mRNA_H-canaliculatus_M_contigs75007.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75007.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75007.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs75007.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8B0I3_BETVV)

HSP 1 Score: 153 bits (387), Expect = 1.540e-44
Identity = 81/138 (58.70%), Postives = 98/138 (71.01%), Query Frame = 1
Query:   52 RDYRITKAYFRTCSTYGSRSQAHFYLYALRLIADQTECTFALLRYSLGGDRPSQTARLTLSFAPLQGIKVRIKI*PGWYFNNGSEHTSVRTSKPPSYPTQIISQPNSSLQ*RFTGSFRLAAGMWHLHHNYNFTGSVVE 465
            RD+RITKA FR CS + +RSQA FYLYA   IA++ E TFALLRY LGGDRP+QTA L LS     G++++ +   GW F +GS       S PP+Y T + S+PN+ LQ RFTGSFRLAAGM HLH NYNFT S+VE
Sbjct:    6 RDHRITKADFRPCSPHRARSQAPFYLYARCPIANRAEGTFALLRYLLGGDRPNQTAHLALSLRSRDGVRIQTQ--QGWCFIDGSPGAETPGSMPPTYTTHVGSKPNTKLQLRFTGSFRLAAGMSHLHDNYNFTESLVE 141          
BLAST of mRNA_H-canaliculatus_M_contigs75007.1.1 vs.
Match: Cell (wall-associated hydrolase n=1 Tax=Geobacillus sp. BCO2 TaxID=1547578 RepID=A0A0N0I3T1_9BACI)

HSP 1 Score: 129 bits (325), Expect = 1.120e-34
Identity = 70/127 (55.12%), Postives = 86/127 (67.72%), Query Frame = 1
Query:    1 ACYPRSTFYLMSDNPSIRDYRITKAYFRTCSTYGSRSQAHFYLYALRLIADQTECTFALLRYSLGGDRPSQTARLTLSFAPLQGIKVRIKI*PGWYFNNGSEHTSVRTSKPPSYPTQIISQPNSSLQ 381
            ACYPR +FY +SD PS+R++RITK  FR CST  SRSQA   L  LR+I++ +E TF  LRY LGGDRPSQTARLTLS  PL+ ++VRI I PGWY    S       S+ P+YP Q I + +  LQ
Sbjct:  100 ACYPRGSFYPLSDGPSMRNHRITKPDFRPCSTCPSRSQAPLCLCTLRMISNHSEGTFGRLRYLLGGDRPSQTARLTLSPTPLR-VRVRISIPPGWYPTAASTEAGAPASQAPTYPVQAIPKFHIRLQ 225          
BLAST of mRNA_H-canaliculatus_M_contigs75007.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Amblyomma maculatum TaxID=34609 RepID=G3MSX4_AMBMU)

HSP 1 Score: 123 bits (309), Expect = 5.940e-34
Identity = 60/78 (76.92%), Postives = 65/78 (83.33%), Query Frame = 1
Query:    1 ACYPRSTFYLMSDNPSIRDYRITKAYFRTCSTYGSRSQAHFYLYALRLIADQTECTFALLRYSLGGDRPSQTARLTLS 234
            ACYPRSTFY +SD PSIRD+RITK YFRTCS+  SRSQAHF LY L  I+D+TECTF LLRYSLGGDRPSQT   TLS
Sbjct:    8 ACYPRSTFYPLSDGPSIRDHRITKTYFRTCSSRHSRSQAHFCLYTLGTISDRTECTFVLLRYSLGGDRPSQTTNHTLS 85          
BLAST of mRNA_H-canaliculatus_M_contigs75007.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=uncultured bacterium TaxID=77133 RepID=A0A1B2YRG6_9BACT)

HSP 1 Score: 123 bits (308), Expect = 3.290e-33
Identity = 66/126 (52.38%), Postives = 80/126 (63.49%), Query Frame = 1
Query:    1 ACYPRSTFYLMSDNPSIRDYRITKAYFRTCSTYGSRSQAHFYLYALRLIADQTECTFALLRYSLGGDRPSQTARLTLSFAPLQGIKVRIKI*PGWYFNNGSEHTSVRTSKPPSYPTQIISQPNSSL 378
            ACYPRSTFY +SD PS+R++RIT +YFRTCST  S SQA  Y YALR + ++TE TF  LRYS GGD PSQT    L       I VR+ +  GWYF + S   S   SK P+YP   I + N+ L
Sbjct:   15 ACYPRSTFYPLSDGPSMRNHRITMSYFRTCSTCKSCSQAPLYHYALRTVTNRTEGTFESLRYSFGGDHPSQTTHHALF-----PIGVRLSVYKGWYFKDDSTQPSGHASKSPTYPAHHILKINAKL 135          
BLAST of mRNA_H-canaliculatus_M_contigs75007.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L145_LUPAL)

HSP 1 Score: 119 bits (298), Expect = 8.830e-31
Identity = 61/95 (64.21%), Postives = 71/95 (74.74%), Query Frame = 1
Query:    1 ACYPRSTFYLMSDNPSIRDYRITKAYFRTCSTYGSRSQAHFYLYALRLIADQTECTFALLRYSLGGDRPSQTARLTLSFAPLQGIKVRIKI*PGW 285
            ACYPRSTFY +SD PSI+++RITK YFRTCST  SRSQA F LY LR I+D++E TF LLRYSLGGDRPSQTA  TLS   +    + I +  GW
Sbjct:    8 ACYPRSTFYPLSDGPSIQNHRITKTYFRTCSTCLSRSQARFCLYTLRPISDRSERTFVLLRYSLGGDRPSQTAHHTLSSIRMTDQTISISLSLGW 102          
BLAST of mRNA_H-canaliculatus_M_contigs75007.1.1 vs.
Match: Uncharacterized (protein n=4 Tax=Pseudomonas syringae group TaxID=136849 RepID=A0A0N8SDS7_PSESH)

HSP 1 Score: 113 bits (283), Expect = 7.190e-30
Identity = 57/78 (73.08%), Postives = 64/78 (82.05%), Query Frame = 1
Query:    1 ACYPRSTFYLMSDNPSIRDYRITKAYFRTCSTYGSRSQAHFYLYALRLIADQTECTFALLRYSLGGDRPSQTARLTLS 234
            ACYPRSTFY +SD PSI+++RITK YFRTCST  SRSQA F LY LR I+D++E TF LLRYSLGGDRPSQT   TLS
Sbjct:   15 ACYPRSTFYPLSDGPSIQNHRITKTYFRTCSTCLSRSQARFCLYTLRPISDRSERTFVLLRYSLGGDRPSQTTHHTLS 92          
BLAST of mRNA_H-canaliculatus_M_contigs75007.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Legionella quinlivanii TaxID=45073 RepID=A0A0W0XYZ0_9GAMM)

HSP 1 Score: 112 bits (281), Expect = 1.770e-29
Identity = 59/79 (74.68%), Postives = 64/79 (81.01%), Query Frame = -2
Query:    4 GKGQCQSGSLTGAVSSQRVTEECKGTLSLVGNQT*SVKVKVCLTARPISRAGTKVGLSDPVIPNGRVIAHQIKGTPGIT 240
            G+GQC  GSLTGAVSSQRVTEE KGTL  VG++T SVK K CLTAR   RAGTKVGLSDPV+  GR IA +IKGTPGIT
Sbjct:   28 GRGQCMVGSLTGAVSSQRVTEEHKGTLGTVGHRTKSVKAKGCLTARRTCRAGTKVGLSDPVVLYGRAIAQRIKGTPGIT 106          
BLAST of mRNA_H-canaliculatus_M_contigs75007.1.1 vs.
Match: Hipothetical (protein n=1 Tax=Anopheles darlingi TaxID=43151 RepID=A0A2M4CSR9_ANODA)

HSP 1 Score: 110 bits (276), Expect = 3.200e-28
Identity = 61/126 (48.41%), Postives = 71/126 (56.35%), Query Frame = 1
Query:    1 ACYPRSTFYLMSDNPSIRDYRITKAYFRTCSTYGSRSQAHFYLYALRLIADQTECTFALLRYSLGGDRPSQTARLTLSFAPLQGIKVRIKI*PGWYFNNGSEHTSVRTSKPPSYPTQIISQPNSSL 378
            ACYPR TFY +SD  +    +IT   FR CST  S SQA  Y Y   LI +Q E TF  LRY+LGG+RPSQT    LS   + G   R    P WYFNN S  TS   S+ P+YPTQ     N+ L
Sbjct:   22 ACYPRGTFYPLSDTTTTSKRQITSPNFRPCSTSHSHSQAPLYTYTQHLITNQNEGTFGRLRYNLGGNRPSQTTHQALSPTQIMGQGSRGAERPEWYFNNNSTTTSGTASQSPTYPTQTEPNTNTKL 147          
BLAST of mRNA_H-canaliculatus_M_contigs75007.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=uncultured Pseudomonadales bacterium HF0010_05E14 TaxID=710778 RepID=E0XWS9_9GAMM)

HSP 1 Score: 107 bits (268), Expect = 6.430e-28
Identity = 57/72 (79.17%), Postives = 61/72 (84.72%), Query Frame = -2
Query:    4 GSLTGAVSSQRVTEECKGTLSLVGNQT*SVKVKVCLTARPISRAGTKVGLSDPVIPNGRVIAHQIKGTPGIT 219
            GSLTGAVSSQRVTEE +GTLS+VGN   S KVKVCLTAR  SRAGTKVGLSDPV+  GR IA +IKGTPGIT
Sbjct:    2 GSLTGAVSSQRVTEEREGTLSMVGNHAMSAKVKVCLTARLTSRAGTKVGLSDPVVLYGRAIAQRIKGTPGIT 73          
BLAST of mRNA_H-canaliculatus_M_contigs75007.1.1 vs.
Match: Hypothetical (CTC00065, TC0129 n=1 Tax=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) TaxID=272624 RepID=Q5ZY04_LEGPH)

HSP 1 Score: 107 bits (266), Expect = 2.210e-27
Identity = 54/84 (64.29%), Postives = 65/84 (77.38%), Query Frame = 1
Query:    1 ACYPRSTFYLMSDNPSIRDYRITKAYFRTCSTYGSRSQAHFYLYALRLIADQTECTFALLRYSLGGDRPSQTARLTLSFAPLQG 252
            ACYPRSTFY +SD PSI+++RITK  FR+CS+  SRSQA F LY L  ++D+TE TF LLRYSLGGDRPSQT   TLS + + G
Sbjct:    8 ACYPRSTFYPLSDGPSIQNHRITKTNFRSCSSRHSRSQAPFCLYTLGTMSDRTEGTFVLLRYSLGGDRPSQTTHHTLSSSRITG 91          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75007.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized1.540e-4458.70protein n=1 Tax=Beta vulgaris subsp. vulgaris TaxI... [more]
Cell1.120e-3455.12wall-associated hydrolase n=1 Tax=Geobacillus sp. ... [more]
Uncharacterized5.940e-3476.92protein n=1 Tax=Amblyomma maculatum TaxID=34609 Re... [more]
Uncharacterized3.290e-3352.38protein n=1 Tax=uncultured bacterium TaxID=77133 R... [more]
Uncharacterized8.830e-3164.21protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A... [more]
Uncharacterized7.190e-3073.08protein n=4 Tax=Pseudomonas syringae group TaxID=1... [more]
Uncharacterized1.770e-2974.68protein n=1 Tax=Legionella quinlivanii TaxID=45073... [more]
Hipothetical3.200e-2848.41protein n=1 Tax=Anopheles darlingi TaxID=43151 Rep... [more]
Uncharacterized6.430e-2879.17protein n=1 Tax=uncultured Pseudomonadales bacteri... [more]
Hypothetical2.210e-2764.29CTC00065, TC0129 n=1 Tax=Legionella pneumophila su... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75007contigH-canaliculatus_M_contigs75007:1..466 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1094715.CM001373_gene2567
Model size466
Max annot lvl118969|Legionellales
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.99e-23
EggNOG OGs2D0VD@1|root,32T9B@2|Bacteria,1N8N8@1224|Proteobacteria,1SSGZ@1236|Gammaproteobacteria,1JG1Y@118969|Legionellales
DescriptionCOG NOG15344 non supervised orthologous group
Cds size246
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854087.8959246-UTR-H-canaliculatus_M_contigs75007:0..1901696854087.8959246-UTR-H-canaliculatus_M_contigs75007:0..190Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs75007 1..190 -
1696854087.9218895-UTR-H-canaliculatus_M_contigs75007:436..4661696854087.9218895-UTR-H-canaliculatus_M_contigs75007:436..466Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs75007 437..466 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854087.9103963-CDS-H-canaliculatus_M_contigs75007:190..4361696854087.9103963-CDS-H-canaliculatus_M_contigs75007:190..436Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75007 191..436 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75007.1.1prot_H-canaliculatus_M_contigs75007.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75007 191..436 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75007.1.1

>prot_H-canaliculatus_M_contigs75007.1.1 ID=prot_H-canaliculatus_M_contigs75007.1.1|Name=mRNA_H-canaliculatus_M_contigs75007.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=82bp
MSDNPSIRDYRITKAYFRTCSTYGSRSQAHFYLYALRLIADQTECTFALL
RYSLGGDRPSQTARLTLSFAPLQGIKVRIKI*
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mRNA from alignment at H-canaliculatus_M_contigs75007:1..466-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75007.1.1 ID=mRNA_H-canaliculatus_M_contigs75007.1.1|Name=mRNA_H-canaliculatus_M_contigs75007.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=466bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75007:1..466- (Hapterophycus canaliculatus Oshoro7m male)
GCCTGTTATCCCCGGAGTACCTTTTATCTGATGAGCGATAACCCTTCCAT TCGGGATTACCGGATCACTAAGGCCTACTTTCGTACCTGCTCGACTTATG GGTCTCGCAGTCAAGCACACTTTTACCTTTACGCTCTACGTCTGATTGCC GACCAGACTGAGTGTACCTTTGCACTCCTCCGTTACTCTTTGGGAGGAGA CCGCCCCAGTCAAACTGCCCGACTGACACTGTCCTTTGCCCCGCTTCAGG GGATCAAAGTTAGAATTAAAATATAACCAGGCTGGTATTTCAACAACGGC TCAGAACACACTAGCGTGCGAACTTCGAAGCCTCCCAGCTATCCTACACA AATTATATCTCAACCCAATAGCAGCCTACAGTAAAGGTTCACGGGGTCTT TCCGTCTAGCCGCGGGTATGTGGCATCTTCACCACAACTACAATTTCACC GGGTCTGTGGTTGAGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75007:1..466-

>mRNA_H-canaliculatus_M_contigs75007.1.1 ID=mRNA_H-canaliculatus_M_contigs75007.1.1|Name=mRNA_H-canaliculatus_M_contigs75007.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=246bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75007:1..466- (Hapterophycus canaliculatus Oshoro7m male)
ATGAGCGATAACCCTTCCATTCGGGATTACCGGATCACTAAGGCCTACTT
TCGTACCTGCTCGACTTATGGGTCTCGCAGTCAAGCACACTTTTACCTTT
ACGCTCTACGTCTGATTGCCGACCAGACTGAGTGTACCTTTGCACTCCTC
CGTTACTCTTTGGGAGGAGACCGCCCCAGTCAAACTGCCCGACTGACACT
GTCCTTTGCCCCGCTTCAGGGGATCAAAGTTAGAATTAAAATATAA
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