mRNA_H-canaliculatus_M_contigs7499.2.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7499.2.1
Unique NamemRNA_H-canaliculatus_M_contigs7499.2.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7499.2.1 vs.
Match: Uncharacterized (protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6NM36_TRISU)

HSP 1 Score: 58.2 bits (139), Expect = 8.390e-8
Identity = 34/86 (39.53%), Postives = 50/86 (58.14%), Query Frame = 1 
Query:   31 QALLGAVAEFIVLDQQPFNVVEADSFKNLIQVAANDTSITVPSRPTVSKRVSTMAISAQGNIREQMKG--TRPALTTDGWTSCSGV 282
            +A   AV++FI+LD+QPF VVE + FK LI+        T+PSR T+S+    + +  +  +R   +   TR ALTTD WTS   +
Sbjct:  130 EACKRAVSKFIILDEQPFKVVEGEGFKQLIRTLQPQ--YTIPSRYTISRDCFKLYLEEKARLRALFRSDCTRVALTTDCWTSVQNL 213
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7499.2.1 vs.
Match: Hypothetical (protein n=1 Tax=Allacma fusca TaxID=39272 RepID=A0A8J2L806_9HEXA)

HSP 1 Score: 57.8 bits (138), Expect = 1.080e-7
Identity = 33/92 (35.87%), Postives = 53/92 (57.61%), Query Frame = 1 
Query:   16 RSLTQQALLGAVAEFIVLDQQPFNVVEADSFKNLIQVAANDTSITVPSRPTVSKRVSTMAISAQGNIREQMKGT--RPALTTDGWTSCSGVS 285
            R  + + L   + EFI++  QPF++VEADSF+ LI+  A   SI +P R +V +++ TM    + N+ E +K    +  +  D WTS +G S
Sbjct:   49 RKCSDEELHRLIVEFIIMTDQPFSIVEADSFEKLIEFLAQK-SIKIPRRDSVKRKIETMFEREKANVAELIKNAPEKIFIVVDCWTSRTGKS 139
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7499.2.1 vs.
Match: HAT (family dimerization domain-containing protein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3LC77_TRIPR)

HSP 1 Score: 56.6 bits (135), Expect = 3.070e-7
Identity = 33/86 (38.37%), Postives = 50/86 (58.14%), Query Frame = 1 
Query:   31 QALLGAVAEFIVLDQQPFNVVEADSFKNLIQVAANDTSITVPSRPTVSKRVSTMAISAQGNIREQMKG--TRPALTTDGWTSCSGV 282
            +A   A+++FI+LD+QPF VVE + FK LI+        T+PSR TVS+    + +  +  +R   +   +R ALTTD WTS   +
Sbjct:  122 EACKTAISKFIILDEQPFRVVEGEGFKQLIRTLQPQ--YTIPSRYTVSRDCFKLYLEEKARLRALFRSDCSRVALTTDCWTSVQNL 205
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7499.2.1 vs.
Match: BED-type (domain-containing protein n=5 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7KJ54_PAPSO)

HSP 1 Score: 53.5 bits (127), Expect = 3.750e-6
Identity = 32/86 (37.21%), Postives = 48/86 (55.81%), Query Frame = 1 
Query:   19 SLTQQALLGAVAEFIVLDQQPFNVVEADSFKNLIQVAANDTSITVPSRPTVSKRVSTMAISAQGNIREQMK--GTRPALTTDGWTS 270
            +  Q A   AV  F++LD+QPF VVE + FK L +V   ++   +PSR T+S+ V  +  + +  ++   K    R  LTTD WTS
Sbjct:  210 TFNQDACTKAVILFVILDEQPFRVVEGEGFKELCRVL--ESRFKIPSRMTISRGVLNLYEAEKEKMKNYFKENNVRVCLTTDTWTS 293
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7499.2.1 vs.
Match: zinc (finger BED domain-containing protein DAYSLEEPER-like n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=UPI0009058986)

HSP 1 Score: 53.1 bits (126), Expect = 4.870e-6
Identity = 29/76 (38.16%), Postives = 43/76 (56.58%), Query Frame = 1 
Query:   55 EFIVLDQQPFNVVEADSFKNLIQVAANDTSITVPSRPTVSKRVSTMAISAQGNIREQMKGTRPALTTDGWTSCSGV 282
            EF++LD+QPF VVE + FK LI  A  +    +PSR TV++    +    +  I+  +K  R  LT+D WTS   +
Sbjct:   81 EFVILDEQPFRVVEGEGFKKLIAKALPN--FELPSRVTVARHCLRIYHEEKAKIKNLIKNQRVCLTSDTWTSLQNL 154
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7499.2.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
Uncharacterized8.390e-839.53protein n=1 Tax=Trifolium subterraneum TaxID=3900 ... [more]
Hypothetical1.080e-735.87protein n=1 Tax=Allacma fusca TaxID=39272 RepID=A0... [more]
HAT3.070e-738.37family dimerization domain-containing protein (Fra... [more]
BED-type3.750e-637.21domain-containing protein n=5 Tax=Papaver somnifer... [more]
zinc4.870e-638.16finger BED domain-containing protein DAYSLEEPER-li... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7499contigH-canaliculatus_M_contigs7499:4658..4942 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog3750.XP_008357946.1
PFAMsArm
Model size285
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464
Exons1
Evalue2.82e-06
EggNOG OGsKOG0167@1|root,KOG1121@1|root,KOG0167@2759|Eukaryota,KOG1121@2759|Eukaryota,37HUT@33090|Viridiplantae,3GESK@35493|Streptophyta,4JDER@91835|fabids
DescriptionArmadillo/beta-catenin-like repeat
Cds size285
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854087.5744915-CDS-H-canaliculatus_M_contigs7499:4657..49421696854087.5744915-CDS-H-canaliculatus_M_contigs7499:4657..4942Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7499 4658..4942 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7499.2.1prot_H-canaliculatus_M_contigs7499.2.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7499 4658..4942 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7499.2.1

>prot_H-canaliculatus_M_contigs7499.2.1 ID=prot_H-canaliculatus_M_contigs7499.2.1|Name=mRNA_H-canaliculatus_M_contigs7499.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=95bp
SHFRPRSLTQQALLGAVAEFIVLDQQPFNVVEADSFKNLIQVAANDTSIT
VPSRPTVSKRVSTMAISAQGNIREQMKGTRPALTTDGWTSCSGVS
back to top

mRNA from alignment at H-canaliculatus_M_contigs7499:4658..4942+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7499.2.1 ID=mRNA_H-canaliculatus_M_contigs7499.2.1|Name=mRNA_H-canaliculatus_M_contigs7499.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=285bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7499:4658..4942+ (Hapterophycus canaliculatus Oshoro7m male)
TCCCACTTCAGGCCCCGTTCTCTGACCCAACAGGCTCTTCTTGGAGCTGT
GGCGGAGTTCATCGTTCTCGACCAGCAGCCGTTCAACGTCGTCGAGGCTG
ACTCTTTCAAGAACTTGATTCAAGTTGCTGCCAACGACACCAGCATCACG
GTACCTTCTCGCCCTACCGTTTCGAAACGCGTGTCGACGATGGCGATCTC
TGCGCAAGGGAATATCCGTGAGCAGATGAAGGGGACGCGCCCTGCCCTGA
CCACCGACGGCTGGACATCTTGCAGCGGGGTAAGT
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7499:4658..4942+

>mRNA_H-canaliculatus_M_contigs7499.2.1 ID=mRNA_H-canaliculatus_M_contigs7499.2.1|Name=mRNA_H-canaliculatus_M_contigs7499.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=285bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7499:4658..4942+ (Hapterophycus canaliculatus Oshoro7m male)
TCCCACTTCAGGCCCCGTTCTCTGACCCAACAGGCTCTTCTTGGAGCTGT
GGCGGAGTTCATCGTTCTCGACCAGCAGCCGTTCAACGTCGTCGAGGCTG
ACTCTTTCAAGAACTTGATTCAAGTTGCTGCCAACGACACCAGCATCACG
GTACCTTCTCGCCCTACCGTTTCGAAACGCGTGTCGACGATGGCGATCTC
TGCGCAAGGGAATATCCGTGAGCAGATGAAGGGGACGCGCCCTGCCCTGA
CCACCGACGGCTGGACATCTTGCAGCGGGGTAAGT
back to top