mRNA_H-canaliculatus_M_contigs74998.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs74998.1.1
Unique NamemRNA_H-canaliculatus_M_contigs74998.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs74998.1.1 vs.
Match: Oxygen (regulatory protein NreC n=1 Tax=Rhodopirellula pilleata TaxID=2714738 RepID=A0A5C5ZY23_9BACT)

HSP 1 Score: 103 bits (256), Expect = 2.230e-25
Identity = 46/61 (75.41%), Postives = 55/61 (90.16%), Query Frame = 1
Query:   61 RLDVPHFDPSSIWNAISQTSGIGISIMNSEGALLFVNDTSKVLFFDQAEVDYVGKTIRDFH 243
            R D PHFDP+SIW+AIS+T G+GISIM+S+G LLF+NDTSKVLFFD+ +VDY GKTIRDFH
Sbjct:   23 RQDEPHFDPASIWSAISKTPGVGISIMDSDGGLLFINDTSKVLFFDRDQVDYQGKTIRDFH 83          
BLAST of mRNA_H-canaliculatus_M_contigs74998.1.1 vs.
Match: DNA-binding (transcriptional activator UhpA n=1 Tax=Rubripirellula obstinata TaxID=406547 RepID=A0A5B1CLW8_9BACT)

HSP 1 Score: 88.6 bits (218), Expect = 8.210e-20
Identity = 39/61 (63.93%), Postives = 49/61 (80.33%), Query Frame = 1
Query:   61 RLDVPHFDPSSIWNAISQTSGIGISIMNSEGALLFVNDTSKVLFFDQAEVDYVGKTIRDFH 243
            R+D P  DP+S+W A+SQT G+G+SI +SEG LLFVNDT+KVLF +  +VDY GK IRDFH
Sbjct:   15 RVDPPQIDPASLWAALSQTKGVGVSITDSEGRLLFVNDTAKVLFSESVDVDYQGKFIRDFH 75          
BLAST of mRNA_H-canaliculatus_M_contigs74998.1.1 vs.
Match: Putative (transcription factor YjjQ n=1 Tax=Stieleria varia TaxID=2528005 RepID=A0A5C5ZVJ2_9BACT)

HSP 1 Score: 86.7 bits (213), Expect = 5.050e-19
Identity = 39/66 (59.09%), Postives = 51/66 (77.27%), Query Frame = 1
Query:   46 RVSPQRLDVPHFDPSSIWNAISQTSGIGISIMNSEGALLFVNDTSKVLFFDQAEVDYVGKTIRDFH 243
            RVSPQR+D P FDP+SIW A++ T GIG+ +M+ +G L+FVN+T+  LFFD   +DY GKTI DFH
Sbjct:   16 RVSPQRIDPPEFDPTSIWMALTNTEGIGVCVMDRQGGLIFVNETTLGLFFDHP-IDYHGKTIADFH 80          
BLAST of mRNA_H-canaliculatus_M_contigs74998.1.1 vs.
Match: Bacterial (regulatory protein, luxR family n=1 Tax=Novipirellula artificiosorum TaxID=2528016 RepID=A0A5C6DJC0_9BACT)

HSP 1 Score: 85.1 bits (209), Expect = 1.940e-18
Identity = 37/61 (60.66%), Postives = 47/61 (77.05%), Query Frame = 1
Query:   61 RLDVPHFDPSSIWNAISQTSGIGISIMNSEGALLFVNDTSKVLFFDQAEVDYVGKTIRDFH 243
            R+D P  DP SIW A+S+T G+G+SI ++EG LLFVNDTSKVLF   +++DY GK I DFH
Sbjct:   13 RIDPPELDPGSIWRALSRTPGVGVSITDAEGRLLFVNDTSKVLFSKSSDIDYEGKRISDFH 73          
BLAST of mRNA_H-canaliculatus_M_contigs74998.1.1 vs.
Match: Oxygen (regulatory protein NreC n=2 Tax=Rubripirellula reticaptiva TaxID=2528013 RepID=A0A5C6F787_9BACT)

HSP 1 Score: 78.2 bits (191), Expect = 1.650e-15
Identity = 35/61 (57.38%), Postives = 46/61 (75.41%), Query Frame = 1
Query:   61 RLDVPHFDPSSIWNAISQTSGIGISIMNSEGALLFVNDTSKVLFFDQAEVDYVGKTIRDFH 243
            R+D P +DP+SIW A+S T GIG+SI + EG L+FVNDTS VLF    ++DY+GK I D+H
Sbjct:   68 RIDPPAYDPTSIWAALSCTPGIGVSITDVEGRLIFVNDTSMVLFSQATKLDYLGKRISDYH 128          
BLAST of mRNA_H-canaliculatus_M_contigs74998.1.1 vs.
Match: Bacterial (regulatory protein, luxR family n=1 Tax=Aureliella helgolandensis TaxID=2527968 RepID=A0A518FZW6_9BACT)

HSP 1 Score: 74.7 bits (182), Expect = 2.090e-14
Identity = 35/61 (57.38%), Postives = 43/61 (70.49%), Query Frame = 1
Query:   61 RLDVPHFDPSSIWNAISQTSGIGISIMNSEGALLFVNDTSKVLFFDQAEVDYVGKTIRDFH 243
            R D P   P S+WNA+S T GIG+SI ++EG LLFVNDT+  LF  + EV+Y GK I DFH
Sbjct:   22 RQDPPDLPPMSVWNALSCTPGIGVSITDAEGRLLFVNDTAMQLFSQELEVEYRGKHIADFH 82          
BLAST of mRNA_H-canaliculatus_M_contigs74998.1.1 vs.
Match: Response (regulator UvrY n=2 Tax=Rubripirellula lacrimiformis TaxID=1930273 RepID=A0A517N4B9_9BACT)

HSP 1 Score: 73.6 bits (179), Expect = 6.010e-14
Identity = 33/59 (55.93%), Postives = 43/59 (72.88%), Query Frame = 1
Query:   67 DVPHFDPSSIWNAISQTSGIGISIMNSEGALLFVNDTSKVLFFDQAEVDYVGKTIRDFH 243
            D+P  D +S+W A SQT G+G+SI +++G LLFVNDT+ VLF   AE+ Y GK I DFH
Sbjct:   34 DLPPLDAASLWAAFSQTKGVGVSITDAQGRLLFVNDTAMVLFSKTAEIAYQGKCISDFH 92          
BLAST of mRNA_H-canaliculatus_M_contigs74998.1.1 vs.
Match: LuxR (family transcriptional regulator n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3B8ZIC5_9PLAN)

HSP 1 Score: 66.2 bits (160), Expect = 2.940e-11
Identity = 29/62 (46.77%), Postives = 42/62 (67.74%), Query Frame = 1
Query:   58 QRLDVPHFDPSSIWNAISQTSGIGISIMNSEGALLFVNDTSKVLFFDQAEVDYVGKTIRDFH 243
            +R+D+      ++W A SQT G+G+SI +++G L+FVNDTS V F    +VDY  +TI DFH
Sbjct:   17 RRIDLGSGAGQALWTAFSQTPGVGVSITDTQGRLIFVNDTSLVFFSGSPDVDYQNRTIADFH 78          
BLAST of mRNA_H-canaliculatus_M_contigs74998.1.1 vs.
Match: Transcription (regulator LuxR n=2 Tax=Rhodopirellula TaxID=265488 RepID=M5TDD0_9BACT)

HSP 1 Score: 65.5 bits (158), Expect = 3.900e-11
Identity = 29/51 (56.86%), Postives = 39/51 (76.47%), Query Frame = 1
Query:   91 SIWNAISQTSGIGISIMNSEGALLFVNDTSKVLFFDQAEVDYVGKTIRDFH 243
            S+W A+++T+G+GISI ++EG LLFVNDT+ VLF     +DY GK I DFH
Sbjct:    2 SLWAAVTRTAGVGISITDAEGRLLFVNDTAMVLFSQCTGIDYQGKKISDFH 52          
BLAST of mRNA_H-canaliculatus_M_contigs74998.1.1 vs.
Match: Oxygen (regulatory protein NreC n=1 Tax=Rubripirellula tenax TaxID=2528015 RepID=A0A5C6FAX3_9BACT)

HSP 1 Score: 62.0 bits (149), Expect = 1.110e-9
Identity = 26/61 (42.62%), Postives = 42/61 (68.85%), Query Frame = 1
Query:   61 RLDVPHFDPSSIWNAISQTSGIGISIMNSEGALLFVNDTSKVLFFDQAEVDYVGKTIRDFH 243
            R+D P F  +++W+A+S+T G+G+S+++    LLFVN  S+  F   A+ D  GK++RDFH
Sbjct:   14 RVDPPDFGKNTLWDALSRTPGVGLSVIDVHERLLFVNAVSREWFLGSADADVDGKSMRDFH 74          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs74998.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
Oxygen2.230e-2575.41regulatory protein NreC n=1 Tax=Rhodopirellula pil... [more]
DNA-binding8.210e-2063.93transcriptional activator UhpA n=1 Tax=Rubripirell... [more]
Putative5.050e-1959.09transcription factor YjjQ n=1 Tax=Stieleria varia ... [more]
Bacterial1.940e-1860.66regulatory protein, luxR family n=1 Tax=Novipirell... [more]
Oxygen1.650e-1557.38regulatory protein NreC n=2 Tax=Rubripirellula ret... [more]
Bacterial2.090e-1457.38regulatory protein, luxR family n=1 Tax=Aureliella... [more]
Response6.010e-1455.93regulator UvrY n=2 Tax=Rubripirellula lacrimiformi... [more]
LuxR2.940e-1146.77family transcriptional regulator n=1 Tax=Planctomy... [more]
Transcription3.900e-1156.86regulator LuxR n=2 Tax=Rhodopirellula TaxID=265488... [more]
Oxygen1.110e-942.62regulatory protein NreC n=1 Tax=Rubripirellula ten... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs74998contigH-canaliculatus_M_contigs74998:302..544 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog595460.RRSWK_05568
PFAMsGerE,PAS_4
Model size243
Max annot lvl203682|Planctomycetes
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.08e-12
EggNOG OGsCOG2197@1|root,COG2197@2|Bacteria,2J4P2@203682|Planctomycetes
Descriptionhelix_turn_helix, Lux Regulon
Cds size225
COG categoryK
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854087.6511457-UTR-H-canaliculatus_M_contigs74998:301..3191696854087.6511457-UTR-H-canaliculatus_M_contigs74998:301..319Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs74998 302..319 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854087.6624253-CDS-H-canaliculatus_M_contigs74998:319..5441696854087.6624253-CDS-H-canaliculatus_M_contigs74998:319..544Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs74998 320..544 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs74998.1.1prot_H-canaliculatus_M_contigs74998.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs74998 320..544 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs74998.1.1

>prot_H-canaliculatus_M_contigs74998.1.1 ID=prot_H-canaliculatus_M_contigs74998.1.1|Name=mRNA_H-canaliculatus_M_contigs74998.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=75bp
MKGDATKAGRVSPQRLDVPHFDPSSIWNAISQTSGIGISIMNSEGALLFV
NDTSKVLFFDQAEVDYVGKTIRDFH
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mRNA from alignment at H-canaliculatus_M_contigs74998:302..544+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs74998.1.1 ID=mRNA_H-canaliculatus_M_contigs74998.1.1|Name=mRNA_H-canaliculatus_M_contigs74998.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=243bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74998:302..544+ (Hapterophycus canaliculatus Oshoro7m male)
GATCCTTCGTCAGCTGCCATGAAAGGGGACGCGACCAAAGCGGGGCGAGT TTCGCCTCAGCGTCTCGACGTCCCTCACTTTGATCCCTCATCAATTTGGA ATGCAATTTCGCAGACAAGTGGCATTGGAATCAGCATCATGAATTCAGAA GGTGCTTTGCTTTTCGTCAACGACACCTCCAAGGTGCTTTTCTTTGACCA AGCCGAAGTGGACTACGTGGGCAAAACAATTCGGGATTTTCAT
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs74998:302..544+

>mRNA_H-canaliculatus_M_contigs74998.1.1 ID=mRNA_H-canaliculatus_M_contigs74998.1.1|Name=mRNA_H-canaliculatus_M_contigs74998.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=225bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74998:302..544+ (Hapterophycus canaliculatus Oshoro7m male)
ATGAAAGGGGACGCGACCAAAGCGGGGCGAGTTTCGCCTCAGCGTCTCGA
CGTCCCTCACTTTGATCCCTCATCAATTTGGAATGCAATTTCGCAGACAA
GTGGCATTGGAATCAGCATCATGAATTCAGAAGGTGCTTTGCTTTTCGTC
AACGACACCTCCAAGGTGCTTTTCTTTGACCAAGCCGAAGTGGACTACGT
GGGCAAAACAATTCGGGATTTTCAT
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