mRNA_H-canaliculatus_M_contigs74998.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
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Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs74998.1.1 vs.
Match: Oxygen (regulatory protein NreC n=1 Tax=Rhodopirellula pilleata TaxID=2714738 RepID=A0A5C5ZY23_9BACT) HSP 1 Score: 103 bits (256), Expect = 2.230e-25 Identity = 46/61 (75.41%), Postives = 55/61 (90.16%), Query Frame = 1
Query: 61 RLDVPHFDPSSIWNAISQTSGIGISIMNSEGALLFVNDTSKVLFFDQAEVDYVGKTIRDFH 243
R D PHFDP+SIW+AIS+T G+GISIM+S+G LLF+NDTSKVLFFD+ +VDY GKTIRDFH
Sbjct: 23 RQDEPHFDPASIWSAISKTPGVGISIMDSDGGLLFINDTSKVLFFDRDQVDYQGKTIRDFH 83
BLAST of mRNA_H-canaliculatus_M_contigs74998.1.1 vs.
Match: DNA-binding (transcriptional activator UhpA n=1 Tax=Rubripirellula obstinata TaxID=406547 RepID=A0A5B1CLW8_9BACT) HSP 1 Score: 88.6 bits (218), Expect = 8.210e-20 Identity = 39/61 (63.93%), Postives = 49/61 (80.33%), Query Frame = 1
Query: 61 RLDVPHFDPSSIWNAISQTSGIGISIMNSEGALLFVNDTSKVLFFDQAEVDYVGKTIRDFH 243
R+D P DP+S+W A+SQT G+G+SI +SEG LLFVNDT+KVLF + +VDY GK IRDFH
Sbjct: 15 RVDPPQIDPASLWAALSQTKGVGVSITDSEGRLLFVNDTAKVLFSESVDVDYQGKFIRDFH 75
BLAST of mRNA_H-canaliculatus_M_contigs74998.1.1 vs.
Match: Putative (transcription factor YjjQ n=1 Tax=Stieleria varia TaxID=2528005 RepID=A0A5C5ZVJ2_9BACT) HSP 1 Score: 86.7 bits (213), Expect = 5.050e-19 Identity = 39/66 (59.09%), Postives = 51/66 (77.27%), Query Frame = 1
Query: 46 RVSPQRLDVPHFDPSSIWNAISQTSGIGISIMNSEGALLFVNDTSKVLFFDQAEVDYVGKTIRDFH 243
RVSPQR+D P FDP+SIW A++ T GIG+ +M+ +G L+FVN+T+ LFFD +DY GKTI DFH
Sbjct: 16 RVSPQRIDPPEFDPTSIWMALTNTEGIGVCVMDRQGGLIFVNETTLGLFFDHP-IDYHGKTIADFH 80
BLAST of mRNA_H-canaliculatus_M_contigs74998.1.1 vs.
Match: Bacterial (regulatory protein, luxR family n=1 Tax=Novipirellula artificiosorum TaxID=2528016 RepID=A0A5C6DJC0_9BACT) HSP 1 Score: 85.1 bits (209), Expect = 1.940e-18 Identity = 37/61 (60.66%), Postives = 47/61 (77.05%), Query Frame = 1
Query: 61 RLDVPHFDPSSIWNAISQTSGIGISIMNSEGALLFVNDTSKVLFFDQAEVDYVGKTIRDFH 243
R+D P DP SIW A+S+T G+G+SI ++EG LLFVNDTSKVLF +++DY GK I DFH
Sbjct: 13 RIDPPELDPGSIWRALSRTPGVGVSITDAEGRLLFVNDTSKVLFSKSSDIDYEGKRISDFH 73
BLAST of mRNA_H-canaliculatus_M_contigs74998.1.1 vs.
Match: Oxygen (regulatory protein NreC n=2 Tax=Rubripirellula reticaptiva TaxID=2528013 RepID=A0A5C6F787_9BACT) HSP 1 Score: 78.2 bits (191), Expect = 1.650e-15 Identity = 35/61 (57.38%), Postives = 46/61 (75.41%), Query Frame = 1
Query: 61 RLDVPHFDPSSIWNAISQTSGIGISIMNSEGALLFVNDTSKVLFFDQAEVDYVGKTIRDFH 243
R+D P +DP+SIW A+S T GIG+SI + EG L+FVNDTS VLF ++DY+GK I D+H
Sbjct: 68 RIDPPAYDPTSIWAALSCTPGIGVSITDVEGRLIFVNDTSMVLFSQATKLDYLGKRISDYH 128
BLAST of mRNA_H-canaliculatus_M_contigs74998.1.1 vs.
Match: Bacterial (regulatory protein, luxR family n=1 Tax=Aureliella helgolandensis TaxID=2527968 RepID=A0A518FZW6_9BACT) HSP 1 Score: 74.7 bits (182), Expect = 2.090e-14 Identity = 35/61 (57.38%), Postives = 43/61 (70.49%), Query Frame = 1
Query: 61 RLDVPHFDPSSIWNAISQTSGIGISIMNSEGALLFVNDTSKVLFFDQAEVDYVGKTIRDFH 243
R D P P S+WNA+S T GIG+SI ++EG LLFVNDT+ LF + EV+Y GK I DFH
Sbjct: 22 RQDPPDLPPMSVWNALSCTPGIGVSITDAEGRLLFVNDTAMQLFSQELEVEYRGKHIADFH 82
BLAST of mRNA_H-canaliculatus_M_contigs74998.1.1 vs.
Match: Response (regulator UvrY n=2 Tax=Rubripirellula lacrimiformis TaxID=1930273 RepID=A0A517N4B9_9BACT) HSP 1 Score: 73.6 bits (179), Expect = 6.010e-14 Identity = 33/59 (55.93%), Postives = 43/59 (72.88%), Query Frame = 1
Query: 67 DVPHFDPSSIWNAISQTSGIGISIMNSEGALLFVNDTSKVLFFDQAEVDYVGKTIRDFH 243
D+P D +S+W A SQT G+G+SI +++G LLFVNDT+ VLF AE+ Y GK I DFH
Sbjct: 34 DLPPLDAASLWAAFSQTKGVGVSITDAQGRLLFVNDTAMVLFSKTAEIAYQGKCISDFH 92
BLAST of mRNA_H-canaliculatus_M_contigs74998.1.1 vs.
Match: LuxR (family transcriptional regulator n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3B8ZIC5_9PLAN) HSP 1 Score: 66.2 bits (160), Expect = 2.940e-11 Identity = 29/62 (46.77%), Postives = 42/62 (67.74%), Query Frame = 1
Query: 58 QRLDVPHFDPSSIWNAISQTSGIGISIMNSEGALLFVNDTSKVLFFDQAEVDYVGKTIRDFH 243
+R+D+ ++W A SQT G+G+SI +++G L+FVNDTS V F +VDY +TI DFH
Sbjct: 17 RRIDLGSGAGQALWTAFSQTPGVGVSITDTQGRLIFVNDTSLVFFSGSPDVDYQNRTIADFH 78
BLAST of mRNA_H-canaliculatus_M_contigs74998.1.1 vs.
Match: Transcription (regulator LuxR n=2 Tax=Rhodopirellula TaxID=265488 RepID=M5TDD0_9BACT) HSP 1 Score: 65.5 bits (158), Expect = 3.900e-11 Identity = 29/51 (56.86%), Postives = 39/51 (76.47%), Query Frame = 1
Query: 91 SIWNAISQTSGIGISIMNSEGALLFVNDTSKVLFFDQAEVDYVGKTIRDFH 243
S+W A+++T+G+GISI ++EG LLFVNDT+ VLF +DY GK I DFH
Sbjct: 2 SLWAAVTRTAGVGISITDAEGRLLFVNDTAMVLFSQCTGIDYQGKKISDFH 52
BLAST of mRNA_H-canaliculatus_M_contigs74998.1.1 vs.
Match: Oxygen (regulatory protein NreC n=1 Tax=Rubripirellula tenax TaxID=2528015 RepID=A0A5C6FAX3_9BACT) HSP 1 Score: 62.0 bits (149), Expect = 1.110e-9 Identity = 26/61 (42.62%), Postives = 42/61 (68.85%), Query Frame = 1
Query: 61 RLDVPHFDPSSIWNAISQTSGIGISIMNSEGALLFVNDTSKVLFFDQAEVDYVGKTIRDFH 243
R+D P F +++W+A+S+T G+G+S+++ LLFVN S+ F A+ D GK++RDFH
Sbjct: 14 RVDPPDFGKNTLWDALSRTPGVGLSVIDVHERLLFVNAVSREWFLGSADADVDGKSMRDFH 74 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs74998.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs74998.1.1 >prot_H-canaliculatus_M_contigs74998.1.1 ID=prot_H-canaliculatus_M_contigs74998.1.1|Name=mRNA_H-canaliculatus_M_contigs74998.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=75bp MKGDATKAGRVSPQRLDVPHFDPSSIWNAISQTSGIGISIMNSEGALLFVback to top mRNA from alignment at H-canaliculatus_M_contigs74998:302..544+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs74998.1.1 ID=mRNA_H-canaliculatus_M_contigs74998.1.1|Name=mRNA_H-canaliculatus_M_contigs74998.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=243bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74998:302..544+ (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs74998:302..544+ >mRNA_H-canaliculatus_M_contigs74998.1.1 ID=mRNA_H-canaliculatus_M_contigs74998.1.1|Name=mRNA_H-canaliculatus_M_contigs74998.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=225bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74998:302..544+ (Hapterophycus canaliculatus Oshoro7m male)back to top |