mRNA_H-canaliculatus_M_contigs7499.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
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Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7499.1.1 vs.
Match: Peptide-methionine ((R)-S-oxide reductase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXE9_9PHAE) HSP 1 Score: 135 bits (339), Expect = 2.920e-38 Identity = 61/76 (80.26%), Postives = 67/76 (88.16%), Query Frame = 1
Query: 7 RRNSPEIFPKERKLSVKQRYVVGGGTEPPFTGRFSNGVKYSTKRRGTFNCAVCDLPAYTSSSKFNSGTGWPSFYEV 234
R+ S +ER LSVKQRYVV GGTEPPF+GRFSNGV+YSTKRRGTF+CAVCDLPAY+SSSKFNSGTGWPSFYE
Sbjct: 28 RKKSTAQLARERSLSVKQRYVVSGGTEPPFSGRFSNGVRYSTKRRGTFDCAVCDLPAYSSSSKFNSGTGWPSFYET 103
BLAST of mRNA_H-canaliculatus_M_contigs7499.1.1 vs.
Match: Peptide-methionine ((R)-S-oxide reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIE9_ECTSI) HSP 1 Score: 134 bits (338), Expect = 4.140e-38 Identity = 59/67 (88.06%), Postives = 64/67 (95.52%), Query Frame = 1
Query: 34 KERKLSVKQRYVVGGGTEPPFTGRFSNGVKYSTKRRGTFNCAVCDLPAYTSSSKFNSGTGWPSFYEV 234
+ER LS+KQRYVV GGTEPPF+GRFSNGV+YSTKRRGTFNCAVCDLPAY+SSSKFNSGTGWPSFYE
Sbjct: 38 RERALSIKQRYVVSGGTEPPFSGRFSNGVRYSTKRRGTFNCAVCDLPAYSSSSKFNSGTGWPSFYET 104
BLAST of mRNA_H-canaliculatus_M_contigs7499.1.1 vs.
Match: Peptide-methionine ((R)-S-oxide reductase n=1 Tax=Opitutales bacterium TaxID=2026772 RepID=A0A2E7VGN1_9BACT) HSP 1 Score: 74.7 bits (182), Expect = 2.040e-15 Identity = 35/76 (46.05%), Postives = 47/76 (61.84%), Query Frame = 1
Query: 7 RRNSPEIFPKERKLSVKQRYVVGGGTEPPFTGRFSNGVKYSTKRRGTFNCAVCDLPAYTSSSKFNSGTGWPSFYEV 234
R NS P++ L+ KQRYV GGGTE FTG + N K GT+ C C ++S +K++SGTGWPSF++V
Sbjct: 4 RGNSSSCAPRDENLTEKQRYVCGGGTERAFTGEYWN-----CKDTGTYLCVRCGTELFSSQTKYDSGTGWPSFHDV 74
BLAST of mRNA_H-canaliculatus_M_contigs7499.1.1 vs.
Match: Peptide (methionine sulfoxide reductase MsrB n=1 Tax=Enterobacteriaceae bacterium RIT691 TaxID=2666199 RepID=A0A6I2HN18_9ENTR) HSP 1 Score: 72.8 bits (177), Expect = 1.310e-14 Identity = 35/74 (47.30%), Postives = 45/74 (60.81%), Query Frame = 1
Query: 13 NSPEIFPKERKLSVKQRYVVGG-GTEPPFTGRFSNGVKYSTKRRGTFNCAVCDLPAYTSSSKFNSGTGWPSFYE 231
N P ++ LS Q YV GTEPPFTGR + KR G ++C +CD P +T+ SK++SG GWPSFYE
Sbjct: 3 NKPNQDELKKNLSEMQFYVTQNHGTEPPFTGRLLH-----NKRDGVYHCLICDAPLFTAQSKYDSGCGWPSFYE 71
BLAST of mRNA_H-canaliculatus_M_contigs7499.1.1 vs.
Match: Peptide-methionine ((R)-S-oxide reductase n=1 Tax=Salmonella enterica I TaxID=59201 RepID=A0A379WBB7_SALET) HSP 1 Score: 71.2 bits (173), Expect = 1.910e-14 Identity = 35/74 (47.30%), Postives = 45/74 (60.81%), Query Frame = 1
Query: 13 NSPEIFPKERKLSVKQRYVVGG-GTEPPFTGRFSNGVKYSTKRRGTFNCAVCDLPAYTSSSKFNSGTGWPSFYE 231
N P ++KLS Q YV GTEPPFTGR + KR G ++C VCD P + S +K++SG GWPSFY+
Sbjct: 3 NQPSAEELKKKLSEMQFYVTQDRGTEPPFTGRLLH-----NKRDGVYHCLVCDTPLFHSHTKYDSGCGWPSFYQ 71
BLAST of mRNA_H-canaliculatus_M_contigs7499.1.1 vs.
Match: Peptide-methionine ((R)-S-oxide reductase n=1 Tax=Opitutae bacterium TaxID=2026771 RepID=A0A2E4ZWC6_9BACT) HSP 1 Score: 72.0 bits (175), Expect = 2.320e-14 Identity = 30/73 (41.10%), Postives = 46/73 (63.01%), Query Frame = 1
Query: 13 NSPEIFPKERKLSVKQRYVVGGGTEPPFTGRFSNGVKYSTKRRGTFNCAVCDLPAYTSSSKFNSGTGWPSFYE 231
+SP P + L+ +QR+V GGGTE PFTG + + K G+++C C + S +K++SGTGWPSF++
Sbjct: 6 SSPSCHPGDENLTQEQRFVCGGGTERPFTGEY-----WDCKDEGSYHCIRCQAELFCSETKYDSGTGWPSFFD 73
BLAST of mRNA_H-canaliculatus_M_contigs7499.1.1 vs.
Match: Peptide-methionine ((R)-S-oxide reductase (Fragment) n=2 Tax=Salmonella enterica TaxID=28901 RepID=A0A659QMW6_SALET) HSP 1 Score: 71.2 bits (173), Expect = 2.520e-14 Identity = 35/74 (47.30%), Postives = 45/74 (60.81%), Query Frame = 1
Query: 13 NSPEIFPKERKLSVKQRYVVGG-GTEPPFTGRFSNGVKYSTKRRGTFNCAVCDLPAYTSSSKFNSGTGWPSFYE 231
N P ++KLS Q YV GTEPPFTGR + KR G ++C VCD P + S +K++SG GWPSFY+
Sbjct: 13 NQPSAEELKKKLSEMQFYVTQDRGTEPPFTGRLLH-----NKRDGVYHCLVCDTPLFHSHTKYDSGCGWPSFYQ 81
BLAST of mRNA_H-canaliculatus_M_contigs7499.1.1 vs.
Match: Peptide (methionine sulfoxide reductase MsrB n=28 Tax=Enterobacteriaceae TaxID=543 RepID=A0A0D8WB56_ECOLX) HSP 1 Score: 72.0 bits (175), Expect = 2.610e-14 Identity = 35/74 (47.30%), Postives = 44/74 (59.46%), Query Frame = 1
Query: 13 NSPEIFPKERKLSVKQRYVVGG-GTEPPFTGRFSNGVKYSTKRRGTFNCAVCDLPAYTSSSKFNSGTGWPSFYE 231
N P ++ LS Q YV GTEPPFTGR + KR G ++C +CD P + S SK++SG GWPSFYE
Sbjct: 3 NKPSAEELKKNLSEMQFYVTQNHGTEPPFTGRLLH-----NKRDGVYHCLICDAPLFHSQSKYDSGCGWPSFYE 71
BLAST of mRNA_H-canaliculatus_M_contigs7499.1.1 vs.
Match: Peptide (methionine sulfoxide reductase MsrB n=1 Tax=Trabulsiella guamensis ATCC 49490 TaxID=1005994 RepID=A0A085AGU9_9ENTR) HSP 1 Score: 72.0 bits (175), Expect = 2.610e-14 Identity = 37/78 (47.44%), Postives = 48/78 (61.54%), Query Frame = 1
Query: 1 LVRRNSPEIFPKERKLSVKQRYVVGG-GTEPPFTGRFSNGVKYSTKRRGTFNCAVCDLPAYTSSSKFNSGTGWPSFYE 231
+ + +PE K+ LS Q YV GTEPPFTG+ + KR G ++C VCD P +TS SK++SG GWPSFYE
Sbjct: 1 MANQKTPEELKKD--LSEMQFYVTQNHGTEPPFTGQLLH-----NKRDGVYHCLVCDAPLFTSQSKYDSGCGWPSFYE 71
BLAST of mRNA_H-canaliculatus_M_contigs7499.1.1 vs.
Match: Peptide (methionine sulfoxide reductase MsrB n=2 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9NRI2_9BACT) HSP 1 Score: 72.0 bits (175), Expect = 2.670e-14 Identity = 33/66 (50.00%), Postives = 45/66 (68.18%), Query Frame = 1
Query: 37 ERKLSVKQRYVVG-GGTEPPFTGRFSNGVKYSTKRRGTFNCAVCDLPAYTSSSKFNSGTGWPSFYE 231
+++LS +Q +V GTEPPFTG++ N +K GT+ C C P ++S +KFNSGTGWPSFYE
Sbjct: 13 QKELSPEQFHVTRRAGTEPPFTGKYWN-----SKEAGTYKCVCCGQPLFSSETKFNSGTGWPSFYE 73 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7499.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs7499.1.1 >prot_H-canaliculatus_M_contigs7499.1.1 ID=prot_H-canaliculatus_M_contigs7499.1.1|Name=mRNA_H-canaliculatus_M_contigs7499.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=78bp LVRRNSPEIFPKERKLSVKQRYVVGGGTEPPFTGRFSNGVKYSTKRRGTFback to top mRNA from alignment at H-canaliculatus_M_contigs7499:2897..3130+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs7499.1.1 ID=mRNA_H-canaliculatus_M_contigs7499.1.1|Name=mRNA_H-canaliculatus_M_contigs7499.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=234bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7499:2897..3130+ (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7499:2897..3130+ >mRNA_H-canaliculatus_M_contigs7499.1.1 ID=mRNA_H-canaliculatus_M_contigs7499.1.1|Name=mRNA_H-canaliculatus_M_contigs7499.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=234bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7499:2897..3130+ (Hapterophycus canaliculatus Oshoro7m male)back to top |