALENAPAVAEEFRSQYQTFVVDEYQDVTPLQQRVLEGWLGQRDDLTVVGDANQTIYSFTGATP 262
BLAST of mRNA_H-canaliculatus_M_contigs75012.1.1 vs.
Match: ATP-dependent (DNA helicase UvrD2 n=1 Tax=unclassified Corynebacterium TaxID=2624378 RepID=UPI001D0AB5A5) HSP 1 Score: 295 bits (754), Expect = 1.580e-93 Identity = 139/181 (76.80%), Postives = 157/181 (86.74%), Query Frame = 1
Query: 1 RTFHAAALRQLKYFWPQVAGDLPWRLVDNKFPIVSRAVRNVGMDPTKETVRDILSEIEWAKSSLISADGYVDALKAHDRIAPKDPQKVAKVYHRYEEFKSQPDGMLLDFDDLLIHVAGALENAPAVAEEFRQQYRTFVVDEYQDVTPLQQRVLNAWLGERDDLTVVGDANQTIYSFTGASP 543
RTFHAAA RQL+YFWPQVAGDLPWRLVDNKFP+V RA R VG++ KE VRD+L EIEWAK+SLI+AD Y +A+ R P P++VA+VY RYE KS P+GMLLDFDDLL+H AGALEN+PAVAEEFR+QYRTF+VDEYQDVTPLQQRVL AWLG+RDDLTVVGDANQTIYSFTGASP
Sbjct: 82 RTFHAAARRQLRYFWPQVAGDLPWRLVDNKFPLVGRAARGVGLESHKEMVRDLLGEIEWAKASLITADQYAEAIAGSHRTPPARPEQVAEVYRRYEAAKSTPEGMLLDFDDLLLHTAGALENSPAVAEEFREQYRTFIVDEYQDVTPLQQRVLQAWLGQRDDLTVVGDANQTIYSFTGASP 262
BLAST of mRNA_H-canaliculatus_M_contigs75012.1.1 vs.
Match: DNA (helicase n=2 Tax=Corynebacterium TaxID=1716 RepID=A0A376CNS9_9CORY) HSP 1 Score: 295 bits (754), Expect = 1.770e-93 Identity = 137/181 (75.69%), Postives = 159/181 (87.85%), Query Frame = 1
Query: 1 RTFHAAALRQLKYFWPQVAGDLPWRLVDNKFPIVSRAVRNVGMDPTKETVRDILSEIEWAKSSLISADGYVDALKAHDRIAPKDPQKVAKVYHRYEEFKSQPDGMLLDFDDLLIHVAGALENAPAVAEEFRQQYRTFVVDEYQDVTPLQQRVLNAWLGERDDLTVVGDANQTIYSFTGASP 543
RTFHAAALRQL+YFWPQV GD+PWRL+DNKFP+V RA R+VG+D +K+ VRD+L EIEWAK++L+S DGY + + + R P D KVA+VY RYEE K+ P+GMLLDFDDLL+HVAGALEN+PAVAEEFR QYRTFVVDEYQDVTPLQQRVL AWLG+RDDLTVVGDANQTIYSFTGA+P
Sbjct: 87 RTFHAAALRQLRYFWPQVYGDMPWRLIDNKFPLVGRAARSVGLDSSKDMVRDLLGEIEWAKATLLSPDGYKERVDDYHRTPPVDAAKVAEVYSRYEESKTSPEGMLLDFDDLLVHVAGALENSPAVAEEFRNQYRTFVVDEYQDVTPLQQRVLEAWLGQRDDLTVVGDANQTIYSFTGATP 267
BLAST of mRNA_H-canaliculatus_M_contigs75012.1.1 vs.
Match: DNA (helicase n=2 Tax=Corynebacterium otitidis TaxID=29321 RepID=I7L996_9CORY) HSP 1 Score: 293 bits (749), Expect = 8.970e-93 Identity = 138/181 (76.24%), Postives = 154/181 (85.08%), Query Frame = 1
Query: 1 RTFHAAALRQLKYFWPQVAGDLPWRLVDNKFPIVSRAVRNVGMDPTKETVRDILSEIEWAKSSLISADGYVDALKAHDRIAPKDPQKVAKVYHRYEEFKSQPDGMLLDFDDLLIHVAGALENAPAVAEEFRQQYRTFVVDEYQDVTPLQQRVLNAWLGERDDLTVVGDANQTIYSFTGASP 543
RTFHAAALRQL+YFWPQVAGDLPWRL+DNKFP V+RA R G+ + + +RD+L EIEWAK+SLI ADGY + DR P DP KVA VY RYEE K+ P+GMLLDFDDLL+H AGALEN+ AVAEEF +QYRTFVVDEYQDVTPLQQRVL+AWLGERDDLTVVGDANQTIYSFTGASP
Sbjct: 82 RTFHAAALRQLRYFWPQVAGDLPWRLIDNKFPFVARAARAAGLSASTDLLRDLLGEIEWAKASLIGADGYAQKIAGLDREPPADPAKVADVYRRYEELKNTPEGMLLDFDDLLVHTAGALENSAAVAEEFHEQYRTFVVDEYQDVTPLQQRVLDAWLGERDDLTVVGDANQTIYSFTGASP 262
BLAST of mRNA_H-canaliculatus_M_contigs75012.1.1 vs.
Match: DNA (helicase n=3 Tax=Corynebacterium TaxID=1716 RepID=A0A1N7K2C1_9CORY) HSP 1 Score: 291 bits (746), Expect = 2.450e-92 Identity = 136/181 (75.14%), Postives = 156/181 (86.19%), Query Frame = 1
Query: 1 RTFHAAALRQLKYFWPQVAGDLPWRLVDNKFPIVSRAVRNVGMDPTKETVRDILSEIEWAKSSLISADGYVDALKAHDRIAPKDPQKVAKVYHRYEEFKSQPDGMLLDFDDLLIHVAGALENAPAVAEEFRQQYRTFVVDEYQDVTPLQQRVLNAWLGERDDLTVVGDANQTIYSFTGASP 543
RTFHAAALRQL+YFWPQVAGDLPW L+DNKFP+V+RA R VG++P KE VRD+LSEIEWAK+SL++ + Y A++ R P D +K A VY RYEE K+ P+GM LDFDDLL+HVAGALENAPAVAEEFR QY+TFVVDEYQDVTPLQQRVL WLG+RDDLTVVGDANQTIYSFTGA+P
Sbjct: 82 RTFHAAALRQLRYFWPQVAGDLPWTLIDNKFPLVARATRTVGLEPDKELVRDLLSEIEWAKASLVTPESYAQAIEKTHREPPADAEKAAAVYKRYEESKTSPEGMALDFDDLLLHVAGALENAPAVAEEFRNQYQTFVVDEYQDVTPLQQRVLEGWLGQRDDLTVVGDANQTIYSFTGATP 262
BLAST of mRNA_H-canaliculatus_M_contigs75012.1.1 vs.
Match: DNA (helicase n=1 Tax=Corynebacterium doosanense CAU 212 = DSM 45436 TaxID=558173 RepID=A0A097IEB6_9CORY) HSP 1 Score: 291 bits (746), Expect = 2.450e-92 Identity = 137/181 (75.69%), Postives = 159/181 (87.85%), Query Frame = 1
Query: 1 RTFHAAALRQLKYFWPQVAGDLPWRLVDNKFPIVSRAVRNVGMDPTKETVRDILSEIEWAKSSLISADGYVDALKAHDRIAPKDPQKVAKVYHRYEEFKSQPDGMLLDFDDLLIHVAGALENAPAVAEEFRQQYRTFVVDEYQDVTPLQQRVLNAWLGERDDLTVVGDANQTIYSFTGASP 543
RTFHAAALRQL+YFWPQVAGDLPWRL+DNKFP+V RA R+VG++ + + VRD+L EIEWAK++LI+ + Y + + A DR P DP KVA+VY RYE+ K+ +GMLLDFDDLL+HVAGALENAPAVAEEF QQYR+FVVDEYQDVTPLQQRVL AWLGERDDLTVVGDANQTIYSFTGA+P
Sbjct: 82 RTFHAAALRQLRYFWPQVAGDLPWRLLDNKFPLVGRATRSVGLESSTDNVRDLLGEIEWAKATLITPESYPERVGAFDRTPPFDPAKVAEVYRRYEDSKTTEEGMLLDFDDLLLHVAGALENAPAVAEEFHQQYRSFVVDEYQDVTPLQQRVLEAWLGERDDLTVVGDANQTIYSFTGATP 262 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75012.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs75012.1.1 >prot_H-canaliculatus_M_contigs75012.1.1 ID=prot_H-canaliculatus_M_contigs75012.1.1|Name=mRNA_H-canaliculatus_M_contigs75012.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=181bp RTFHAAALRQLKYFWPQVAGDLPWRLVDNKFPIVSRAVRNVGMDPTKETVback to top mRNA from alignment at H-canaliculatus_M_contigs75012:3..545+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs75012.1.1 ID=mRNA_H-canaliculatus_M_contigs75012.1.1|Name=mRNA_H-canaliculatus_M_contigs75012.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=543bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75012:3..545+ (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75012:3..545+ >mRNA_H-canaliculatus_M_contigs75012.1.1 ID=mRNA_H-canaliculatus_M_contigs75012.1.1|Name=mRNA_H-canaliculatus_M_contigs75012.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=543bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75012:3..545+ (Hapterophycus canaliculatus Oshoro7m male)back to top |