mRNA_H-canaliculatus_M_contigs7501.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7501.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7501.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7501.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K448_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 9.100e-18
Identity = 38/65 (58.46%), Postives = 44/65 (67.69%), Query Frame = 1 
Query:    1 LDADRETLYVFYKATGGADWEYNTGWATGDSDMSEWYGVTIADNDDDGDSSVTEIFLVSNNLEGR 195
            L+ DRE L   Y ATGG DW YN GWATGDSDM+ WYG+TI    ++  S V+ I L  NNLEGR
Sbjct:   26 LELDREALIALYNATGGPDWTYNDGWATGDSDMASWYGLTI----NETTSFVSSISLTKNNLEGR 86
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7501.1.1 vs.
Match: Putative (Leucine Rich Repeat Protein Kinase (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTP4_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 1.630e-9
Identity = 29/57 (50.88%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:   22 LYVFYKATGGADWEYNTGWATGDSDMSEWYGVTIADNDDDGDSSVTEIFLVSNNLEG 192
            L   Y ATGG +W YN GWAT DSDM+ WYG++I    ++  S V+ I L+ NNL+G
Sbjct:   28 LITLYNATGGPNWNYNDGWATDDSDMTSWYGLSI----NETRSYVSSISLIRNNLQG 80
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7501.1.1 vs.
Match: T9SS (C-terminal target domain-containing protein n=1 Tax=Rhodohalobacter sp. SW132 TaxID=2293433 RepID=A0A371QH92_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 1.580e-6
Identity = 26/65 (40.00%), Postives = 36/65 (55.38%), Query Frame = 1 
Query:    1 LDADRETLYVFYKATGGADWEYNTGWATGDSDMSEWYGVTIADNDDDGDSSVTEIFLVSNNLEGR 195
            +  DR+ L   Y ATGG +W+ N+GW  G+   S WYG+ +     DG+  V  + L SNNL G 
Sbjct:   34 VQGDRQALVDLYNATGGGNWDNNSGWLKGNPSNS-WYGIQV-----DGNGRVVRLDLFSNNLNGN 92
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7501.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized9.100e-1858.46protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Putative1.630e-950.88Leucine Rich Repeat Protein Kinase (Partial) (Frag... [more]
T9SS1.580e-640.00C-terminal target domain-containing protein n=1 Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7501contigH-canaliculatus_M_contigs7501:4956..5150 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LTP7
Preferred nameRIPK4
PFAMsAnk_2,Ank_3,Ank_4,Ank_5,Pkinase,Pkinase_Tyr
Model size195
Max annot lvl2759|Eukaryota
KEGG koko:K02861,ko:K08846,ko:K08847,ko:K08848,ko:K16289
KEGG Pathwayko04064,ko04210,ko04217,ko04620,ko04621,ko04622,ko04623,ko04668,ko04722,ko05131,ko05152,ko05160,ko05169,map04064,map04210,map04217,map04620,map04621,map04622,map04623,map04668,map04722,map05131,map05152,map05160,map05169
Hectar predicted targeting categoryother localisation
GOsGO:0002009,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006355,GO:0008150,GO:0009653,GO:0009888,GO:0009889,GO:0010468,GO:0010556,GO:0016020,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0032502,GO:0044093,GO:0044424,GO:0044464,GO:0048518,GO:0048729,GO:0048856,GO:0050789,GO:0050794,GO:0051090,GO:0051091,GO:0051092,GO:0051171,GO:0051252,GO:0060255,GO:0060429,GO:0065007,GO:0065009,GO:0080090,GO:1903506,GO:2000112,GO:2001141
Exons1
Evalue3e-11
EggNOG OGsCOG0515@1|root,KOG0192@2759|Eukaryota
EC2.7.11.1
Descriptionprotein kinase activity
Cds size195
COG categoryKLT
BRITEko00000,ko00001,ko01000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854087.9494677-CDS-H-canaliculatus_M_contigs7501:4955..51501696854087.9494677-CDS-H-canaliculatus_M_contigs7501:4955..5150Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7501 4956..5150 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7501.1.1prot_H-canaliculatus_M_contigs7501.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7501 4956..5150 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7501.1.1

>prot_H-canaliculatus_M_contigs7501.1.1 ID=prot_H-canaliculatus_M_contigs7501.1.1|Name=mRNA_H-canaliculatus_M_contigs7501.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=65bp
LDADRETLYVFYKATGGADWEYNTGWATGDSDMSEWYGVTIADNDDDGDS
SVTEIFLVSNNLEGR
back to top

mRNA from alignment at H-canaliculatus_M_contigs7501:4956..5150+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7501.1.1 ID=mRNA_H-canaliculatus_M_contigs7501.1.1|Name=mRNA_H-canaliculatus_M_contigs7501.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=195bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7501:4956..5150+ (Hapterophycus canaliculatus Oshoro7m male)
CTCGACGCAGATCGAGAGACCCTCTACGTGTTCTACAAGGCAACGGGCGG
CGCGGACTGGGAGTACAACACGGGCTGGGCCACCGGCGACAGCGACATGT
CGGAGTGGTATGGGGTGACCATCGCCGACAACGACGACGACGGCGACTCG
TCCGTCACGGAGATCTTTCTCGTCTCGAACAACCTGGAAGGTAGG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7501:4956..5150+

>mRNA_H-canaliculatus_M_contigs7501.1.1 ID=mRNA_H-canaliculatus_M_contigs7501.1.1|Name=mRNA_H-canaliculatus_M_contigs7501.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=195bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7501:4956..5150+ (Hapterophycus canaliculatus Oshoro7m male)
CTCGACGCAGATCGAGAGACCCTCTACGTGTTCTACAAGGCAACGGGCGG
CGCGGACTGGGAGTACAACACGGGCTGGGCCACCGGCGACAGCGACATGT
CGGAGTGGTATGGGGTGACCATCGCCGACAACGACGACGACGGCGACTCG
TCCGTCACGGAGATCTTTCTCGTCTCGAACAACCTGGAAGGTAGG
back to top