mRNA_H-canaliculatus_M_contigs75006.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75006.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75006.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs75006.1.1 vs.
Match: ferredoxin (family protein n=2 Tax=Rhodobacterales TaxID=204455 RepID=UPI001551CF36)

HSP 1 Score: 79.3 bits (194), Expect = 2.340e-16
Identity = 33/40 (82.50%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:    1 DMADGTKTARMVYDECWYCMPCQADCPTSAVTVSIPYLLK 120
            ++ADGTKTA M YDECWYCMPC+ADCPT AVTV+IPYLLK
Sbjct:   41 ELADGTKTAYMKYDECWYCMPCEADCPTGAVTVTIPYLLK 80
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BLAST of mRNA_H-canaliculatus_M_contigs75006.1.1 vs.
Match: Ferredoxin (n=14 Tax=Rhodobacterales TaxID=204455 RepID=A0A0B3RJ64_9RHOB)

HSP 1 Score: 73.9 bits (180), Expect = 2.870e-14
Identity = 30/37 (81.08%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:   10 DGTKTARMVYDECWYCMPCQADCPTSAVTVSIPYLLK 120
            DG+KTA M YDECWYCMPC+ADCPT AVTV++PYLLK
Sbjct:   44 DGSKTAYMKYDECWYCMPCEADCPTGAVTVNLPYLLK 80
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BLAST of mRNA_H-canaliculatus_M_contigs75006.1.1 vs.
Match: Photosystem (I iron-sulfur center n=1 Tax=Tritonibacter horizontis TaxID=1768241 RepID=A0A132BSC1_9RHOB)

HSP 1 Score: 73.9 bits (180), Expect = 2.870e-14
Identity = 30/37 (81.08%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:   10 DGTKTARMVYDECWYCMPCQADCPTSAVTVSIPYLLK 120
            DGT+TA M YDECWYCMPC+ADCPT AVTV++PYLLK
Sbjct:   44 DGTQTAYMKYDECWYCMPCEADCPTGAVTVNLPYLLK 80
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BLAST of mRNA_H-canaliculatus_M_contigs75006.1.1 vs.
Match: Ferredoxin (family protein n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A7Y5CXV3_HYPSQ)

HSP 1 Score: 70.1 bits (170), Expect = 8.180e-13
Identity = 30/39 (76.92%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    4 MADGTKTARMVYDECWYCMPCQADCPTSAVTVSIPYLLK 120
            ++D T  A M YDECWYCMPCQADCPT AVTV+IPYLLK
Sbjct:   39 ISDLTGKAYMAYDECWYCMPCQADCPTKAVTVNIPYLLK 77
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BLAST of mRNA_H-canaliculatus_M_contigs75006.1.1 vs.
Match: 4Fe-4S (ferredoxin n=1 Tax=Gammaproteobacteria bacterium SG8_15 TaxID=1703403 RepID=A0A0S8ABU1_9GAMM)

HSP 1 Score: 69.3 bits (168), Expect = 1.620e-12
Identity = 29/40 (72.50%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:    1 DMADGTKTARMVYDECWYCMPCQADCPTSAVTVSIPYLLK 120
            DMA+GT  A M YDECWYC+PC+ADCPT+A+TV+IPYLL+
Sbjct:   40 DMAEGT--AYMKYDECWYCLPCEADCPTNAITVNIPYLLR 77
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BLAST of mRNA_H-canaliculatus_M_contigs75006.1.1 vs.
Match: 4Fe-4S (ferredoxin n=3 Tax=Bacteria TaxID=2 RepID=A0A2E7RA04_9PROT)

HSP 1 Score: 68.9 bits (167), Expect = 2.280e-12
Identity = 29/37 (78.38%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:   10 DGTKTARMVYDECWYCMPCQADCPTSAVTVSIPYLLK 120
            D TK A M YDECWYCMPC+ADCPT AV VSIPYLL+
Sbjct:   41 DETKKAYMKYDECWYCMPCEADCPTGAVNVSIPYLLR 77
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BLAST of mRNA_H-canaliculatus_M_contigs75006.1.1 vs.
Match: ferredoxin (family protein n=1 Tax=Actibacterium sp. 188UL27-1 TaxID=2786961 RepID=UPI00195D2971)

HSP 1 Score: 68.6 bits (166), Expect = 3.470e-12
Identity = 28/37 (75.68%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:   10 DGTKTARMVYDECWYCMPCQADCPTSAVTVSIPYLLK 120
            DGTKTA M YDECWYCMPC+A+CPT+AV V++ YLLK
Sbjct:   44 DGTKTAYMKYDECWYCMPCEANCPTNAVIVNLTYLLK 80
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BLAST of mRNA_H-canaliculatus_M_contigs75006.1.1 vs.
Match: 4Fe-4S (dicluster domain-containing protein n=2 Tax=Hyphomicrobium facile TaxID=51670 RepID=A0A1I7MUQ2_9HYPH)

HSP 1 Score: 68.2 bits (165), Expect = 5.280e-12
Identity = 28/35 (80.00%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:   16 TKTARMVYDECWYCMPCQADCPTSAVTVSIPYLLK 120
            T+ A M YDECWYCMPCQ DCPT AVTV+IPYLLK
Sbjct:   49 TQKAYMAYDECWYCMPCQTDCPTDAVTVNIPYLLK 83
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BLAST of mRNA_H-canaliculatus_M_contigs75006.1.1 vs.
Match: Putative (ferredoxin n=111 Tax=Bradyrhizobiaceae TaxID=41294 RepID=M4ZPP7_9BRAD)

HSP 1 Score: 67.8 bits (164), Expect = 6.370e-12
Identity = 28/39 (71.79%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    4 MADGTKTARMVYDECWYCMPCQADCPTSAVTVSIPYLLK 120
            ++D T  A M YDECWYCMPC+ADCPT AVTV+IPYLL+
Sbjct:   39 ISDMTGKAFMAYDECWYCMPCEADCPTGAVTVNIPYLLR 77
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75006.1.1 vs.
Match: Adenylylsulfate (reductase beta subunit n=22 Tax=Proteobacteria TaxID=1224 RepID=K0CJ22_ALCDB)

HSP 1 Score: 67.0 bits (162), Expect = 1.260e-11
Identity = 27/37 (72.97%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:   10 DGTKTARMVYDECWYCMPCQADCPTSAVTVSIPYLLK 120
            + T  A M YDECWYCMPC+ADCPT AVTV+IPYLL+
Sbjct:   41 ESTGKAHMKYDECWYCMPCEADCPTDAVTVNIPYLLR 77
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75006.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
ferredoxin2.340e-1682.50family protein n=2 Tax=Rhodobacterales TaxID=20445... [more]
Ferredoxin2.870e-1481.08n=14 Tax=Rhodobacterales TaxID=204455 RepID=A0A0B3... [more]
Photosystem2.870e-1481.08I iron-sulfur center n=1 Tax=Tritonibacter horizon... [more]
Ferredoxin8.180e-1376.92family protein n=1 Tax=Hyphomicrobium sp. TaxID=82... [more]
4Fe-4S1.620e-1272.50ferredoxin n=1 Tax=Gammaproteobacteria bacterium S... [more]
4Fe-4S2.280e-1278.38ferredoxin n=3 Tax=Bacteria TaxID=2 RepID=A0A2E7RA... [more]
ferredoxin3.470e-1275.68family protein n=1 Tax=Actibacterium sp. 188UL27-1... [more]
4Fe-4S5.280e-1280.00dicluster domain-containing protein n=2 Tax=Hyphom... [more]
Putative6.370e-1271.79ferredoxin n=111 Tax=Bradyrhizobiaceae TaxID=41294... [more]
Adenylylsulfate1.260e-1172.97reductase beta subunit n=22 Tax=Proteobacteria Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75006contigH-canaliculatus_M_contigs75006:3..544 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Model size542
Hectar predicted targeting categoryother localisation
Exons1
Cds size423
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854087.8509028-CDS-H-canaliculatus_M_contigs75006:2..4251696854087.8509028-CDS-H-canaliculatus_M_contigs75006:2..425Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75006 3..425 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854087.8634574-UTR-H-canaliculatus_M_contigs75006:425..5441696854087.8634574-UTR-H-canaliculatus_M_contigs75006:425..544Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs75006 426..544 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75006.1.1prot_H-canaliculatus_M_contigs75006.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75006 3..425 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75006.1.1

>prot_H-canaliculatus_M_contigs75006.1.1 ID=prot_H-canaliculatus_M_contigs75006.1.1|Name=mRNA_H-canaliculatus_M_contigs75006.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=141bp
MNSSGVFETFSELEELAEQLEDEDAGLRHVTVIRLGETADPDAIPLLRIA
IQDTAEGVRQQAALALGNFDGPDASEALVIGLMDSSTEVAQASATSLCEL
KDPLAAIAIYPLLDSESEYVRAAAFNGLKELRNPDSLGPAI
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mRNA from alignment at H-canaliculatus_M_contigs75006:3..544-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75006.1.1 ID=mRNA_H-canaliculatus_M_contigs75006.1.1|Name=mRNA_H-canaliculatus_M_contigs75006.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=542bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75006:3..544- (Hapterophycus canaliculatus Oshoro7m male)
GATATGGCTGATGGTACAAAGACTGCGCGTATGGTCTACGACGAGTGCTG
GTACTGCATGCCGTGTCAGGCAGACTGCCCAACAAGCGCGGTAACGGTAT
CCATTCCGTACTTGCTAAAATGAATTCCTCCGGCGTTTTTGAAACGTTTT
CAGAACTCGAGGAGCTCGCTGAGCAGCTTGAGGATGAAGATGCAGGTTTA
CGTCATGTCACGGTGATTCGGCTAGGCGAGACAGCAGATCCTGACGCTAT
TCCTTTGCTGCGCATCGCCATTCAAGATACTGCAGAGGGTGTGCGCCAGC
AGGCCGCGTTAGCCCTGGGAAATTTTGATGGTCCTGATGCTTCAGAGGCC
TTGGTTATTGGGTTGATGGATTCGTCGACAGAGGTTGCGCAAGCTTCTGC
CACAAGTCTATGTGAGTTAAAAGACCCGCTAGCCGCCATTGCGATTTATC
CATTATTGGATTCGGAAAGTGAATACGTAAGGGCAGCAGCGTTCAACGGT
TTGAAAGAGTTGCGTAATCCAGACTCACTAGGTCCAGCCATA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75006:3..544-

>mRNA_H-canaliculatus_M_contigs75006.1.1 ID=mRNA_H-canaliculatus_M_contigs75006.1.1|Name=mRNA_H-canaliculatus_M_contigs75006.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=423bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75006:3..544- (Hapterophycus canaliculatus Oshoro7m male)
ATGAATTCCTCCGGCGTTTTTGAAACGTTTTCAGAACTCGAGGAGCTCGC
TGAGCAGCTTGAGGATGAAGATGCAGGTTTACGTCATGTCACGGTGATTC
GGCTAGGCGAGACAGCAGATCCTGACGCTATTCCTTTGCTGCGCATCGCC
ATTCAAGATACTGCAGAGGGTGTGCGCCAGCAGGCCGCGTTAGCCCTGGG
AAATTTTGATGGTCCTGATGCTTCAGAGGCCTTGGTTATTGGGTTGATGG
ATTCGTCGACAGAGGTTGCGCAAGCTTCTGCCACAAGTCTATGTGAGTTA
AAAGACCCGCTAGCCGCCATTGCGATTTATCCATTATTGGATTCGGAAAG
TGAATACGTAAGGGCAGCAGCGTTCAACGGTTTGAAAGAGTTGCGTAATC
CAGACTCACTAGGTCCAGCCATA
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