mRNA_H-canaliculatus_M_contigs7499.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7499.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7499.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7499.1.1 vs.
Match: Peptide-methionine ((R)-S-oxide reductase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXE9_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 2.920e-38
Identity = 61/76 (80.26%), Postives = 67/76 (88.16%), Query Frame = 1
Query:    7 RRNSPEIFPKERKLSVKQRYVVGGGTEPPFTGRFSNGVKYSTKRRGTFNCAVCDLPAYTSSSKFNSGTGWPSFYEV 234
            R+ S     +ER LSVKQRYVV GGTEPPF+GRFSNGV+YSTKRRGTF+CAVCDLPAY+SSSKFNSGTGWPSFYE 
Sbjct:   28 RKKSTAQLARERSLSVKQRYVVSGGTEPPFSGRFSNGVRYSTKRRGTFDCAVCDLPAYSSSSKFNSGTGWPSFYET 103          
BLAST of mRNA_H-canaliculatus_M_contigs7499.1.1 vs.
Match: Peptide-methionine ((R)-S-oxide reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIE9_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 4.140e-38
Identity = 59/67 (88.06%), Postives = 64/67 (95.52%), Query Frame = 1
Query:   34 KERKLSVKQRYVVGGGTEPPFTGRFSNGVKYSTKRRGTFNCAVCDLPAYTSSSKFNSGTGWPSFYEV 234
            +ER LS+KQRYVV GGTEPPF+GRFSNGV+YSTKRRGTFNCAVCDLPAY+SSSKFNSGTGWPSFYE 
Sbjct:   38 RERALSIKQRYVVSGGTEPPFSGRFSNGVRYSTKRRGTFNCAVCDLPAYSSSSKFNSGTGWPSFYET 104          
BLAST of mRNA_H-canaliculatus_M_contigs7499.1.1 vs.
Match: Peptide-methionine ((R)-S-oxide reductase n=1 Tax=Opitutales bacterium TaxID=2026772 RepID=A0A2E7VGN1_9BACT)

HSP 1 Score: 74.7 bits (182), Expect = 2.040e-15
Identity = 35/76 (46.05%), Postives = 47/76 (61.84%), Query Frame = 1
Query:    7 RRNSPEIFPKERKLSVKQRYVVGGGTEPPFTGRFSNGVKYSTKRRGTFNCAVCDLPAYTSSSKFNSGTGWPSFYEV 234
            R NS    P++  L+ KQRYV GGGTE  FTG + N      K  GT+ C  C    ++S +K++SGTGWPSF++V
Sbjct:    4 RGNSSSCAPRDENLTEKQRYVCGGGTERAFTGEYWN-----CKDTGTYLCVRCGTELFSSQTKYDSGTGWPSFHDV 74          
BLAST of mRNA_H-canaliculatus_M_contigs7499.1.1 vs.
Match: Peptide (methionine sulfoxide reductase MsrB n=1 Tax=Enterobacteriaceae bacterium RIT691 TaxID=2666199 RepID=A0A6I2HN18_9ENTR)

HSP 1 Score: 72.8 bits (177), Expect = 1.310e-14
Identity = 35/74 (47.30%), Postives = 45/74 (60.81%), Query Frame = 1
Query:   13 NSPEIFPKERKLSVKQRYVVGG-GTEPPFTGRFSNGVKYSTKRRGTFNCAVCDLPAYTSSSKFNSGTGWPSFYE 231
            N P     ++ LS  Q YV    GTEPPFTGR  +      KR G ++C +CD P +T+ SK++SG GWPSFYE
Sbjct:    3 NKPNQDELKKNLSEMQFYVTQNHGTEPPFTGRLLH-----NKRDGVYHCLICDAPLFTAQSKYDSGCGWPSFYE 71          
BLAST of mRNA_H-canaliculatus_M_contigs7499.1.1 vs.
Match: Peptide-methionine ((R)-S-oxide reductase n=1 Tax=Salmonella enterica I TaxID=59201 RepID=A0A379WBB7_SALET)

HSP 1 Score: 71.2 bits (173), Expect = 1.910e-14
Identity = 35/74 (47.30%), Postives = 45/74 (60.81%), Query Frame = 1
Query:   13 NSPEIFPKERKLSVKQRYVVGG-GTEPPFTGRFSNGVKYSTKRRGTFNCAVCDLPAYTSSSKFNSGTGWPSFYE 231
            N P     ++KLS  Q YV    GTEPPFTGR  +      KR G ++C VCD P + S +K++SG GWPSFY+
Sbjct:    3 NQPSAEELKKKLSEMQFYVTQDRGTEPPFTGRLLH-----NKRDGVYHCLVCDTPLFHSHTKYDSGCGWPSFYQ 71          
BLAST of mRNA_H-canaliculatus_M_contigs7499.1.1 vs.
Match: Peptide-methionine ((R)-S-oxide reductase n=1 Tax=Opitutae bacterium TaxID=2026771 RepID=A0A2E4ZWC6_9BACT)

HSP 1 Score: 72.0 bits (175), Expect = 2.320e-14
Identity = 30/73 (41.10%), Postives = 46/73 (63.01%), Query Frame = 1
Query:   13 NSPEIFPKERKLSVKQRYVVGGGTEPPFTGRFSNGVKYSTKRRGTFNCAVCDLPAYTSSSKFNSGTGWPSFYE 231
            +SP   P +  L+ +QR+V GGGTE PFTG +     +  K  G+++C  C    + S +K++SGTGWPSF++
Sbjct:    6 SSPSCHPGDENLTQEQRFVCGGGTERPFTGEY-----WDCKDEGSYHCIRCQAELFCSETKYDSGTGWPSFFD 73          
BLAST of mRNA_H-canaliculatus_M_contigs7499.1.1 vs.
Match: Peptide-methionine ((R)-S-oxide reductase (Fragment) n=2 Tax=Salmonella enterica TaxID=28901 RepID=A0A659QMW6_SALET)

HSP 1 Score: 71.2 bits (173), Expect = 2.520e-14
Identity = 35/74 (47.30%), Postives = 45/74 (60.81%), Query Frame = 1
Query:   13 NSPEIFPKERKLSVKQRYVVGG-GTEPPFTGRFSNGVKYSTKRRGTFNCAVCDLPAYTSSSKFNSGTGWPSFYE 231
            N P     ++KLS  Q YV    GTEPPFTGR  +      KR G ++C VCD P + S +K++SG GWPSFY+
Sbjct:   13 NQPSAEELKKKLSEMQFYVTQDRGTEPPFTGRLLH-----NKRDGVYHCLVCDTPLFHSHTKYDSGCGWPSFYQ 81          
BLAST of mRNA_H-canaliculatus_M_contigs7499.1.1 vs.
Match: Peptide (methionine sulfoxide reductase MsrB n=28 Tax=Enterobacteriaceae TaxID=543 RepID=A0A0D8WB56_ECOLX)

HSP 1 Score: 72.0 bits (175), Expect = 2.610e-14
Identity = 35/74 (47.30%), Postives = 44/74 (59.46%), Query Frame = 1
Query:   13 NSPEIFPKERKLSVKQRYVVGG-GTEPPFTGRFSNGVKYSTKRRGTFNCAVCDLPAYTSSSKFNSGTGWPSFYE 231
            N P     ++ LS  Q YV    GTEPPFTGR  +      KR G ++C +CD P + S SK++SG GWPSFYE
Sbjct:    3 NKPSAEELKKNLSEMQFYVTQNHGTEPPFTGRLLH-----NKRDGVYHCLICDAPLFHSQSKYDSGCGWPSFYE 71          
BLAST of mRNA_H-canaliculatus_M_contigs7499.1.1 vs.
Match: Peptide (methionine sulfoxide reductase MsrB n=1 Tax=Trabulsiella guamensis ATCC 49490 TaxID=1005994 RepID=A0A085AGU9_9ENTR)

HSP 1 Score: 72.0 bits (175), Expect = 2.610e-14
Identity = 37/78 (47.44%), Postives = 48/78 (61.54%), Query Frame = 1
Query:    1 LVRRNSPEIFPKERKLSVKQRYVVGG-GTEPPFTGRFSNGVKYSTKRRGTFNCAVCDLPAYTSSSKFNSGTGWPSFYE 231
            +  + +PE   K+  LS  Q YV    GTEPPFTG+  +      KR G ++C VCD P +TS SK++SG GWPSFYE
Sbjct:    1 MANQKTPEELKKD--LSEMQFYVTQNHGTEPPFTGQLLH-----NKRDGVYHCLVCDAPLFTSQSKYDSGCGWPSFYE 71          
BLAST of mRNA_H-canaliculatus_M_contigs7499.1.1 vs.
Match: Peptide (methionine sulfoxide reductase MsrB n=2 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9NRI2_9BACT)

HSP 1 Score: 72.0 bits (175), Expect = 2.670e-14
Identity = 33/66 (50.00%), Postives = 45/66 (68.18%), Query Frame = 1
Query:   37 ERKLSVKQRYVVG-GGTEPPFTGRFSNGVKYSTKRRGTFNCAVCDLPAYTSSSKFNSGTGWPSFYE 231
            +++LS +Q +V    GTEPPFTG++ N     +K  GT+ C  C  P ++S +KFNSGTGWPSFYE
Sbjct:   13 QKELSPEQFHVTRRAGTEPPFTGKYWN-----SKEAGTYKCVCCGQPLFSSETKFNSGTGWPSFYE 73          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7499.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Peptide-methionine2.920e-3880.26(R)-S-oxide reductase n=1 Tax=Ectocarpus sp. CCAP ... [more]
Peptide-methionine4.140e-3888.06(R)-S-oxide reductase n=1 Tax=Ectocarpus siliculos... [more]
Peptide-methionine2.040e-1546.05(R)-S-oxide reductase n=1 Tax=Opitutales bacterium... [more]
Peptide1.310e-1447.30methionine sulfoxide reductase MsrB n=1 Tax=Entero... [more]
Peptide-methionine1.910e-1447.30(R)-S-oxide reductase n=1 Tax=Salmonella enterica ... [more]
Peptide-methionine2.320e-1441.10(R)-S-oxide reductase n=1 Tax=Opitutae bacterium T... [more]
Peptide-methionine2.520e-1447.30(R)-S-oxide reductase (Fragment) n=2 Tax=Salmonell... [more]
Peptide2.610e-1447.30methionine sulfoxide reductase MsrB n=28 Tax=Enter... [more]
Peptide2.610e-1447.44methionine sulfoxide reductase MsrB n=1 Tax=Trabul... [more]
Peptide2.670e-1450.00methionine sulfoxide reductase MsrB n=2 Tax=Acidob... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7499contigH-canaliculatus_M_contigs7499:2897..3130 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FIE9
PFAMsSelR
Model size234
Max annot lvl2759|Eukaryota
KEGG koko:K07305
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0016491,GO:0016667,GO:0016671,GO:0019538,GO:0030091,GO:0033554,GO:0033743,GO:0034599,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051716,GO:0055114,GO:0070887,GO:0071704,GO:0097237,GO:0098754,GO:1901564,GO:1990748
Exons1
Evalue6.79e-39
EggNOG OGsCOG0229@1|root,KOG0856@2759|Eukaryota
EC1.8.4.12
Descriptionpeptide-methionine (R)-S-oxide reductase activity
Cds size234
COG categoryO
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854087.544363-CDS-H-canaliculatus_M_contigs7499:2896..31301696854087.544363-CDS-H-canaliculatus_M_contigs7499:2896..3130Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7499 2897..3130 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7499.1.1prot_H-canaliculatus_M_contigs7499.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7499 2897..3130 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7499.1.1

>prot_H-canaliculatus_M_contigs7499.1.1 ID=prot_H-canaliculatus_M_contigs7499.1.1|Name=mRNA_H-canaliculatus_M_contigs7499.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=78bp
LVRRNSPEIFPKERKLSVKQRYVVGGGTEPPFTGRFSNGVKYSTKRRGTF
NCAVCDLPAYTSSSKFNSGTGWPSFYEV
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mRNA from alignment at H-canaliculatus_M_contigs7499:2897..3130+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7499.1.1 ID=mRNA_H-canaliculatus_M_contigs7499.1.1|Name=mRNA_H-canaliculatus_M_contigs7499.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=234bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7499:2897..3130+ (Hapterophycus canaliculatus Oshoro7m male)
CTCGTCCGCCGTAATTCTCCCGAAATTTTTCCGAAGGAACGAAAGCTGAG CGTCAAACAGCGGTACGTGGTTGGCGGAGGCACGGAACCTCCGTTCACCG GGCGCTTCTCGAACGGGGTCAAGTACAGCACTAAGAGGCGGGGCACCTTC AACTGCGCTGTGTGCGACCTCCCGGCGTATACTTCTTCCTCCAAGTTCAA CAGCGGCACGGGATGGCCCAGCTTCTACGAGGTG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7499:2897..3130+

>mRNA_H-canaliculatus_M_contigs7499.1.1 ID=mRNA_H-canaliculatus_M_contigs7499.1.1|Name=mRNA_H-canaliculatus_M_contigs7499.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=234bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7499:2897..3130+ (Hapterophycus canaliculatus Oshoro7m male)
CTCGTCCGCCGTAATTCTCCCGAAATTTTTCCGAAGGAACGAAAGCTGAG
CGTCAAACAGCGGTACGTGGTTGGCGGAGGCACGGAACCTCCGTTCACCG
GGCGCTTCTCGAACGGGGTCAAGTACAGCACTAAGAGGCGGGGCACCTTC
AACTGCGCTGTGTGCGACCTCCCGGCGTATACTTCTTCCTCCAAGTTCAA
CAGCGGCACGGGATGGCCCAGCTTCTACGAGGTG
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