mRNA_H-canaliculatus_M_contigs75010.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75010.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75010.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs75010.1.1 vs.
Match: EAL (domain-containing protein n=1 Tax=Thiotrichales bacterium TaxID=2026796 RepID=A0A7V5MQS8_9GAMM)

HSP 1 Score: 53.9 bits (128), Expect = 3.150e-5
Identity = 29/89 (32.58%), Postives = 50/89 (56.18%), Query Frame = 1 
Query:  193 IAIDPEDEHSDLASTLNQVIGKYESATEQIRMAQNRFKQFAETASDWLWESDNELSVSFFHSSSDASSKALTLNNLQGANLLDILEFSD 459
            + +D  DE  +LA + N++I + +++ + +   Q RF+ FAE+ASDWLWE+D EL    + S        ++ + + G  L D+L   D
Sbjct:  415 VHLDRSDELGELAESFNRMIDRLDASRKALEHNQQRFRDFAESASDWLWETD-ELGRLLYVSPGAEDIFGISASEMLGRPLADMLRIDD 502
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BLAST of mRNA_H-canaliculatus_M_contigs75010.1.1 vs.
Match: Ammonium (transporter, Amt family n=1 Tax=Planctomicrobium piriforme TaxID=1576369 RepID=A0A1I3NAU1_9PLAN)

HSP 1 Score: 52.8 bits (125), Expect = 8.010e-5
Identity = 36/115 (31.30%), Postives = 62/115 (53.91%), Query Frame = 1 
Query:   16 CLATWLTVTLLSRFVQIRVPAEAEKLGLNYTEHGESIGLGRLQNALDSKLKDNASFANGIAIDPEDEHSDLASTLNQVIGKY-------ESATEQIRMAQNRFKQFAETASDWLW 339
            C AT   ++++S  V +RV  EAE+ GLN +EHG S  L  L   +  +   +A F+  +A++P  E   +AS  N+V+ K        E    Q++MA+ +F+   E A++ ++
Sbjct:  365 CSATVALLSIVSITVGLRVSPEAERQGLNISEHGASTELTDLLQDMRHQSV-HADFSLPVAVEPHTEVGQIASEYNKVLHKVVGEIEQREGLVSQLKMAEEKFRSMFENATEGIF 478
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75010.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
EAL3.150e-532.58domain-containing protein n=1 Tax=Thiotrichales ba... [more]
Ammonium8.010e-531.30transporter, Amt family n=1 Tax=Planctomicrobium p... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75010contigH-canaliculatus_M_contigs75010:2..532 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1123355.JHYO01000006_gene2236
PFAMsAmmonium_transp,SpoIIE
Model size531
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K03320
KEGG TC1.A.11
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.05e-06
EggNOG OGsCOG0004@1|root,COG2199@1|root,COG0004@2|Bacteria,COG2199@2|Bacteria,1NR9F@1224|Proteobacteria,2TT2J@28211|Alphaproteobacteria,36X5H@31993|Methylocystaceae
DescriptionAmmonium Transporter Family
Cds size531
COG categoryP
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854087.9832888-CDS-H-canaliculatus_M_contigs75010:1..5321696854087.9832888-CDS-H-canaliculatus_M_contigs75010:1..532Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75010 2..532 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75010.1.1prot_H-canaliculatus_M_contigs75010.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75010 2..532 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75010.1.1

>prot_H-canaliculatus_M_contigs75010.1.1 ID=prot_H-canaliculatus_M_contigs75010.1.1|Name=mRNA_H-canaliculatus_M_contigs75010.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=177bp
IAVFTCLATWLTVTLLSRFVQIRVPAEAEKLGLNYTEHGESIGLGRLQNA
LDSKLKDNASFANGIAIDPEDEHSDLASTLNQVIGKYESATEQIRMAQNR
FKQFAETASDWLWESDNELSVSFFHSSSDASSKALTLNNLQGANLLDILE
FSDKELEQLRNCITTGQRIPLLEATIK
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mRNA from alignment at H-canaliculatus_M_contigs75010:2..532+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75010.1.1 ID=mRNA_H-canaliculatus_M_contigs75010.1.1|Name=mRNA_H-canaliculatus_M_contigs75010.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=531bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75010:2..532+ (Hapterophycus canaliculatus Oshoro7m male)
ATCGCGGTATTTACCTGCCTTGCAACCTGGCTCACCGTTACTCTACTTAG
CCGTTTCGTTCAGATTCGCGTACCTGCAGAAGCAGAAAAACTCGGGCTTA
ACTACACAGAACATGGTGAGTCTATAGGGCTTGGCAGACTACAAAACGCA
TTGGACAGTAAGTTGAAAGATAACGCAAGTTTTGCCAATGGCATCGCTAT
TGATCCCGAAGATGAGCATTCCGATCTGGCATCAACACTAAATCAGGTAA
TAGGCAAATATGAATCTGCCACCGAACAGATTCGCATGGCACAGAACCGT
TTTAAACAATTCGCAGAAACCGCGTCTGACTGGCTATGGGAGTCTGACAA
CGAGCTGTCTGTTTCCTTTTTTCATTCCAGCTCTGATGCGAGTTCGAAGG
CACTTACTCTTAATAATCTGCAAGGAGCCAATTTACTGGATATCCTCGAA
TTTTCTGATAAAGAGCTTGAGCAATTGCGTAACTGTATTACGACTGGACA
GCGCATACCGCTGCTCGAAGCAACTATAAAA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75010:2..532+

>mRNA_H-canaliculatus_M_contigs75010.1.1 ID=mRNA_H-canaliculatus_M_contigs75010.1.1|Name=mRNA_H-canaliculatus_M_contigs75010.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=531bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75010:2..532+ (Hapterophycus canaliculatus Oshoro7m male)
ATCGCGGTATTTACCTGCCTTGCAACCTGGCTCACCGTTACTCTACTTAG
CCGTTTCGTTCAGATTCGCGTACCTGCAGAAGCAGAAAAACTCGGGCTTA
ACTACACAGAACATGGTGAGTCTATAGGGCTTGGCAGACTACAAAACGCA
TTGGACAGTAAGTTGAAAGATAACGCAAGTTTTGCCAATGGCATCGCTAT
TGATCCCGAAGATGAGCATTCCGATCTGGCATCAACACTAAATCAGGTAA
TAGGCAAATATGAATCTGCCACCGAACAGATTCGCATGGCACAGAACCGT
TTTAAACAATTCGCAGAAACCGCGTCTGACTGGCTATGGGAGTCTGACAA
CGAGCTGTCTGTTTCCTTTTTTCATTCCAGCTCTGATGCGAGTTCGAAGG
CACTTACTCTTAATAATCTGCAAGGAGCCAATTTACTGGATATCCTCGAA
TTTTCTGATAAAGAGCTTGAGCAATTGCGTAACTGTATTACGACTGGACA
GCGCATACCGCTGCTCGAAGCAACTATAAAA
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