mRNA_H-canaliculatus_M_contigs74987.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs74987.1.1
Unique NamemRNA_H-canaliculatus_M_contigs74987.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs74987.1.1 vs.
Match: Kinesin-associated (protein, putative n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0P369_PHYIT)

HSP 1 Score: 60.8 bits (146), Expect = 7.710e-10
Identity = 25/34 (73.53%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:    1 VELLKRPPYRARGLRLLYHMSIDDRCKAMFAYTD 102
            VELLK+PP+RA  LR+LYH+SIDDRCK+MF YT+
Sbjct:  290 VELLKKPPFRALSLRILYHLSIDDRCKSMFTYTE 323
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BLAST of mRNA_H-canaliculatus_M_contigs74987.1.1 vs.
Match: Uncharacterized (protein n=21 Tax=Phytophthora TaxID=4783 RepID=H3GWU2_PHYRM)

HSP 1 Score: 60.8 bits (146), Expect = 7.710e-10
Identity = 25/34 (73.53%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:    1 VELLKRPPYRARGLRLLYHMSIDDRCKAMFAYTD 102
            VELLK+PP+RA  LR+LYH+SIDDRCK+MF YT+
Sbjct:  292 VELLKKPPFRALSLRILYHLSIDDRCKSMFTYTE 325
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BLAST of mRNA_H-canaliculatus_M_contigs74987.1.1 vs.
Match: Uncharacterized (protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7K8P0_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 7.710e-10
Identity = 25/34 (73.53%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:    1 VELLKRPPYRARGLRLLYHMSIDDRCKAMFAYTD 102
            VELLK+PP+RA  LR+LYH+SIDDRCK+MF YT+
Sbjct:  293 VELLKKPPFRALSLRILYHLSIDDRCKSMFTYTE 326
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BLAST of mRNA_H-canaliculatus_M_contigs74987.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C5X8_PYTIN)

HSP 1 Score: 60.5 bits (145), Expect = 1.050e-9
Identity = 25/34 (73.53%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:    1 VELLKRPPYRARGLRLLYHMSIDDRCKAMFAYTD 102
            VELLK+PP+RA  LR+LYH S+DDRCK+MF YTD
Sbjct:  251 VELLKKPPFRALSLRILYHFSMDDRCKSMFTYTD 284
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs74987.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YIZ8_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.970e-9
Identity = 24/34 (70.59%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:    1 VELLKRPPYRARGLRLLYHMSIDDRCKAMFAYTD 102
            VELLK+PP+RA  LR+LYH+S+DDRCK+MF YT+
Sbjct:  293 VELLKKPPFRALSLRILYHLSMDDRCKSMFTYTE 326
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs74987.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WVG6_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.970e-9
Identity = 24/34 (70.59%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:    1 VELLKRPPYRARGLRLLYHMSIDDRCKAMFAYTD 102
            VELLK+PP+RA  LR+LYH+S+DDRCK+MF YT+
Sbjct:  287 VELLKKPPFRALSLRILYHLSMDDRCKSMFTYTE 320
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs74987.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WWI7_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.980e-9
Identity = 24/34 (70.59%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:    1 VELLKRPPYRARGLRLLYHMSIDDRCKAMFAYTD 102
            VELLK+PP+RA  LR+LYH+S+DDRCK+MF YT+
Sbjct:   81 VELLKKPPFRALSLRILYHLSMDDRCKSMFTYTE 114
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs74987.1.1 vs.
Match: Kinesinassociated (protein putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WYN6_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 2.690e-9
Identity = 24/34 (70.59%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:    1 VELLKRPPYRARGLRLLYHMSIDDRCKAMFAYTD 102
            V LLK+PP+RA  LR+LYH+S+DDRCK+MF YTD
Sbjct:  290 VTLLKKPPFRASSLRILYHLSMDDRCKSMFTYTD 323
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs74987.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U3R2_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 3.680e-9
Identity = 24/34 (70.59%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:    1 VELLKRPPYRARGLRLLYHMSIDDRCKAMFAYTD 102
            VELLK+PP+RA  LR+LYH+S+DDRCK+MF YT+
Sbjct:  301 VELLKKPPFRALTLRILYHLSMDDRCKSMFTYTE 334
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs74987.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C6M2_PYTOL)

HSP 1 Score: 58.5 bits (140), Expect = 5.030e-9
Identity = 23/34 (67.65%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:    1 VELLKRPPYRARGLRLLYHMSIDDRCKAMFAYTD 102
            V+LLK+PP+RA  LR+LYH+S+DDRCK+MF YT+
Sbjct:  289 VDLLKKPPFRALSLRILYHLSMDDRCKSMFTYTE 322
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs74987.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
Kinesin-associated7.710e-1073.53protein, putative n=1 Tax=Phytophthora infestans (... [more]
Uncharacterized7.710e-1073.53protein n=21 Tax=Phytophthora TaxID=4783 RepID=H3G... [more]
Uncharacterized7.710e-1073.53protein n=3 Tax=Phytophthora kernoviae TaxID=32545... [more]
Uncharacterized1.050e-973.53protein n=1 Tax=Pythium insidiosum TaxID=114742 Re... [more]
Uncharacterized1.970e-970.59protein n=1 Tax=Pythium brassicum TaxID=1485010 Re... [more]
Uncharacterized1.970e-970.59protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID... [more]
Uncharacterized1.980e-970.59protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID... [more]
Kinesinassociated2.690e-970.59protein putative n=1 Tax=Albugo laibachii Nc14 Tax... [more]
Uncharacterized3.680e-970.59protein n=2 Tax=Aphanomyces invadans TaxID=157072 ... [more]
Uncharacterized5.030e-967.65protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs74987contigH-canaliculatus_M_contigs74987:443..544 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog164328.Phyra81974
PFAMsKAP
Model size102
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.26e-10
EggNOG OGsKOG1222@1|root,KOG1222@2759|Eukaryota,3Q96T@4776|Peronosporales
DescriptionKinesin-associated protein (KAP)
Cds size102
COG categoryU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854087.5074642-CDS-H-canaliculatus_M_contigs74987:442..5441696854087.5074642-CDS-H-canaliculatus_M_contigs74987:442..544Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs74987 443..544 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs74987.1.1prot_H-canaliculatus_M_contigs74987.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs74987 443..544 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs74987.1.1

>prot_H-canaliculatus_M_contigs74987.1.1 ID=prot_H-canaliculatus_M_contigs74987.1.1|Name=mRNA_H-canaliculatus_M_contigs74987.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=34bp
VELLKRPPYRARGLRLLYHMSIDDRCKAMFAYTD
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mRNA from alignment at H-canaliculatus_M_contigs74987:443..544-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs74987.1.1 ID=mRNA_H-canaliculatus_M_contigs74987.1.1|Name=mRNA_H-canaliculatus_M_contigs74987.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=102bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74987:443..544- (Hapterophycus canaliculatus Oshoro7m male)
GTGGAGCTGCTGAAGCGCCCGCCGTACAGAGCGAGGGGCCTGCGGCTGCT
CTACCACATGTCCATCGACGACCGCTGCAAGGCGATGTTCGCCTATACGG
AT
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs74987:443..544-

>mRNA_H-canaliculatus_M_contigs74987.1.1 ID=mRNA_H-canaliculatus_M_contigs74987.1.1|Name=mRNA_H-canaliculatus_M_contigs74987.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=102bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74987:443..544- (Hapterophycus canaliculatus Oshoro7m male)
GTGGAGCTGCTGAAGCGCCCGCCGTACAGAGCGAGGGGCCTGCGGCTGCT
CTACCACATGTCCATCGACGACCGCTGCAAGGCGATGTTCGCCTATACGG
AT
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